BAC Information

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BAC

Clone NameB6Ng01-143J20
Chromosome17 (Build37)
Map Location 30,417,026 - 30,567,744
singlet/doubletdoublet
Overlap geneBtbd9, EG623169
Upstream geneBC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888, Zfand3
Downstream geneGlo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143J20.bB6Ng01-143J20.g
ACCDH941505DH941506
length1,0631,146
definitionDH941505|Mus musculus domesticus DNA, BAC clone: B6Ng01-143J20, 5' end.DH941506|Mus musculus domesticus DNA, BAC clone: B6Ng01-143J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,417,026 - 30,418,098)(30,566,586 - 30,567,744)
sequence
gaattcacttataaatggtcagtcaaagacattcataacctcaaaaaagt
ataaataacattcttagacaaccaacctttaagttcctcagaaatattgt
ctttcactaaacatttccaaaaattctttaccaggcacgaagcaccatta
ggtaaatcttcgaatctacttaagctcaccccatgaccttcaatgtgtgc
cttggctgggtacctggggttctttcagtctcaagctgatagccctctgc
atatgtactggagggcttggatgactgtgcgccacatggcattctctctg
aaaactgcctgcagtcccatttcaaaacggtgtgggagttcctgggccca
gtgtgtcctgcaatcctggttgcagcctaggaagcagacgcttgctgagc
taatcacacttcctgcctcaaaaccagagggtgtggcctcaattggccct
gccccttacatgagataatgaggaggcgaggaggcagacactcctgggcg
gcaccaggagggaaggagccgtggacacctagtggggctgctgctgacac
aggcaggcccaccatgtgccaccagggttcatgagaaattacccaatcac
aaggaagctccctttatggcttaaaccatctttacttggcttctgtcact
tggaaccaatcaagctaagagcacacttgagcaaggtcttcctgctgcag
gagaggtggtttctgtagaggttgagagaggctggactgaggtgtgggat
gacaaggcgaggggtgaggactggctcagtgagggagctctgcagggact
ggactgtgcactgactaattaccagcacacttcaaaaccaccaagcaggg
gggttggggagcttgaccagagggaaaaggaggccacagtgcaggtccag
gatccaaggggcagggaagtactgtgtactactgggctgaggggtagact
gagcagaacagagatctggaaacagatcagatgctgcaacagtggggatc
taaggcactggagcctcatgaagaatttagtctcacctgtctgggtgcag
aagacagaccaat
gaattctcagttaagggtgactggtcagggactctccatttgatactcac
tggcatcttgcttggcctgaaacagaggcaggaggctgccagcctcacct
ctcagaggtcacaggattgccatagctcattctgcttacactgccctccc
cacatactcttccatctgtttctttggtgatggtgtcatttagaaacatc
acacatgatcatgataaaatgatggagctccaagagctgacctgcatgga
ctgggacagaggaatggaatctgaacactaagggtctccaagtgggtgtc
tctcctgtgttgacagtcaatccggaagaccctgctccacacttgatact
cagattcagcagtgtattcagatgcaggaactataactcaccccatcttc
agcatggcctttaattttctcagatgggcttcctctggcctggatcatgg
ctgtgttcattaggcctggtctggtgttacaacactgtactgggccacga
tgggtttgaaatggattctcatgcctgggctacctgctttatttcctttc
ctcattggttatttttccttgttcttatagaaaagagaacaaagcccatt
taataactgcaaagcttactgtttgcagagaccctaaagattactagcaa
caaaatgtatttatgtctttaataaggattgaagtttactattcaccaaa
tgtgtctcccgctcttctttctgtgttcttttctgtgggcatgtctggtc
ttgggcagaagaatgccggctacaaggatagtacctgccatttgtaaaat
tttgaggtaattgctaattttgatacacatgggcaattttgtgttagaga
gttttgtgtggcttccaactatcaagatgggaagaatagattataatgaa
tgatgccagctgtgagacttgttacatagacagaataggctatggaacag
aggtgatatattgtggaaatgaaattgaccatttgtgcggttcaaataaa
attgttcattgaaatattatatcgcctgtaagtgactttcagaagaatcc
tctcaaagatgatgagccttaggcccaaggcacgaaagctttctagagca
aatcctaaaaccacgtgcctctctctggtgcccttccggatgcgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_30417026_30418098
seq2: B6Ng01-143J20.b_48_1110

seq1  GAATTCACTTATAAATGGTCAGTCAAAGACATTCATAACCTCAAAAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTATAAATGGTCAGTCAAAGACATTCATAACCTCAAAAAAGT  50

seq1  ATAAATAACATTCTTAGACAACCAACCTTTAAGTTCCTCAGAAATATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAACATTCTTAGACAACCAACCTTTAAGTTCCTCAGAAATATTGT  100

seq1  CTTTCACTAAACATTTCCAAAAATTCTTTACCAGGCACGAAGCACCATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACTAAACATTTCCAAAAATTCTTTACCAGGCACGAAGCACCATTA  150

seq1  GGTAAATCTTCGAATCTACTTAAGCTCACCCCATGACCTTCAATGTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATCTTCGAATCTACTTAAGCTCACCCCATGACCTTCAATGTGTGC  200

seq1  CTTGGCTGGGTACCTGGGGTTCTTTCAGTCTCAAGCTGATAGCCCTCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTGGGTACCTGGGGTTCTTTCAGTCTCAAGCTGATAGCCCTCTGC  250

seq1  ATATGTACTGGAGGGCTTGGATGACTGTGCGCCACATGGCATTCTCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTACTGGAGGGCTTGGATGACTGTGCGCCACATGGCATTCTCTCTG  300

seq1  AAAACTGCCTGCAGTCCCATTTCAAAACGGTGTGGGAGTTCCTGGGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGCCTGCAGTCCCATTTCAAAACGGTGTGGGAGTTCCTGGGCCCA  350

seq1  GTGTGTCCTGCAATCCTGGTTGCAGCCTAGGAAGCAGACGCTTGCTGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCCTGCAATCCTGGTTGCAGCCTAGGAAGCAGACGCTTGCTGAGC  400

seq1  TAATCACACTTCCTGCCTCAAAACCAGAGGGTGTGGCCTCAATTGGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACACTTCCTGCCTCAAAACCAGAGGGTGTGGCCTCAATTGGCCCT  450

seq1  GCCCCTTACATGAGATAATGAGGAGGCGAGGAGGCAGACACTCCTGGGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTACATGAGATAATGAGGAGGCGAGGAGGCAGACACTCCTGGGCG  500

seq1  GCACCAGGAGGGAAGGAGCCGTGGACACCTAGTGGGGCTGCTGCTGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGGAGGGAAGGAGCCGTGGACACCTAGTGGGGCTGCTGCTGACAC  550

seq1  AGGCAGGCCCACCATGTGCCACCAGGGTTCATGAGAAATTACCCAATCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCCCACCATGTGCCACCAGGGTTCATGAGAAATTACCCAATCAC  600

seq1  AAGGAAGCTCCCTTTATGGCTTAAACCATCTTTACTTGGCTTCTGTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGCTCCCTTTATGGCTTAAACCATCTTTACTTGGCTTCTGTCACT  650

seq1  TGGAACCAATCAAGCTAAGAGCACACTTGAGCAAGGTCTTCCTGCTGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACCAATCAAGCTAAGAGCACACTTGAGCAAGGTCTTCCTGCTGCAG  700

seq1  GAGAGGTGGTTTCTGTAGAGGTTGAGAGAGGCTGGACTGAGGTGTGGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGGTTTCTGTAGAGGTTGAGAGAGGCTGGACTGAGGTGTGGGAT  750

seq1  GACAAGGCGAGGGGTGAGGACTGGCTCAGTGAGGGAGCTCTGCAGGGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGCGAGGGGTGAGGACTGGCTCAGTGAGGGAGCTCTGCAGGGACT  800

seq1  GGACTGTGCACTGACTAATTACCAAGCACACTTCAAAACCACCAAGCAGG  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGACTGTGCACTGACTAATTACC-AGCACACTTCAAAACCACCAAGCAGG  849

seq1  GGGGTTGGGGAGCTTGACCAGAGGGAAAAGGAGGCCACAGTGCAGGTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGGGTTGGGGAGCTTGACCAGAGGGAAAAGGAGGCCACAGTGCAGGTCC-  898

seq1  AGGATCCAAGGGGCAGGGAAGTACTGTGTACTACTGGGCTGAGGGGTAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCAAGGGGCAGGGAAGTACTGTGTACTACTGGGCTGAGGGGTAGA  948

seq1  CTGAAGCCAGAACAGAGATCTGGAAACAGATCAGATGCTGCAACCAAGTG  1000
      ||||   |||||||||||||||||||||||||||||||||||||  ||||
seq2  CTGA--GCAGAACAGAGATCTGGAAACAGATCAGATGCTGCAAC--AGTG  994

seq1  GGGATCTAAGGCACTTGAGCCTCATTGAAGAATATAGTTCTCA-CTGTTC  1049
      ||||||||||||||| |||||||| |||||||| ||| ||||| ||||  
seq2  GGGATCTAAGGCACTGGAGCCTCA-TGAAGAATTTAG-TCTCACCTGTCT  1042

seq1  TGGTGCAAAGAAGACAGACACAAT  1073
       |||||  ||||||||||| ||||
seq2  GGGTGC--AGAAGACAGAC-CAAT  1063

seq1: chr17_30566586_30567744
seq2: B6Ng01-143J20.g_68_1213 (reverse)

seq1  CACGCATCCGGAGGAGGGCACAGAAGGAAGGCCAGTGTGTTTTAAGGATT  50
      ||||||||||||  |||||||   ||  ||||  ||| ||||| ||||||
seq2  CACGCATCCGGA--AGGGCACCAGAGAGAGGCACGTG-GTTTT-AGGATT  46

seq1  CTGCTCTGAAAAGACTTTCGTGGCTTGTGGCCTTAAAGCTTCATCATCCT  100
       ||||||  |||| |||||||| |||| |||||  |||  ||||||| ||
seq2  -TGCTCTAGAAAG-CTTTCGTGCCTTG-GGCCT--AAGGCTCATCAT-CT  90

seq1  TTGAGA-GATTCTTCTGGAAGGTCACTAACAGGCGATATTATCATTTCAA  149
      |||||| ||||||||| ||| |||||| ||||||||||| || |||||||
seq2  TTGAGAGGATTCTTCT-GAAAGTCACTTACAGGCGATATAAT-ATTTCAA  138

seq1  TGGAACCATTTTAATTTGGACCGCACAAATGGTCAATTTTCATTTCCAC-  198
      | |||| ||||| ||||| ||||||||||||||||| |||||||||||| 
seq2  T-GAACAATTTT-ATTTGAACCGCACAAATGGTCAA-TTTCATTTCCACA  185

seq1  ATATATCACCTCTGTTCCATAGCCTATTCTGTCTATGTAACCAAGTCTCA  248
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATATATCACCTCTGTTCCATAGCCTATTCTGTCTATGTAA-CAAGTCTCA  234

seq1  CAGCTGGCATCATTCATTATAATCTATTCTTCCCATCTTGATAGTTGGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGCATCATTCATTATAATCTATTCTTCCCATCTTGATAGTTGGAA  284

seq1  GCCACACAAAACTCTCTAACACAAAATTGCCCATGTGTATCAAAATTAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACAAAACTCTCTAACACAAAATTGCCCATGTGTATCAAAATTAGC  334

seq1  AATTACCTCAAAATTTTACAAATGGCAGGTACTATCC-TGTAGCCGGCAT  397
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATTACCTCAAAATTTTACAAATGGCAGGTACTATCCTTGTAGCCGGCAT  384

seq1  TCTTCTGCCCAAGACCAGACATGCCCACAGAAAAGAACACAGAAAGAAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGCCCAAGACCAGACATGCCCACAGAAAAGAACACAGAAAGAAGA  434

seq1  GCGGGAGACACATTTGGTGAATAGTAAACTTCAATCCTTATTAAAGACAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGAGACACATTTGGTGAATAGTAAACTTCAATCCTTATTAAAGACAT  484

seq1  AAATACATTTTGTTGCTAGTAATCTTTAGGGTCTCTGCAAACAGTAAGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATTTTGTTGCTAGTAATCTTTAGGGTCTCTGCAAACAGTAAGCT  534

seq1  TTGCAGTTATTAAATGGGCTTTGTTCTCTTTTCTATAAGAACAAGGAAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTATTAAATGGGCTTTGTTCTCTTTTCTATAAGAACAAGGAAAA  584

seq1  ATAACCAATGAGGAAAGGAAATAAAGCAGGTAGCCCAGGCATGAGAATCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCAATGAGGAAAGGAAATAAAGCAGGTAGCCCAGGCATGAGAATCC  634

seq1  ATTTCAAACCCATCGTGGCCCAGTACAGTGTTGTAACACCAGACCAGGCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAACCCATCGTGGCCCAGTACAGTGTTGTAACACCAGACCAGGCC  684

seq1  TAATGAACACAGCCATGATCCAGGCCAGAGGAAGCCCATCTGAGAAAATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAACACAGCCATGATCCAGGCCAGAGGAAGCCCATCTGAGAAAATT  734

seq1  AAAGGCCATGCTGAAGATGGGGTGAGTTATAGTTCCTGCATCTGAATACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCATGCTGAAGATGGGGTGAGTTATAGTTCCTGCATCTGAATACA  784

seq1  CTGCTGAATCTGAGTATCAAGTGTGGAGCAGGGTCTTCCGGATTGACTGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAATCTGAGTATCAAGTGTGGAGCAGGGTCTTCCGGATTGACTGT  834

seq1  CAACACAGGAGAGACACCCACTTGGAGACCCTTAGTGTTCAGATTCCATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAGGAGAGACACCCACTTGGAGACCCTTAGTGTTCAGATTCCATT  884

seq1  CCTCTGTCCCAGTCCATGCAGGTCAGCTCTTGGAGCTCCATCATTTTATC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTCCCAGTCCATGCAGGTCAGCTCTTGGAGCTCCATCATTTTATC  934

seq1  ATGATCATGTGTGATGTTTCTAAATGACACCATCACCAAAGAAACAGATG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCATGTGTGATGTTTCTAAATGACACCATCACCAAAGAAACAGATG  984

seq1  GAAGAGTATGTGGGGAGGGCAGTGTAAGCAGAATGAGCTATGGCAATCCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTATGTGGGGAGGGCAGTGTAAGCAGAATGAGCTATGGCAATCCT  1034

seq1  GTGACCTCTGAGAGGTGAGGCTGGCAGCCTCCTGCCTCTGTTTCAGGCCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTCTGAGAGGTGAGGCTGGCAGCCTCCTGCCTCTGTTTCAGGCCA  1084

seq1  AGCAAGATGCCAGTGAGTATCAAATGGAGAGTCCCTGACCAGTCACCCTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGATGCCAGTGAGTATCAAATGGAGAGTCCCTGACCAGTCACCCTT  1134

seq1  AACTGAGAATTC  1159
      ||||||||||||
seq2  AACTGAGAATTC  1146