BAC Information

Click to search

BAC

Clone NameB6Ng01-143A11
Chromosome17 (Build37)
Map Location 32,296,496 - 32,524,809
singlet/doubletdoublet
Overlap geneNotch3, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz
Upstream geneTff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa, Snf1lk, Hsf2bp, Rrp1b, LOC435518, Pdxk-ps
Downstream geneA430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143A11.bB6Ng01-143A11.g
ACCDH941075DH941076
length1,0891,011
definitionDH941075|Mus musculus domesticus DNA, BAC clone: B6Ng01-143A11, 5' end.DH941076|Mus musculus domesticus DNA, BAC clone: B6Ng01-143A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,296,496 - 32,297,230)(32,523,789 - 32,524,809)
sequence
gaattcacagtaatttacctgcctctgtttctctgtctctgcctctgcct
ctctgcttctctgcctctctgcctctctgcctctcttcctctgcctctgc
ccctctgcctctctgcctctctgcctctctgcctctctgcctctctgcct
ctctgcctctctgcctctgcctctgcctctgcctctctgcctctcttctg
cctctgcccctctgcctctgcctctgcctctctgcctctctgcctctgcc
tctctgtccctctgcctctctgcctctgcctctcttttgcctctgcctct
gcctctgcctctctgcccctctgcctctctgcctctgcccctctgcctct
gcctctgcctctctgcctctctgcctctgcccctctgcctctgcctctgc
ctctctgcctctctgcctctctgcctctgcctctctgcctctgcctctct
gcctctctgcctctgcctctgtccctctgcccctctgcctctctgcctct
gcccctctgcctctgcctctgcctctcttctgcctctgcctctctgcctc
tctgcctctcttctgcctctgcctctctgcctctctgcctctctgcctct
ctgcctctctgcctctgcctctctgcctctctgcctctctgcctctctgc
ctctcttctgcctctgcccctctgcccctctgcctctctgcctctagcac
tgggtttaaaggcaagtgccaccattcccagccatcctcatttattctga
cacaaatattattgacacctactacatactaaaacacagcagcaagcaaa
ataaaagtgactcttacccttttggtcctcatagccaggtcaggaaagaa
acatagacaggtaacacattatacgaacataccaaaacagctgtacatgc
cacaagctcacaaggacgtgtacactgagaacacgccatgtcccagagct
gtgactatcactttattcttttaaggagattgtgccaggcaaggtgttca
cacaacctgcattccgaggaaaagcaggaggatgagagtcaaagtcagcc
ttggccaataccagttgaggctagcctgactgcatgaga
gaattctcttcttactctcttaaggtcttccttgtctttgtctccaggcc
cacaatgtcctgctgaacctgccaggtactgagtgaagattcacggctgg
cacccatggaggggttactggcaggtggcctggctgccccggatcatcct
cgaggccccgctccaagagaggacatcgagagtggggctgaggctgctga
gggggaaggtgatatctttccatcttctcattacctgccaatcaccaaag
aaggccctcgagacattctggatggcagaagtggcatttctggtaagagg
gctctgtggccctaaagaagcttcccacttggtcccccaggcccagagag
agtcaggtcaccccacccagcaggggctgagttgcaattggaattctgtt
cgatgcacatagcctcctttagtgctccacgtaccgcttttcagtttgcc
cttatgaaaacagatgtcttgggagcccatgactggatgtaagaaactgg
gattcatacttgtagtgtcctggctttcctctctaagctggacaccagct
gtatccaaatcccatgtcagtaccctgagctctttgcccaaagcccactt
gttccttcttgcagtcttgatggagtggagctcctgagcgagtgccctct
agtggtaaggtaaagtctggggagattcgagttgcctctttccatcttga
tttaccccatacaaggctagctcacactgtccccacctcacaatttgttg
ttcgtttattaaacactgagcacctgctgtgccactttctgttctgggtg
ctggggaaataatcataaagagacaaaagtccctgtcctccaggggttgg
cattccagaagggaagtggacaaggacgactgagcagatgtcataagggc
agttatgcagctatgcagatataaactgagtgccaggacatggctggcgc
tcaggaaagcacctgacacagtgtgttttgagccaagcacaaaatgagtt
gttgggacgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_32296496_32297230
seq2: B6Ng01-143A11.b_422_1133

seq1  TGCCCCTCTGCCTCTGCCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTCTGCCTCTGCCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTC  50

seq1  TGCCTCTCTGCCTCTGCCTCTCTGCCTCTCTGCCTCTGCCTCTGTCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCTGCCTCTGCCTCTCTGCCTCTCTGCCTCTGCCTCTGTCCCTC  100

seq1  TGCCCCTCTGCCTCTCTGCCTCTGCCCCTCTGCCTCTGCCTCTGCCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTCTGCCTCTCTGCCTCTGCCCCTCTGCCTCTGCCTCTGCCTCTC  150

seq1  TTCTGCCTCTGCCTCTCTGCCTCTCTGCCTCTCTTCTGCCTCTGCCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTCTGCCTCTCTGCCTCTCTGCCTCTCTTCTGCCTCTGCCTCTC  200

seq1  TGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTGCCTCTCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTGCCTCTCTGCC  250

seq1  TCTCTGCCTCTCTGCCTCTCTGCCTCTCTTCTGCCTCTGCCCCTCTGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTCTCTGCCTCTCTGCCTCTCTTCTGCCTCTGCCCCTCTGCCC  300

seq1  CTCTGCCTCTCTGCCTCTAGCACTGGGTTTAAAGGCAAGTGCCACCATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCTCTGCCTCTAGCACTGGGTTTAAAGGCAAGTGCCACCATTC  350

seq1  CCAGCCATCCTCATTTATTCTGACAACAAATATTATTGACACCTACTACA  400
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCAGCCATCCTCATTTATTCTGAC-ACAAATATTATTGACACCTACTACA  399

seq1  TACTAAAACACAGCAGCAAGCAAAATAAAAGTGACTCTTACCCTTTTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAACACAGCAGCAAGCAAAATAAAAGTGACTCTTACCCTTTTGGT  449

seq1  CCTCATAGCCAGGTCAGGCAAAGAAAACATAGACAGGTAACACATTAATA  500
      |||||||||||||||||| |||| |||||||||||||||||||||| |||
seq2  CCTCATAGCCAGGTCAGG-AAAG-AAACATAGACAGGTAACACATT-ATA  496

seq1  CGAACATACCAAAAACAGCTTGTACATGCCACAAGCTCACAAAGGACGTG  550
      |||||||||| |||||||| |||||||||||||||||||| |||||||| 
seq2  CGAACATACC-AAAACAGC-TGTACATGCCACAAGCTCAC-AAGGACGT-  542

seq1  GTACACTGAAGAACACGCCCATGTCCCAGAAGCTGTGACTATCACTTTAT  600
      |||||||| |||||||| ||||||||||| ||||||||||||||||||| 
seq2  GTACACTG-AGAACACG-CCATGTCCCAG-AGCTGTGACTATCACTTTA-  588

seq1  TTCTTTTTAAAGGAGA-TGTGCCAGGCAAGGTGGTTCACACAAACCTGGC  649
      |||||||  ||||||| ||||||||||||||| |||||||| ||||| ||
seq2  TTCTTTT--AAGGAGATTGTGCCAGGCAAGGT-GTTCACAC-AACCT-GC  633

seq1  ATTCCGAGGAAAAAGCAGGAGGATGAGGAGTTCAAGGTCAGCCTTGGCCA  699
      ||||||||| |||||||||||||||| ||| |||| ||||||||||||||
seq2  ATTCCGAGG-AAAAGCAGGAGGATGA-GAG-TCAAAGTCAGCCTTGGCCA  680

seq1  CATAGCAAGTTTGAGGCTAGCCTTGACTGCATGAGA  735
       ||| ||   |||||||||||| |||||||||||||
seq2  -ATACCA--GTTGAGGCTAGCC-TGACTGCATGAGA  712

seq1: chr17_32523789_32524809
seq2: B6Ng01-143A11.g_68_1078 (reverse)

seq1  CACGTCCC-ACCACTCATTCTGTGCTGTGCCTCAAACACCACTGTGTCAG  49
      |||||||| || ||||||| |||||| || ||||||   |||||||||||
seq2  CACGTCCCAACAACTCATTTTGTGCT-TGGCTCAAAACACACTGTGTCAG  49

seq1  GTGGCTTTTCCTGGAGCGCCCAGCCATGGTCCTGGCACTCAGTTTAATAT  99
      |||   |||||| ||||| |||||||| ||||||||||||||||| ||||
seq2  GTG--CTTTCCT-GAGCG-CCAGCCAT-GTCCTGGCACTCAGTTT-ATAT  93

seq1  CTGCATAGCCTGCATAACCTGCCCTTATGACATCTGCTCAGTCGTTCCTT  149
      |||||||| |||||||| |||||||||||||||||||||||||| |||||
seq2  CTGCATAG-CTGCATAA-CTGCCCTTATGACATCTGCTCAGTCG-TCCTT  140

seq1  GTCCACCTTCCCTTCTGGAATGCCAACCCCTGGAGGACAGGGACTTTTGT  199
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCA-CTTCCCTTCTGGAATGCCAACCCCTGGAGGACAGGGACTTTTGT  189

seq1  CTCTTTATGATTATTTCCCCAGCACCCAGAACAGAAAGTGGCACAGCAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATGATTATTTCCCCAGCACCCAGAACAGAAAGTGGCACAGCAGG  239

seq1  TGCTCAGTGTTTAATAAACGAACAACAAATTGTGAGGTGGGGACAGTGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTGTTTAATAAACGAACAACAAATTGTGAGGTGGGGACAGTGTG  289

seq1  AGCTAGCCTTGTATGGGGTAAATCAAGATGGAAAGAGGCAACTCGAATCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCCTTGTATGGGGTAAATCAAGATGGAAAGAGGCAACTCGAATCT  339

seq1  CCCCAGACTTTACCTTACCACTAGAGGGCACTCGCTCAGGAGCTCCACTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGACTTTACCTTACCACTAGAGGGCACTCGCTCAGGAGCTCCACTC  389

seq1  CATCAAGACTGCAAGAAGGAACAAGTGGGCTTTGGGCAAAGAGCTCAGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGACTGCAAGAAGGAACAAGTGGGCTTTGGGCAAAGAGCTCAGGG  439

seq1  TACTGACATGGGATTTGGATACAGCTGGTGTCCAGCTTAGAGAGGAAAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACATGGGATTTGGATACAGCTGGTGTCCAGCTTAGAGAGGAAAGC  489

seq1  CAGGACACTACAAGTATGAATCCCAGTTTCTTACATCCAGTCATGGGCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACACTACAAGTATGAATCCCAGTTTCTTACATCCAGTCATGGGCTC  539

seq1  CCAAGACATCTGTTTTCATAAGGGCAAACTGAAAAGCGGTACGTGGAGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACATCTGTTTTCATAAGGGCAAACTGAAAAGCGGTACGTGGAGCA  589

seq1  CTAAAGGAGGCTATGTGCATCGAACAGAATTCCAATTGCAACTCAGCCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGAGGCTATGTGCATCGAACAGAATTCCAATTGCAACTCAGCCCC  639

seq1  TGCTGGGTGGGGTGACCTGACTCTCTCTGGGCCTGGGGGACCAAGTGGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGTGGGGTGACCTGACTCTCTCTGGGCCTGGGGGACCAAGTGGGA  689

seq1  AGCTTCTTTAGGGCCACAGAGCCCTCTTACCAGAAATGCCACTTCTGCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTTTAGGGCCACAGAGCCCTCTTACCAGAAATGCCACTTCTGCCA  739

seq1  TCCAGAATGTCTCGAGGGCCTTCTTTGGTGATTGGCAGGTAATGAGAAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAATGTCTCGAGGGCCTTCTTTGGTGATTGGCAGGTAATGAGAAGA  789

seq1  TGGAAAGATATCACCTTCCCCCTCAGCAGCCTCAGCCCCACTCTCGATGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGATATCACCTTCCCCCTCAGCAGCCTCAGCCCCACTCTCGATGT  839

seq1  CCTCTCTTGGAGCGGGGCCTCGAGGATGATCCGGGGCAGCCAGGCCACCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTGGAGCGGGGCCTCGAGGATGATCCGGGGCAGCCAGGCCACCT  889

seq1  GCCAGTAACCCCTCCATGGGTGCCAGCCGTGAATCTTCACTCAGTACCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTAACCCCTCCATGGGTGCCAGCCGTGAATCTTCACTCAGTACCTG  939

seq1  GCAGGTTCAGCAGGACATTGTGGGCCTGGAGACAAAGACAAGGAAGACCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTCAGCAGGACATTGTGGGCCTGGAGACAAAGACAAGGAAGACCT  989

seq1  TAAGAGAGTAAGAAGAGAATTC  1021
      ||||||||||||||||||||||
seq2  TAAGAGAGTAAGAAGAGAATTC  1011