BAC Information

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BAC

Clone NameB6Ng01-143C06
Chromosome17 (Build37)
Map Location 33,774,253 - 33,775,382
singlet/doubletsinglet
Overlap genePram1
Upstream geneEG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414
Downstream geneHnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143C06.bB6Ng01-143C06.g
ACCDH941154DH941155
length1,2591,132
definitionDH941154|Mus musculus domesticus DNA, BAC clone: B6Ng01-143C06, 5' end.DH941155|Mus musculus domesticus DNA, BAC clone: B6Ng01-143C06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgatcgtgagcccactgtcgtacttctctggctgtgaaatga
gttccttggtcagaagcaatactgtgtggaataccatgacgatagatgag
gcattctgtcagtccgtgaatggtggttttagcagaggcattacgtgcag
gaaaggcaaatccataaccagaataagtatctactccagtaagaacaaaa
cgctgtcctttccacgaaggaagtggtccaatgtagtcaacctgccacca
ggttgctggctggtcacctcgaggaatggtgccatatctggggctcagtg
tcggtttctgctgttggcagatctggcaatcagcagcagctgtagccagg
tcagctttggtgagtggaagcccgtgttgctgagcccaagcataacctcc
atctcgaccaccatggccactttgttcatgtgcccattgagcaatgacag
ggatggctggggagagaggctgactgtccacagaacgggtcatcttatcc
acttgattattgaactcctcctcggctgaagtcaccttttggtgagcatt
tacatgggacacaaatatcttcacatcctttgcccatttggagagatcta
tccacatacttcttccccagatgtctttctcaccaattttccaattgtga
tctttccaagtgcctgaccatccagccaatccattggctacagcccatga
gtcagtgaataatcgtacatctggccatttcttcttgcaaacaaactgta
ataccatgtgtactgcacgaagttctgcccactgtgaagatttcccttca
cctgtgtctttcaaggttgtcccagaaaggggttgtaatgctgcagctgt
ccacttctgggtggtgcctgcataaacgtgcagagccatcagtaaaccag
gctctagtcttctctcttcggtcagttgatcatagggaacaccccatgag
ctataggtgcatgcttggcagcagatggcattgtacaggagtagaacata
ggcatttgagcacttcttcatgtacttgcttgtgcttcagacctgctctg
gcccgatcacgtatatacaactacatttgatatagaactgctgctgtgcc
cttccatatgactgcaaggttatagtacccagctctagtagtgaaatcaa
ggtccaataggacttgggtgtcattggtcaactgtcgttccatagtccaa
tgtagcagaggcgtttcagggagagaataatgttctcgcatagtgatgga
gtaatgtac
gaattctattctgttcccaaactgagaatcatacctctgaaccctgctga
gtgttctttgttcctgtggactgaatcacgtgtcagggctctcctttcct
atatctacctttgtcccactttgggcttcattttcctgcaatccagtttt
cttgtttctcctctctctgcttcctttaaccactgtgaacttgagaggtc
ctaaaaccccataccttcacagcaacagtgatgtcccttcagcccaggac
ttagacatcttttaatgccacccacccataagtctgcttatcccagttga
tgatgctttgggtgcatagccctggctgatggggcatttgtcaccttaac
agggaagtcctgttgagagtacaaatggtgaaacaaggtagatgaagcaa
tacaggaggacagatatgtcctcaccattgcaacagccatatcctaggtc
tacctctttagagacgtcttaagacccagagaaagccataaaatccccac
taaggtgctgtgactgtcctgagtttgtcctaagcttgcctcttcagaga
caaagcttgtcaggaccccaaagtgttaaaactaagggggacaataggga
atcaagaggctagtaggagctaggaaacttgtgctttatagatgtgctta
ggtctaatgacctgactttggggacagtagtggacaggcaggaactcaag
gaggggacagaaaggctatctccgcctcctttcctcctctgccctcccca
gcccaacagctccgacttggtgtgtcagcccgtggagcaaaaaaccacac
tttaacttcctcaggcagaaagcctaagctcagagctcattcaccctggt
ggttcatcatcccctgaaagccatggtgagtcctcaagcccccattggaa
gttcattcaggtacaagggtcccaagtagaaactggggaactggtaaata
tgccctcatgggtaaccttgccagaacagaggctagacagtcttgggatg
aaaggcaccaggtaaagataagaaacaaccaggaatatagctggagcctt
tggtggaacagctttgtatctgtgtatgccaagcatgtggtgcgggtatg
gtctgcctggaaagttataccctcattccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_33774253_33775382
seq2: B6Ng01-143C06.g_71_1202

seq1  GAATTCTATTCTGTTCCCAAACTGAGAATCATACCTCTGAACCCTGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTCTGTTCCCAAACTGAGAATCATACCTCTGAACCCTGCTGA  50

seq1  GTGTTCTTTGTTCCTGTGGACTGAATCACGTGTCAGGGCTCTCCTTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTTGTTCCTGTGGACTGAATCACGTGTCAGGGCTCTCCTTTCCT  100

seq1  ATATCTACCTTTGTCCCACTTTGGGCTTCATTTTCCTGCAATCCAGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTACCTTTGTCCCACTTTGGGCTTCATTTTCCTGCAATCCAGTTTT  150

seq1  CTTGTTTCTCCTCTCTCTGCTTCCTTTAACCACTGTGAACTTGAGAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTCTCCTCTCTCTGCTTCCTTTAACCACTGTGAACTTGAGAGGTC  200

seq1  CTAAAACCCCATACCTTCACAGCAACAGTGATGTCCCTTCAGCCCAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACCCCATACCTTCACAGCAACAGTGATGTCCCTTCAGCCCAGGAC  250

seq1  TTAGACATCTTTTAATGCCACCCACCCATAAGTCTGCTTATCCCAGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACATCTTTTAATGCCACCCACCCATAAGTCTGCTTATCCCAGTTGA  300

seq1  TGATGCTTTGGGTGCATAGCCCTGGCTGATGGGGCATTTGTCACCTTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTTTGGGTGCATAGCCCTGGCTGATGGGGCATTTGTCACCTTAAC  350

seq1  AGGGAAGTCCTGTTGAGAGTACAAATGGTGAAACAAGGTAGATGAAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTCCTGTTGAGAGTACAAATGGTGAAACAAGGTAGATGAAGCAA  400

seq1  TACAGGAGGACAGATATGTCCTCACCATTGCAACAGCCATATCCTAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAGGACAGATATGTCCTCACCATTGCAACAGCCATATCCTAGGTC  450

seq1  TACCTCTTTAGAGACGTCTTAAGACCCAGAGAAAGCCATAAAATCCCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTTTAGAGACGTCTTAAGACCCAGAGAAAGCCATAAAATCCCCAC  500

seq1  TAAGGTGCTGTGACTGTCCTGAGTTTGTCCTAAGCTTGCCTCTTCAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGCTGTGACTGTCCTGAGTTTGTCCTAAGCTTGCCTCTTCAGAGA  550

seq1  CAAAGCTTGTCAGGACCCCAAAGTGTTAAAACTAAGGGGGACAATAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTTGTCAGGACCCCAAAGTGTTAAAACTAAGGGGGACAATAGGGA  600

seq1  ATCAAGAGGCTAGTAGGAGCTAGGAAACTTGTGCTTTATAGATGTGCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAGGCTAGTAGGAGCTAGGAAACTTGTGCTTTATAGATGTGCTTA  650

seq1  GGTCTAATGACCTGACTTTGGGGACAGTAGTGGACAGGCAGGAACTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAATGACCTGACTTTGGGGACAGTAGTGGACAGGCAGGAACTCAAG  700

seq1  GAGGGGACAGAAAGGCTATCTCCGCCTCC-TTCCTCCTCTGCCCTCCCCA  749
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAGGGGACAGAAAGGCTATCTCCGCCTCCTTTCCTCCTCTGCCCTCCCCA  750

seq1  GCCCAACAGCTCCGACTTGGTGTGTCAGCCCGTGGAGC-AGAAACCACAC  798
      |||||||||||||||||||||||||||||||||||||| | |||||||||
seq2  GCCCAACAGCTCCGACTTGGTGTGTCAGCCCGTGGAGCAAAAAACCACAC  800

seq1  -TTAACTTCCTCAAGGCAG-AAGCCTAAGCTCAGAGCTCATTCACCCT-G  845
       ||||||||||| |||||| |||||||||||||||||||||||||||| |
seq2  TTTAACTTCCTC-AGGCAGAAAGCCTAAGCTCAGAGCTCATTCACCCTGG  849

seq1  TGGTTCATCATCCCCTG-AAGCCATGGTGAGTCCTCAAGCCCCCATTGGA  894
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGGTTCATCATCCCCTGAAAGCCATGGTGAGTCCTCAAGCCCCCATTGGA  899

seq1  AGTTCATTCAGGTAACAAGGGTCCCAAGTAGAAACTGGGGAACTGGTAAA  944
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTCAGGT-ACAAGGGTCCCAAGTAGAAACTGGGGAACTGGTAAA  948

seq1  TATGCCCTCATGGGTAACCTAG-CAGAACAGA-GCTAGAACAGTCTTGGG  992
      |||||||||||||||||||| | ||||||||| ||||| |||||||| ||
seq2  TATGCCCTCATGGGTAACCTTGCCAGAACAGAGGCTAG-ACAGTCTT-GG  996

seq1  GATGAGATGGCA-CAGGAAAAGATAAGAAACAACCAAGGCATAATAGCTT  1041
      ||||| | |||| |||| ||||||||||||||||| ||| || |||||| 
seq2  GATGA-AAGGCACCAGGTAAAGATAAGAAACAACC-AGGAAT-ATAGCTG  1043

seq1  GAG-CTCTTGTGGACCAGCTTTGTATCTGTGACTGCAAGGCAGTGTGGTG  1090
      ||| || | ||||| ||||||||||||||||  ||| | ||| |||||||
seq2  GAGCCTTTGGTGGAACAGCTTTGTATCTGTGTATGCCAAGCA-TGTGGTG  1092

seq1  CTGGTTGGGTCTGCCTGGAATGATATACCCTCAATCCAGG  1130
      | |||  ||||||||||||| | |||||||||| ||||||
seq2  CGGGTATGGTCTGCCTGGAAAGTTATACCCTCATTCCAGG  1132