BAC Information

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BAC

Clone NameB6Ng01-143B21
Chromosome11 (Build37)17 (Build37)
Map Location 104,011,671 - 104,012,77335,682,748 - 35,682,943
singlet/doubletsingletsinglet
Overlap geneCrhr1
Upstream geneFmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645
Downstream gene4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143B21.bB6Ng01-143B21.g
ACCDH941138DH941139
length1,076202
definitionDH941138|Mus musculus domesticus DNA, BAC clone: B6Ng01-143B21, 5' end.DH941139|Mus musculus domesticus DNA, BAC clone: B6Ng01-143B21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,011,671 - 104,012,773)(35,682,748 - 35,682,943)
sequence
gaattcccagtcttgctaggtgtggtggcgcacttgggagacagaaacag
gaggatgtctgtgagttcaaggccagcctggtctacaaagcaagttacag
gacagccagggctacacagaaaaaccctgtcccacccccaccccccaaaa
ttcccagtttaagctgatcatggtggtacacacctttaatccttgagcct
gggagactgagacaggggaattttgagtttggggccagccttgactgctt
agagaaccttgctacaaacaaacaaacaaatcttcattaagaggacatta
gcctggaaagtttgggagcctttggctgccagcagagccttctcctgctg
atggagaggggaagctgaggtgacggtgggagagatccacagtctgcaag
agggaaacacttggccttttatggaagtaggatttcagaattagctggaa
gcttttataaacctccacagagcaggagggggcgcaggtaaagattctgc
cacagagctgaccttttggagaggaaagaccagcttaggaattttaagaa
gtgtttgcctttgcataatgcagcccaggtcctctgtgagcagaaaacag
ctctatgaccaagcagatccaagacagacagacagacagacagacaagaa
acagggttcaaggtcagctgagccctttgccctgtggcatttggttcttc
ccccccccaccccctcaaatctgggtttctgctctaatgaactccaggac
attaaaatgtgtgaataagagcttccggtcctcgaattcctcatctaatt
agagctgggttgagtgtgtgcagtaatgagctggctttcgcacactccgg
actaccccaaggcctccactgggaacatccctaacacagcagggtatggg
ggcgtactgagggcacacaaaagggtatactgagtcatttgcttttagag
tgctaggaggggtttggctctagacagctgagtcacgggtgctgacagta
gagagacaagactgggtagccaaggtgacaaagagagggctgtgtggcag
aagatgcagtagtaatgggaatgggg
aaattctagtttttgatgtgctggccatgtgatcttgggtgagtgacata
accagtctgagcctcaatttcctgctttgtgacacatgctggaaaaaaac
caagtctaagaaacgtgtatgtatgtatgtatgtatgtacatatgtatat
atgtatgtgtatatgtttgtatgtatgtgtatgtttgtatatatgtatgt
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_104011671_104012773
seq2: B6Ng01-143B21.b_48_1123

seq1  GAATTCCCAGTCTTGCTAGGTGTGGTGGCGCACTTGGGAGACAGAAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGTCTTGCTAGGTGTGGTGGCGCACTTGGGAGACAGAAACAG  50

seq1  GAGGATGTCTGTGAGTTCAAGGCCAGCCTGGTCTACAAAGCAAGTTACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGTCTGTGAGTTCAAGGCCAGCCTGGTCTACAAAGCAAGTTACAG  100

seq1  GACAGCCAGGGCTACACAGAAAAACCCTGTCCCACCCCCACCCCCCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGGGCTACACAGAAAAACCCTGTCCCACCCCCACCCCCCAAAA  150

seq1  TTCCCAGTTTAAGCTGATCATGGTGGTACACACCTTTAATCCTTGAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTTTAAGCTGATCATGGTGGTACACACCTTTAATCCTTGAGCCT  200

seq1  GGGAGACTGAGACAGGGGAATTTTGAGTTTGGGGCCAGCCTTGACTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACTGAGACAGGGGAATTTTGAGTTTGGGGCCAGCCTTGACTGCTT  250

seq1  AGAGAACCTTGCTACAAACAAACAAACAAATCTTCATTAAGAGGACATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACCTTGCTACAAACAAACAAACAAATCTTCATTAAGAGGACATTA  300

seq1  GCCTGGAAAGTTTGGGAGCCTTTGGCTGCCAGCAGAGCCTTCTCCTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAAAGTTTGGGAGCCTTTGGCTGCCAGCAGAGCCTTCTCCTGCTG  350

seq1  ATGGAGAGGGGAAGCTGAGGTGACGGTGGGAGAGATCCACAGTCTGCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAGGGGAAGCTGAGGTGACGGTGGGAGAGATCCACAGTCTGCAAG  400

seq1  AGGGAAACACTTGGCCTTTTATGGAAGTAGGATTTCAGAATTAGCTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACACTTGGCCTTTTATGGAAGTAGGATTTCAGAATTAGCTGGAA  450

seq1  GCTTTTATAAACCTCCACAGAGCAGGAGGGGGCGCAGGTAAAGATTCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTATAAACCTCCACAGAGCAGGAGGGGGCGCAGGTAAAGATTCTGC  500

seq1  CACAGAGCTGACCTTTTGGAGAGGAAAGACCAGCTTAGGAATTTTAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCTGACCTTTTGGAGAGGAAAGACCAGCTTAGGAATTTTAAGAA  550

seq1  GTGTTTGCCTTTGCATAATGCAGCCCAGGTCCTCTGTGAGCAGAAAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGCCTTTGCATAATGCAGCCCAGGTCCTCTGTGAGCAGAAAACAG  600

seq1  CTCTATGACCAAGCAGATCCAAGACAGACAGACAGACAGACAGACAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGACCAAGCAGATCCAAGACAGACAGACAGACAGACAGACAAGAA  650

seq1  ACAGGGTTCAAGGTCAGCTGAGCCCTTTGCCCTGTGGCATTTGGTTCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTCAAGGTCAGCTGAGCCCTTTGCCCTGTGGCATTTGGTTCTTC  700

seq1  CCCCCCCCACCCCCTCAAATCTGGGTTTCTGCTCTAATGAACTCCAGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCACCCCCTCAAATCTGGGTTTCTGCTCTAATGAACTCCAGGAC  750

seq1  ATTAAAATGTGTGAATAAGAGCTTCCGGTCCTCGAATTCCTCATCTAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATGTGTGAATAAGAGCTTCCGGTCCTCGAATTCCTCATCTAATT  800

seq1  AGAGCTGGGTTGAGTGTGTGCAGTAATGAGCTGGCTTTCGCACACTCCGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGGTTGAGTGTGTGCAGTAATGAGCTGGCTTTCGCACACTCCGG  850

seq1  ACTACCCCAAGGCCTCCACTGGGAACATCCCTAACACAAGCAGGGTATGG  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACTACCCCAAGGCCTCCACTGGGAACATCCCTAACAC-AGCAGGGTATGG  899

seq1  GGGCGTACTGAGGGCACACCAAAAGGGTATACTGAGTCATTTTGCTTTTA  950
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  GGGCGTACTGAGGGCACA-CAAAAGGGTATACTGAGTCA-TTTGCTTTTA  947

seq1  GAGTGCTAAGGAGGGGTTTTGGCTCTAAGGACAGCTGAGTCACCGGGTGC  1000
      ||||||| |||||||| ||||||||||  ||||||||||||| |||||||
seq2  GAGTGCT-AGGAGGGG-TTTGGCTCTA--GACAGCTGAGTCA-CGGGTGC  992

seq1  TGGACAAGGTTAGAAGAGACAAAGACTGTGTAGGCAAAGGTGGACCAGAA  1050
      | ||||    ||| |||||| ||||||| ||| || ||||| ||| |  |
seq2  T-GACA---GTAG-AGAGAC-AAGACTGGGTA-GCCAAGGT-GACAAAGA  1034

seq1  GAGGAGGGGCTGTGTGGCGAGAAAGGATGCAGGGTAGGTAGATGGGAATG  1100
      ||    |||||||||||| ||||  ||||||  ||| ||| |||||||||
seq2  GA----GGGCTGTGTGGC-AGAA--GATGCA--GTA-GTA-ATGGGAATG  1073

seq1  GGG  1103
      |||
seq2  GGG  1076

seq1: chr17_35682748_35682943
seq2: B6Ng01-143B21.g_186_273 (reverse)

seq1  ATACATACATATATAAACACATATACATACATACATACACATATACACAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACATATGCACATACACACATACATATACACATATACACACATACACATAT  100
                                                      ||
seq2  ------------------------------------------------AT  2

seq1  ACACACATAAATATACAAACACACAGATATACACATACTCACATACATAC  150
      ||| ||||  ||||||||||| ||| ||    ||||||  ||||  ||||
seq2  ACATACAT--ATATACAAACATACACAT----ACATACAAACAT--ATAC  44

seq1  ACATACATATATATACACATATACATACATACATACATACATACAC  196
      ||||||  ||||||||| || |||||||||||||||||||||||||
seq2  ACATAC--ATATATACATATGTACATACATACATACATACATACAC  88