BAC Information

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BAC

Clone NameB6Ng01-146A03
Chromosome17 (Build37)
Map Location 80,621,349 - 80,740,644
singlet/doubletdoublet
Overlap geneGemin6, Dhx57, Morn2
Upstream geneLOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik
Downstream geneSos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146A03.bB6Ng01-146A03.g
ACCDH943260DH943261
length1,160744
definitionDH943260|Mus musculus domesticus DNA, BAC clone: B6Ng01-146A03, 5' end.DH943261|Mus musculus domesticus DNA, BAC clone: B6Ng01-146A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,739,470 - 80,740,644)(80,621,349 - 80,621,928)
sequence
gaattcttagaataacttcagaagtcaccaaatcctgtctgaaagcatta
taaagacagcagcgagtggctgagaagcccacacccatactttggggttc
accatactttcttcctgggcatgcctctcttaacccttgtgtttaaaatc
atatcgccatctctgtcattgacctccaactctgccccacactggctttt
cctgaaattctttcccacagttcggccaaggacccagctttgcctgaaga
ggtctctgataacttcaggtgtctgaggaagatggctggagttgcgcctc
tgtgtcttcgccactgatattttcattacacagaaaactgggcaataaaa
ggtgagacttggcctaggtctccttccttcacctgccatggaaaccacag
gtccttctgtgctataaggcaggaatcaggggcttagtcaaattgcagag
actctggtgggttttgtttcgctcctgcccctcatcttttgcttctccga
gattcttgtttaggttgggctttggttttgagacagagcctcactctgct
gctggcacttcttagatctgttttattgaccatgcgatgcaagctggctt
tgaacttctgatcttcttgcccttgccttccccagctttctgggtgctgt
gccactatccaccacatccagcttggtcttttcatacggaacctttcttt
tcttttcttttcttttcttttcttttcttttcttttcttttcttttctct
tctttccctttctttctctctttctttctttctttctttccttctttctt
tctttctttctttctttctttctttctttctttccttctttctttctttc
tttttttttttttccaagacagggtttctctgtgtagtcctggctgtcct
gcaactcgaactcagaaatccacctgcttctgcctcccaagtgctgggat
taaagtgtgcgccaccaccgcccggctatactgaactttcaagaaaacac
tttggagttgtttttgattaaagcaaacaatgagatctttcttttttcca
acgcttatttcccacagccggaatgactgcacaaactttcttgctttcaa
acctcctcttgtttcagtactagttaatgacataggtctactggtatgct
gggagcccaa
gaattcactatacagacaggactggcctctgcttccatactgctgagatt
aaaggtgtgcaccaccacatccaacctaaaacacatttgtgtgtgtgtgt
gtctgtgtgtgtttgtgtacttgtggaagtcacagaacttgcaggagttg
gttcttcccttccacaaatgtcccagagatcaaacttgccttatcaggaa
cagtggcaaattcctgtaaccactgagcagtctcaccagactacaggggc
ttatctggcttctgatgttggtgctgggtatatgaacgcaggctctcatg
cttccagtgcaagcaaacactttactaacagccatcaccccagcccaatg
tattcattcatatatataatatatatatatacatatatatatatacacac
acatatatgtgtgtgtgaatacatacatacatacatatatatatatatat
gttgtatgtgtatgggtgttttgcttgcatgtatgtctgagcaccatatg
agcaccactatggtggctggtgcccctgctggccaaatgagggtgtcatc
tcctgggagtttgacattttttgtttgcagtcatgtgggaaatcccggct
ctctaaagaacagccagtgctcctagccactgaaccatctcttttccagc
ccccttaatgtattcttttttctagatcggattttttttgtttcctctgt
gtgtgtgttgggcaaccctcaggtgtcattttttatgaaataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_80739470_80740644
seq2: B6Ng01-146A03.b_47_1206 (reverse)

seq1  TTGGCGCTCCCAGCATAAACCCCAGCTTAGACATA-GTCATTAACTAGTA  49
      |||| ||||||||||||    ||||  ||||| || ||||||||||||||
seq2  TTGG-GCTCCCAGCATA----CCAG--TAGACCTATGTCATTAACTAGTA  43

seq1  CTTGAACACACGAGTGATGGTCTGGAAGCAAAGAAGTCTGATGCAGTCAT  99
      | |||| ||| ||| || ||| || ||||||  |||| || |||||||||
seq2  C-TGAA-ACAAGAG-GA-GGTTTGAAAGCAAGAAAGTTTG-TGCAGTCAT  88

seq1  TCCGGCTGGTGGGAGAT-AGCGTTGGGAAAAAGAAAGATCTTCATTGTTT  148
      ||||||| |||||| || |||||||| ||||||||||||| |||||||||
seq2  TCCGGCT-GTGGGAAATAAGCGTTGGAAAAAAGAAAGATC-TCATTGTTT  136

seq1  GCTCTAATCAAAACCAACTCCAAAGTGTTTTCTTGAAAGGTTCAGTATAG  198
      ||| ||||||||| |||||||||||||||||||||||| |||||||||| 
seq2  GCTTTAATCAAAAACAACTCCAAAGTGTTTTCTTGAAA-GTTCAGTATA-  184

seq1  GCCGGGCGGTGGTGGCGCACACCTTTAATCCCAGCACTTGGGAGGCAGAG  248
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  GCCGGGCGGTGGTGGCGCACA-CTTTAATCCCAGCACTTGGGAGGCAGAA  233

seq1  GCAGGTGGATTTTTGAGTTCGAGTTGCAGGACAGCCAGGACTACACAGAG  298
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGGATTTCTGAGTTCGAGTTGCAGGACAGCCAGGACTACACAGAG  283

seq1  AAACCCTGTCTTGGAAAAAAAAAAAAAGAAAGAAAGAAAGAAGGAAAGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGTCTTGGAAAAAAAAAAAAAGAAAGAAAGAAAGAAGGAAAGAA  333

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGAAAGAAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGAAAGAAAG  383

seq1  AAAGAAAGAGAGAAAGAAAGGGAAAGAAGAGAAAAGAAAAGAAAAGAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAGAGAAAGAAAGGGAAAGAAGAGAAAAGAAAAGAAAAGAAAA  433

seq1  GAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAGGTTCCGTATGAAAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAGGTTCCGTATGAAAAG  483

seq1  ACCAAGCTGGATGTGGTGGATAGTGGCACAGCACCCAGAAAGCTGGGGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCTGGATGTGGTGGATAGTGGCACAGCACCCAGAAAGCTGGGGAA  533

seq1  GGCAAGGGCAAGAAGATCAGAAGTTCAAAGCCAGCTTGCATCGCATGGTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGGCAAGAAGATCAGAAGTTCAAAGCCAGCTTGCATCGCATGGTC  583

seq1  AATAAAACAGATCTAAGAAGTGCCAGCAGCAGAGTGAGGCTCTGTCTCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACAGATCTAAGAAGTGCCAGCAGCAGAGTGAGGCTCTGTCTCAA  633

seq1  AACCAAAGCCCAACCTAAACAAGAATCTCGGAGAAGCAAAAGATGAGGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGCCCAACCTAAACAAGAATCTCGGAGAAGCAAAAGATGAGGGG  683

seq1  CAGGAGCGAAACAAAACCCACCAGAGTCTCTGCAATTTGACTAAGCCCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCGAAACAAAACCCACCAGAGTCTCTGCAATTTGACTAAGCCCCT  733

seq1  GATTCCTGCCTTATAGCACAGAAGGACCTGTGGTTTCCATGGCAGGTGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTGCCTTATAGCACAGAAGGACCTGTGGTTTCCATGGCAGGTGAA  783

seq1  GGAAGGAGACCTAGGCCAAGTCTCACCTTTTATTGCCCAGTTTTCTGTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAGACCTAGGCCAAGTCTCACCTTTTATTGCCCAGTTTTCTGTGT  833

seq1  AATGAAAATATCAGTGGCGAAGACACAGAGGCGCAACTCCAGCCATCTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAATATCAGTGGCGAAGACACAGAGGCGCAACTCCAGCCATCTTC  883

seq1  CTCAGACACCTGAAGTTATCAGAGACCTCTTCAGGCAAAGCTGGGTCCTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACACCTGAAGTTATCAGAGACCTCTTCAGGCAAAGCTGGGTCCTT  933

seq1  GGCCGAACTGTGGGAAAGAATTTCAGGAAAAGCCAGTGTGGGGCAGAGTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGAACTGTGGGAAAGAATTTCAGGAAAAGCCAGTGTGGGGCAGAGTT  983

seq1  GGAGGTCAATGACAGAGATGGCGATATGATTTTAAACACAAGGGTTAAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCAATGACAGAGATGGCGATATGATTTTAAACACAAGGGTTAAGA  1033

seq1  GAGGCATGCCCAGGAAGAAAGTATGGTGAACCCCAAAGTATGGGTGTGGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATGCCCAGGAAGAAAGTATGGTGAACCCCAAAGTATGGGTGTGGG  1083

seq1  CTTCTCAGCCACTCGCTGCTGTCTTTATAATGCTTTCAGACAGGATTTGG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGCCACTCGCTGCTGTCTTTATAATGCTTTCAGACAGGATTTGG  1133

seq1  TGACTTCTGAAGTTATTCTAAGAATTC  1175
      |||||||||||||||||||||||||||
seq2  TGACTTCTGAAGTTATTCTAAGAATTC  1160

seq1: chr17_80621349_80621928
seq2: B6Ng01-146A03.g_223_808

seq1  CTTCCACAAATGTCCCAGAGATCAAACTTGCCTTATCAGGAACAGTGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACAAATGTCCCAGAGATCAAACTTGCCTTATCAGGAACAGTGGCA  50

seq1  AATTCCTGTAACCACTGAGCAGTCTCACCAGACTACAGGGGCTTATCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTGTAACCACTGAGCAGTCTCACCAGACTACAGGGGCTTATCTGG  100

seq1  CTTCTGATGTTGGTGCTGGGTATATGAACGCAGGCTCTCATGCTTCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGATGTTGGTGCTGGGTATATGAACGCAGGCTCTCATGCTTCCAGT  150

seq1  GCAAGCAAACACTTTACTAACAGCCATCACCCCAGCCCAATGTATTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAAACACTTTACTAACAGCCATCACCCCAGCCCAATGTATTCATT  200

seq1  CATATATATAATATATATATATACATATATATATATACACACACATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATAATATATATATATACATATATATATATACACACACATATAT  250

seq1  GTGTGTGTGAATACATACATACATACATATATATATATATATGTTGTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGAATACATACATACATACATATATATATATATATGTTGTATG  300

seq1  TGTATGGGTGTTTTGCTTGCATGTATGTCTGAGCACCATATGAGCACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGGTGTTTTGCTTGCATGTATGTCTGAGCACCATATGAGCACCAC  350

seq1  TATGGTGGCTGGTGCCCCTGCTGGCCAAATGAGGGTGTCATCTCCTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGGCTGGTGCCCCTGCTGGCCAAATGAGGGTGTCATCTCCTGGGA  400

seq1  GTTTGACA-TTTTTGTATGCAGTCATGTGGGAAATCCCGGCTCTCTAAAG  449
      |||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  GTTTGACATTTTTTGTTTGCAGTCATGTGGGAAATCCCGGCTCTCTAAAG  450

seq1  AACAGCCAGTGCTCCTAGCCACTGAACCATCTC-TTTCCAG-CCCCTTAA  497
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  AACAGCCAGTGCTCCTAGCCACTGAACCATCTCTTTTCCAGCCCCCTTAA  500

seq1  TGTATTC-TTTTTCTAGATCGGA-TTTTTTTGTTTCCTTCTGTGTGTGTG  545
      ||||||| ||||||||||||||| ||||||||||||| ||||||||||||
seq2  TGTATTCTTTTTTCTAGATCGGATTTTTTTTGTTTCC-TCTGTGTGTGTG  549

seq1  TAGGGCAA-CCTCAGGTGTCA-TTTTCAGGAAATACA  580
      | |||||| |||||||||||| |||| | ||||||||
seq2  TTGGGCAACCCTCAGGTGTCATTTTTTATGAAATACA  586