BAC Information

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BAC

Clone NameB6Ng01-145M20
Chromosome17 (Build37)
Map Location 20,106,771 - 20,263,192
singlet/doubletdoublet
Overlap geneEG627664, V2r7, LOC100041856, EG545190, Fpr-rs7
Upstream geneEG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534
Downstream geneFpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145M20.bB6Ng01-145M20.g
ACCDH943110DH943111
length620993
definitionDH943110|Mus musculus domesticus DNA, BAC clone: B6Ng01-145M20, 5' end.DH943111|Mus musculus domesticus DNA, BAC clone: B6Ng01-145M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,262,573 - 20,263,192)(20,106,771 - 20,107,729)
sequence
gaattctttgtgttggaacattttacacgtgtgtgaattgttctacactc
tgctatattaacgaatgtttgcattagagatggttaatggaaacaaagtg
gtactcgttaattaaatacttttggtaattatggtgttaattatatatta
atgtctttgattttgaaattatttttagggagggctgatttccttttttt
attagatattttctttatttacatttcaaatgctatcctgaaagttccct
ataccctccccctgccctgctcccctacccacccactcccacttcttggc
cctggcattcccctgtactggggcatataaagtttgcaagaccaagggac
ctctcttcccaatgatggccgactaggacatcttctgttacatgtgcagc
tagagacatgagctctggggatactggttagttcatattgttgtgatttt
tgaaattataatacaaacatcttttaaaatttcactttcataactgcaaa
ccttctgacattacccaagtgttgtctttccatgtcatatctctatttcc
attgatatcacattcttgtgtatgtatgtgatatatatatgtatatatat
atgtgtgtatatatgtatat
gaattccacggtccaggttaattgactgtttatcttcctattgatttcct
ttcccattagaaacttaaatccttcctcttattattccataagagttcac
aagctccatcaatagtttgtctgtgggtgtctacatcagtatgagaccac
tgctgtttgaagcctttcagaggacaaccatgctgaaatactatctgtat
ttataataatacctaattaattgtgtgaaggattagttcttgcccatggg
atgggtctcaatttgatctggttattgtttggccaattctcaagactgtg
ttccatttactatcccttcatttcttgtaaacaggataaattttggatcg
caatttaggtgagtatgtaggtgtccctatcagtccaattggttaatcat
ctacctacaggaggcagtaactccaggttccacattctcaatactgtgta
tcacttttaaggacacccacattcattctttggtgtttcccatatcctaa
gacttggtttcttcctgcagaggccctctacctccatatcccaattaatt
ttctcagcatcttttgggggaaaatgcactaatgcacacacacacacaca
aaacaaagcaatcttgatcaataaaagaacactgttttgcaaactttgtg
aacctgatgttaagctgcactacagagcaagagtgatagaaagtacttct
atttgtacagaaacaaaagcaacaaaacagttacattaaatcttacagaa
atttaacggaggaaagtcgtgaatgcattggagcaggaaacaattttctg
aagagaacaccaatgactcagctctaagaaaataattaatgaatgggata
ccatgaaatttaaagctaaggtaagcaaagacactgtcataggacaacat
agactacagatgtgaagagcattgccacactatcttctgagagtgagatt
atatccaaatataagactaaaagtatactctacaatgcaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_20262573_20263192
seq2: B6Ng01-145M20.b_47_666 (reverse)

seq1  ATATACATATATACACACATATATATATACATATATATATCACATACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATATATACACACATATATATATACATATATATATCACATACATA  50

seq1  CACAAGAATGTGATATCAATGGAAATAGAGATATGACATGGAAAGACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAATGTGATATCAATGGAAATAGAGATATGACATGGAAAGACAAC  100

seq1  ACTTGGGTAATGTCAGAAGGTTTGCAGTTATGAAAGTGAAATTTTAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGTAATGTCAGAAGGTTTGCAGTTATGAAAGTGAAATTTTAAAAG  150

seq1  ATGTTTGTATTATAATTTCAAAAATCACAACAATATGAACTAACCAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTATTATAATTTCAAAAATCACAACAATATGAACTAACCAGTAT  200

seq1  CCCCAGAGCTCATGTCTCTAGCTGCACATGTAACAGAAGATGTCCTAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAGCTCATGTCTCTAGCTGCACATGTAACAGAAGATGTCCTAGTC  250

seq1  GGCCATCATTGGGAAGAGAGGTCCCTTGGTCTTGCAAACTTTATATGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCATTGGGAAGAGAGGTCCCTTGGTCTTGCAAACTTTATATGCCC  300

seq1  CAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGGTGGGTAGGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGGTGGGTAGGGGA  350

seq1  GCAGGGCAGGGGGAGGGTATAGGGAACTTTCAGGATAGCATTTGAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCAGGGGGAGGGTATAGGGAACTTTCAGGATAGCATTTGAAATGT  400

seq1  AAATAAAGAAAATATCTAATAAAAAAAGGAAATCAGCCCTCCCTAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGAAAATATCTAATAAAAAAAGGAAATCAGCCCTCCCTAAAAAT  450

seq1  AATTTCAAAATCAAAGACATTAATATATAATTAACACCATAATTACCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAAATCAAAGACATTAATATATAATTAACACCATAATTACCAAA  500

seq1  AGTATTTAATTAACGAGTACCACTTTGTTTCCATTAACCATCTCTAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTAATTAACGAGTACCACTTTGTTTCCATTAACCATCTCTAATGC  550

seq1  AAACATTCGTTAATATAGCAGAGTGTAGAACAATTCACACACGTGTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTCGTTAATATAGCAGAGTGTAGAACAATTCACACACGTGTAAAA  600

seq1  TGTTCCAACACAAAGAATTC  620
      ||||||||||||||||||||
seq2  TGTTCCAACACAAAGAATTC  620

seq1: chr17_20106771_20107729
seq2: B6Ng01-145M20.g_121_1059

seq1  CATTAGAAACTTAAATCCTTCCTCTTATTATTCCATAAGAGTTCACAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAAACTTAAATCCTTCCTCTTATTATTCCATAAGAGTTCACAAGC  50

seq1  TCCATCAATAGTTTGTCTGTGGGTGTCTACATCAGTATGAGACCACTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAATAGTTTGTCTGTGGGTGTCTACATCAGTATGAGACCACTGCT  100

seq1  GTTTGAAGCCTTTCAGAGGACAACCATGCTGAAATACTATCTGTATTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAGCCTTTCAGAGGACAACCATGCTGAAATACTATCTGTATTTAT  150

seq1  AATAATACCTAATTAATTGTGTGAAGGATTAGTTCTTGCCCATGGGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATACCTAATTAATTGTGTGAAGGATTAGTTCTTGCCCATGGGATGG  200

seq1  GTCTCAATTTGATCTGGTTATTGTTTGGCCAATTCTCAAGACTGTGTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAATTTGATCTGGTTATTGTTTGGCCAATTCTCAAGACTGTGTTCC  250

seq1  ATTTACTATCCCTTCATTTCTTGTAAACAGGATAAATTTTGGATCGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTATCCCTTCATTTCTTGTAAACAGGATAAATTTTGGATCGCAAT  300

seq1  TTAGGTGAGTATGTAGGTGTCCCTATCAGTCCAATTGGTTAATCATCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGAGTATGTAGGTGTCCCTATCAGTCCAATTGGTTAATCATCTAC  350

seq1  CTACAGGAGGCAGTAACTCCAGGTTCCACATTCTCAATACTGTGTATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGAGGCAGTAACTCCAGGTTCCACATTCTCAATACTGTGTATCAC  400

seq1  TTTTAAGGACACCCACATTCATTCTTTGGTGTTTCCCATATCCTAAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGACACCCACATTCATTCTTTGGTGTTTCCCATATCCTAAGACT  450

seq1  TGGTTTCTTCCTGCAGAGGCCCTCTACCTCCATATCCCAATTAATTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTTCCTGCAGAGGCCCTCTACCTCCATATCCCAATTAATTTTCT  500

seq1  CAGCATCTTTTGGGGGAAAATGCACTAATGCACACACACACACACAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTTTTGGGGGAAAATGCACTAATGCACACACACACACACAAAAC  550

seq1  AAAGCAATCTTGATCAATAAAAGAACACTGTTTTGCAAACTTTGTGAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATCTTGATCAATAAAAGAACACTGTTTTGCAAACTTTGTGAACC  600

seq1  TGATGTTAAGCTGCACTACAGAGCAAGAGTGATAGAAAGTACTTCTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTAAGCTGCACTACAGAGCAAGAGTGATAGAAAGTACTTCTATTT  650

seq1  GTACAGAAACAAAAGCAACAAAACAGTTACATTAAATCTTACAGAAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAAACAAAAGCAACAAAACAGTTACATTAAATCTTACAGAAATTT  700

seq1  AAGGGAGGAAAGTCGTGAATGCATTGGAGCAGGAAACAATTTTCTGAAGA  750
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGAGGAAAGTCGTGAATGCATTGGAGCAGGAAACAATTTTCTGAAGA  750

seq1  GAACACCAATGACTCAGGCTCTAAGAAAATAATTAATGAATGGGATACCA  800
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAACACCAATGACTCA-GCTCTAAGAAAATAATTAATGAATGGGATACCA  799

seq1  TGAAATTTTAAAGCTAAGGTAAGGCAAAGGACACTGTCAATAGGACAAAA  850
      ||||| |||||||||||||||| ||||| ||||||||| |||||||  ||
seq2  TGAAA-TTTAAAGCTAAGGTAA-GCAAA-GACACTGTC-ATAGGAC--AA  843

seq1  CATAAGACTACAGATTGTGAAGGAGCATTTGCCAACACTATC-TCTGAGA  899
      ||| |||||||||| |||||| ||||| ||||| |||||||| |||||||
seq2  CAT-AGACTACAGA-TGTGAA-GAGCA-TTGCC-ACACTATCTTCTGAGA  888

seq1  GTGAGATTATATCCAAAAATTATAAAGAACTTAAAAAGTTATACTCCTAC  949
      |||||||||||||||||   |||||   |||  ||||| |||||| ||||
seq2  GTGAGATTATATCCAAA---TATAA--GACT--AAAAG-TATACT-CTAC  929

seq1  AATGCAAATA  959
      ||||||||||
seq2  AATGCAAATA  939