BAC Information

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BAC

Clone NameB6Ng01-143G24
Chromosome17 (Build37)
Map Location 59,040,953 - 59,194,376
singlet/doubletdoublet
Overlap gene2610034M16Rik, Nudt12, 4930505H01Rik
Upstream geneCntnap5c, LOC620408, EG545216, LOC668648
Downstream geneLOC100043537, LOC100043542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143G24.bB6Ng01-143G24.g
ACCDH941372DH941373
length1,0701,047
definitionDH941372|Mus musculus domesticus DNA, BAC clone: B6Ng01-143G24, 5' end.DH941373|Mus musculus domesticus DNA, BAC clone: B6Ng01-143G24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,040,953 - 59,042,032)(59,193,323 - 59,194,376)
sequence
gaattccatatttatgaatctgcctactttctaaaacttattgtaactct
ttcagatcaatagtcacacacactcccacccccatcagagtcattcacag
gaaaaagatctttaaaggaaatcagcccccagaacattctttgtcataat
gtacccacaattcttttctagtcttgatgtattttacttttattttgttt
ttgttagaattgcagaatctaagaacacactgtcgtgagaatcactgtgt
ccaagaataaaacaggaaacactaataaatggatcatactattgacccca
ctggcatgttacagttgtttagattttaaactaaccagattaagatcatg
gaatccttgtgatacatgtcccagagacttagatataggaagaaaataat
gtagcttgtatttttatatctcataatatttgcctaacacacagtaatta
tttcagctttagaagtatttcatatatggcctgtctgtcataccatcatg
cagtttgtacttctgtcacagttgtcctgctactctatgcaacatgacat
ttctggagttaagctgaggctctgtttttaagtctatcgataatattatt
gtaatccagttgtgcaaatacaacttagctatgactttaagacaactggt
ccctccttcaggctcttagttcatcgtgaacagtcactcttttgacattg
ttctagactgtgagatacaaacacacttcaaacaccttgtgctcaaaact
gagagcagcatgtgagttctacaatatggaggcacactcttcactcatgg
gccagatgtgtgctcactctcttcagggcagtgttaaattagcttgtagt
taaatatatgggatgaattatcttttccttatttaaaaagaatatatgct
ttgtattgtgtggggcatgcatattgtgcccaacataaaagcattctgtg
tgtacgtagatctcaaacttaagatgaccacccatttatttctttcctta
ctaatacttaaactaatcaggtcctccaatcactgagagtatgatatgtg
tgcaatatgtgcaagtgtat
gaattcattaaggattaatttatcctctaagctaaccttcttcctcagct
tcaatgataagtgtgaaggtcagatgagtagtatcccattgggtatcaca
agccccagtgataacttctaactttgatctataattctatggtgtatttg
accaccccagagctctcaataattatctccctataatgaaactgcacaga
ggtgaatcaaaggctctgctattcttagaacccagcgctaaagttagttg
tccatttctaccagcaatctcagtaagtttgcctcccaagtttttgccaa
tgcggagaaccaggttacccaaccttctcctgactcagctctgatgaatg
atggtcatccaacaagaaggaagattctttgcgttgtcctgtggcctaag
gattctgagagttaaaaactaagggattctgtgagctttggagcatccct
ttagttgatgacaacctatgagaacaaggaaaatgttcaccgactcatta
tctcctatgagtcacctcaaaattagattctatttttaaaacctgacata
aaatgaccacagagattgtttctaaaagtagttccttcagctataacttt
aaaagaagctgttcaagaatcatatatttaggtttcctctcattactaat
aggagacagggaataaaattttctatttgtattacagaataaataagaat
gatccattacattttttttaaaagttaacatcacttaattgtgtaactaa
gaccacacagtgaaaatgtataaaacattactgcacagttagaagcaatt
tgcatttttttcttctttccatctactaatatttataaaagcattaattt
ttgtttaggtgaagttgtgccttttctatgttacagaggacaattattgt
attagtgaacatacagatctgtcacaaacctgataaataatttaatgcca
aatttgaaaataatggtaattttcattctgtatttagaaaagatgatttt
cagcactttgctctttcaaaatttcccaacctttcctaagaatcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_59040953_59042032
seq2: B6Ng01-143G24.b_49_1118

seq1  GAATTCCATATTTATGAATCTGCCTACTTTCTAAAACTTATTGTAACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATTTATGAATCTGCCTACTTTCTAAAACTTATTGTAACTCT  50

seq1  TTCAGATCAATAGTCACACACACTCCCACCCCCATCAGAGTCATTCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATCAATAGTCACACACACTCCCACCCCCATCAGAGTCATTCACAG  100

seq1  GAAAAAGATCTTTAAAGGAAATCAGCCCCCAGAACATTCTTTGTCATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGATCTTTAAAGGAAATCAGCCCCCAGAACATTCTTTGTCATAAT  150

seq1  GTACCCACAATTCTTTTCTAGTCTTGATGTATTTTACTTTTATTTTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCACAATTCTTTTCTAGTCTTGATGTATTTTACTTTTATTTTGTTT  200

seq1  TTGTTAGAATTGCAGAATCTAAGAACACACTGTCGTGAGAATCACTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGAATTGCAGAATCTAAGAACACACTGTCGTGAGAATCACTGTGT  250

seq1  CCAAGAATAAAACAGGAAACACTAATAAATGGATCATACTATTGACCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAATAAAACAGGAAACACTAATAAATGGATCATACTATTGACCCCA  300

seq1  CTGGCATGTTACAGTTGTTTAGATTTTAAACTAACCAGATTAAGATCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATGTTACAGTTGTTTAGATTTTAAACTAACCAGATTAAGATCATG  350

seq1  GAATCCTTGTGATACATGTCCCAGAGACTTAGATATAGGAAGAAAATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTTGTGATACATGTCCCAGAGACTTAGATATAGGAAGAAAATAAT  400

seq1  GTAGCTTGTATTTTTATATCTCATAATATTTGCCTAACACACAGTAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTGTATTTTTATATCTCATAATATTTGCCTAACACACAGTAATTA  450

seq1  TTTCAGCTTTAGAAGTATTTCATATATGGCCTGTCTGTCATACCATCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCTTTAGAAGTATTTCATATATGGCCTGTCTGTCATACCATCATG  500

seq1  CAGTTTGTACTTCTGTCACAGTTGTCCTGCTACTCTATGCAACATGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTACTTCTGTCACAGTTGTCCTGCTACTCTATGCAACATGACAT  550

seq1  TTCTGGAGTTAAGCTGAGGCTCTGTTTTTAAGTCTATCGATAATATTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTTAAGCTGAGGCTCTGTTTTTAAGTCTATCGATAATATTATT  600

seq1  GTAATCCAGTTGTGCAAATACAACTTAGCTATGACTTTAAGACAACTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCAGTTGTGCAAATACAACTTAGCTATGACTTTAAGACAACTGGT  650

seq1  CCCTCCTTCAGGCTCTTAGTTCATCGTGAACAGTCACTCTTTTGACATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTTCAGGCTCTTAGTTCATCGTGAACAGTCACTCTTTTGACATTG  700

seq1  TTCTAGACTGTGAGATACAAACACACTTCAAACACCTTGTGCTCAAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGACTGTGAGATACAAACACACTTCAAACACCTTGTGCTCAAAACT  750

seq1  GAGAGCAGCATGTGAGTTCTACAATATGGAGGCACACTCTTCACTCAT-G  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAGAGCAGCATGTGAGTTCTACAATATGGAGGCACACTCTTCACTCATGG  800

seq1  GCCAGATGTGTGCTCACTCTCTTCAGGGCAGTGTTAAATTAGCTTGTAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATGTGTGCTCACTCTCTTCAGGGCAGTGTTAAATTAGCTTGTAGT  850

seq1  TAAATATAT-GGATGAATTATC-TTTCCTTATTTAAAAAAGAATATAATG  897
      ||||||||| |||||||||||| ||||||||||| ||||||||||| |||
seq2  TAAATATATGGGATGAATTATCTTTTCCTTATTT-AAAAAGAATAT-ATG  898

seq1  CTTTGTATTGTGTGGGGCATTGCAATATTGTGCCCAACATAAAAGCATTC  947
      ||||||||||||||||||| ||| ||||||||||||||||||||||||||
seq2  CTTTGTATTGTGTGGGGCA-TGC-ATATTGTGCCCAACATAAAAGCATTC  946

seq1  TGTTGTGTAACGTAAGATTCTCAAACTTAAAGATGAACCACCCATTTATT  997
      || ||||| |||| ||| |||||||||| |||||| ||||||||||||||
seq2  TG-TGTGT-ACGT-AGA-TCTCAAACTT-AAGATG-ACCACCCATTTATT  990

seq1  TCTTTCCTTACTTAATACTTAAAACTAATCA-GTCCTCCAATCCACTGAG  1046
      ||||||||||| |||||||| |||||||||| |||||||||| |||||| 
seq2  TCTTTCCTTAC-TAATACTT-AAACTAATCAGGTCCTCCAAT-CACTGA-  1036

seq1  GAGTATGTATATGTGTGC-ATATGTGCATGTGTAT  1080
      ||||||| |||||||||| ||||||||| ||||||
seq2  GAGTATG-ATATGTGTGCAATATGTGCAAGTGTAT  1070

seq1: chr17_59193323_59194376
seq2: B6Ng01-143G24.g_68_1114 (reverse)

seq1  ACTGATTCTTAGGAAAAGGTTTGGGAAATGTTTTGAAAGAGCAAAGTGCT  50
      ||||||||||||||||  | ||||||||  ||||||||||||||||||||
seq2  ACTGATTCTTAGGAAA--GGTTGGGAAA--TTTTGAAAGAGCAAAGTGCT  46

seq1  GAAAATCATC-TTTCTAAATACAGAATGAAAAATTACCATTTATTTTCAA  99
      |||||||||| ||||||||||||||||| |||||||||| |||||||| |
seq2  GAAAATCATCTTTTCTAAATACAGAATG-AAAATTACCA-TTATTTTC-A  93

seq1  AATTTGGCATTAAAATTATTTATCAGGTTTGTGGAACAGATCTGTATGTT  149
      ||||||||||| |||||||||||||||||||||  |||||||||||||||
seq2  AATTTGGCATT-AAATTATTTATCAGGTTTGTG--ACAGATCTGTATGTT  140

seq1  CACTAATACAATAATTTGTCCTCTGTAACATAG-AAAGGCACAAACTTCA  198
      |||||||||||||| |||||||||||||||||| |||||||| |||||||
seq2  CACTAATACAATAA-TTGTCCTCTGTAACATAGAAAAGGCAC-AACTTCA  188

seq1  CCTAAACAAAATATAATGCTTTTATAAATATTAGTAGATGGAAAGAAG-A  247
      |||||||||||  ||||||||||||||||||||||||||||||||||| |
seq2  CCTAAACAAAAATTAATGCTTTTATAAATATTAGTAGATGGAAAGAAGAA  238

seq1  AAAAATGCAAATTGCTTCTAACTGTGCAGTAATGTTTTATACATTTTCAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCAAATTGCTTCTAACTGTGCAGTAATGTTTTATACATTTTCAC  288

seq1  TGTGTGGTCTTAGTTACACAATTAAGTGATGTTAACTTTT-AAAAAAATG  346
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTGTGGTCTTAGTTACACAATTAAGTGATGTTAACTTTTAAAAAAAATG  338

seq1  TAATGGATCATTCTTATTTATTCTGTAATACAAATAGAAAATTTTATTCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGATCATTCTTATTTATTCTGTAATACAAATAGAAAATTTTATTCC  388

seq1  CTGTCTCCTATTAGTAATGAGAGGAAACCTAAATATATGATTCTTGAACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCTATTAGTAATGAGAGGAAACCTAAATATATGATTCTTGAACA  438

seq1  GCTTCTTTTAAAGTTATAGCTGAAGGAACTAC-TTTAGAAACAATCTCTG  495
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCTTCTTTTAAAGTTATAGCTGAAGGAACTACTTTTAGAAACAATCTCTG  488

seq1  TGGTCATTTTATGTCAGGTTTTAAAAATAGAATCTAATTTTGAGGTGACT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATTTTATGTCAGGTTTTAAAAATAGAATCTAATTTTGAGGTGACT  538

seq1  CATAGGAGATAATGAGTCGGTGAACATTTTCCTTGTTCTCATAGGTTGTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGAGATAATGAGTCGGTGAACATTTTCCTTGTTCTCATAGGTTGTC  588

seq1  ATCAACTAAAGGGATGCTCCAAAGCTCACAGAATCCCTTAGTTTTTAACT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTAAAGGGATGCTCCAAAGCTCACAGAATCCCTTAGTTTTTAACT  638

seq1  CTCAGAATCCTTAGGCCACAGGACAACGCAAAGAATCTTCCTTCTTGTTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAATCCTTAGGCCACAGGACAACGCAAAGAATCTTCCTTCTTGTTG  688

seq1  GATGACCATCATTCATCAGAGCTGAGTCAGGAGAAGGTTGGGTAACCTGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCATCATTCATCAGAGCTGAGTCAGGAGAAGGTTGGGTAACCTGG  738

seq1  TTCTCCGCATTGGCAAAAACTTGGGAGGCAAACTTACTGAGATTGCTGGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCGCATTGGCAAAAACTTGGGAGGCAAACTTACTGAGATTGCTGGT  788

seq1  AGAAATGGACAACTAACTTTAGCGCTGGGTTCTAAGAATAGCAGAGCCTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGACAACTAACTTTAGCGCTGGGTTCTAAGAATAGCAGAGCCTT  838

seq1  TGATTCACCTCTGTGCAGTTTCATTATAGGGAGATAATTATTGAGAGCTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCACCTCTGTGCAGTTTCATTATAGGGAGATAATTATTGAGAGCTC  888

seq1  TGGGGTGGTCAAATACACCATAGAATTATAGATCAAAGTTAGAAGTTATC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGGTCAAATACACCATAGAATTATAGATCAAAGTTAGAAGTTATC  938

seq1  ACTGGGGCTTGTGATACCCAATGGGATACTACTCATCTGACCTTCACACT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGCTTGTGATACCCAATGGGATACTACTCATCTGACCTTCACACT  988

seq1  TATCATTGAAGCTGAGGAAGAAGGTTAGCTTAGAGGATAAATTAATCCTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTGAAGCTGAGGAAGAAGGTTAGCTTAGAGGATAAATTAATCCTT  1038

seq1  AATGAATTC  1054
      |||||||||
seq2  AATGAATTC  1047