BAC Information

Click to search

BAC

Clone NameB6Ng01-146L08
Chromosome17 (Build37)
Map Location 19,383,171 - 19,384,281
singlet/doubletsinglet
Overlap geneLOC665344
Upstream geneEG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070, Vmn2r-ps115, Vmn2r-ps117, LOC100042183, EG627367, EG224552
Downstream geneLOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146L08.bB6Ng01-146L08.g
ACCDH943777DH943778
length1,2441,096
definitionDH943777|Mus musculus domesticus DNA, BAC clone: B6Ng01-146L08, 5' end.DH943778|Mus musculus domesticus DNA, BAC clone: B6Ng01-146L08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccactattaattttggaattgtaggaatggttcaataaaaaga
aatccatcaatttaatccactatacaaacaaactcaaagacaaaaccacc
tgatcatctcattagaatctgagaaagtatttgacaatattcaacaccca
tttatcataaagttcttggaaagatcaggagttcaaggcccatacctaaa
catattaaaagcaatatacagcaaaccagtagccaacatcaaaccaaatg
gagataaacatgaagcaatcccactaaaatcaggaactagacaggcttcc
cactctctccctacctattcgatatagtacttgaagtccaagacagaaca
ttagacaacaaaaggagatcaaagggatacaaattggaaaggaagctctt
tgcagatgatatgatagcgtatataatagtgatcacaaaaattccaccag
ataactcctaaacctgataaatttcagtgaagtagcttgatataaaatta
acagaaaaaaaaatcactgacctttctctacacaaaggataaacaggctg
agaaagaaattaggaaaacaactcatttgacaatagtcacaaataatata
aaatacctttttgtgaatctaactaacgaagtgaaagatctgtatgataa
aggcttcaagttcctgaagaaagaaatccaagaagatctcagaagatgaa
aagttctcccatgctcatggattgtcaggattaatatagtaaaattgact
acttcgccaaaagcaatctaaagattcaatgcaatccccataaaaacttt
aacccaattcttcacagttacaaagggtaatttgccaattcatctggaat
aagaaaaaacctagggtagcaaaaattattcccaacactataagaatctc
tggtgaaatcaccatccctaacctcaagctgtattccagagaaattgtat
aaaactgcatggtactggtacagtgacagagaggtagatgaattgaatag
aattaaagaaaagaaattattcacacacctatggtcactggatctttgaa
aaagtggtaaaccatcagtggaaaaagactatattacatcaatggtactg
gtcactggtggtagcatgtagcgaagagaattgatcattcttatctactt
gtaaaggctcaggtctatggatcaggtactccaataaacctggacctgga
acctttgaggaaaagtgggaagaccttggagaatatggacacag
gaattctatgagaccttcaaagaagacctaattccaatactattcaaact
attgaacaaatgagaaaaagaaggaacactaaaataatcattctattaag
ccataattacacttatacctaaaccgcaaaaagaagcaacaatgaaaaag
aacttcacaccagtgtctgaatctgattttcactataagaagtgaattga
aaagaaaactgtaatatatttatacaatgaaaatgttgttaaagaattaa
aaattaattcatgaaacgtataatcaggactcagaattccatcctaaaaa
tcacagtgtttcctgaagttcttgccagcaacaaagacccagttaattac
cctgctatcttctagatgtctcgttgaactctaccttaaaacctgggccc
catgatatggcccactattttttcacatgacctcccagaaggaacactgg
caaccaaaacctcagaggtaatgtaggcttaatcagaacaaagaaaacaa
actacaaacaaaatccagtggagacacctgaagattcactgaaccgcaaa
ccctgagatatgaagtccagaaacaaaaagaagaaaaagaatcaatgaag
ataaacattaccatagcaaactggaaacaacctagatgaccttaactgaa
gaatagataaagggtaattcactgacacaatggaatactacacaggtact
aaaaatatcatgaaatgtgcatgtacatcagtagcactttgagaatttca
ttccgagtgaggtaacacagacacaaaatgacatgattggaatgtaatca
ctaataagtggatagtgtccataaaacacaggataaccatgctacacttt
gaagattcaaataagtaaagaggaatgaatgtctaatgtttaagccaaat
ttctcttgtgtagaagaatgctggtatgaggaatggagcagacttaggag
gaatggcatgcataagcagctcaactagagcctatccatggaaaatacta
atcactgcaactaatattagacttctcttgtgctgcagataaagcatagc
atggctctcctctgagtgaccttaccagcagctgacaaagatagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_19383171_19384281
seq2: B6Ng01-146L08.g_69_1164

seq1  GAATTCTATGAGACCTTCAAAGAAGACCTAATTCCAATACTATTCAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGAGACCTTCAAAGAAGACCTAATTCCAATACTATTCAAACT  50

seq1  ATTGAACAAATGAGAAAAAGAAGGAACACTAAAATAATCATTCTATTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACAAATGAGAAAAAGAAGGAACACTAAAATAATCATTCTATTAAG  100

seq1  CCATAATTACACTTATACCTAAACCGCAAAAAGAAGCAACAATGAAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATTACACTTATACCTAAACCGCAAAAAGAAGCAACAATGAAAAAG  150

seq1  AACTTCACACCAGTGTCTGAATCTGATTTTCACTATAAGAAGTGAATTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCACACCAGTGTCTGAATCTGATTTTCACTATAAGAAGTGAATTGA  200

seq1  AAAGAAAACTGTAATATATTTATACAATGAAAATGTTGTTAAAGAATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAACTGTAATATATTTATACAATGAAAATGTTGTTAAAGAATTAA  250

seq1  AAATTAATTCATGAAACGTATAATCAGGACTCAGAATTCCATCCTAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTCATGAAACGTATAATCAGGACTCAGAATTCCATCCTAAAAA  300

seq1  TCACAGTGTTTCCTGAAGTTCTTGCCAGCAACAAAGACCCAGTTAATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTGTTTCCTGAAGTTCTTGCCAGCAACAAAGACCCAGTTAATTAC  350

seq1  CCTGCTATCTTCTAGATGTCTCGTTGAACTCTACCTTAAAACCTGGGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTATCTTCTAGATGTCTCGTTGAACTCTACCTTAAAACCTGGGCCC  400

seq1  CATGATATGGCCCACTATTTTTTCACATGACCTCCCAGAAGGAACACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATATGGCCCACTATTTTTTCACATGACCTCCCAGAAGGAACACTGG  450

seq1  CAACCAAAACCTCAGAGGTAATGTAGGCTTAATCAGAACAAAGAAAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAAACCTCAGAGGTAATGTAGGCTTAATCAGAACAAAGAAAACAA  500

seq1  ACTACAAACAAAATCCAGTGGAGACACCTGAAGATTCACTGAACCGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAACAAAATCCAGTGGAGACACCTGAAGATTCACTGAACCGCAAA  550

seq1  CCCTGAGATATGAAGTCCAGAAACAAAAAGAAGAAAAAGAATCAATGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGATATGAAGTCCAGAAACAAAAAGAAGAAAAAGAATCAATGAAG  600

seq1  ATAAACATTACCATAGCAAACTGGAAACAACCTAGATGACCTTAACTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACATTACCATAGCAAACTGGAAACAACCTAGATGACCTTAACTGAA  650

seq1  GAATAGATAAAGGGTAATTCACTGACACAATGGAATACTACACAGGTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGATAAAGGGTAATTCACTGACACAATGGAATACTACACAGGTACT  700

seq1  AAAAATATCATGAAATGTGCATGTACATCAGTAGCACTTTGAGAATTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATCATGAAATGTGCATGTACATCAGTAGCACTTTGAGAATTTCA  750

seq1  TTCCGAGTGAGGTAACACAGACACAAAATGACATGATTGGAATGTAATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGAGTGAGGTAACACAGACACAAAATGACATGATTGGAATGTAATCA  800

seq1  CTAATAAGTGGATAGTGTCCATAAAACACAGGATAACCATGCTACACTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAGTGGATAGTGTCCATAAAACACAGGATAACCATGCTACACTTT  850

seq1  GAAGATTCAAATAAGGTAAAGAGGAATGAATGTCTAATGTTTAAGCCAAA  900
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  GAAGATTCAAATAA-GTAAAGAGGAATGAATGTCTAATGTTTAAGCC-AA  898

seq1  ATTTCTCTTGTGTAGAAGAAATGCTGGTATGAGGAATGGAGCAGAACTTA  950
      |||||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  ATTTCTCTTGTGTAGAAG-AATGCTGGTATGAGGAATGGAGCAG-ACTTA  946

seq1  GGGAGGGAATGGGCATGCAATAAGCAGCTCAACTAGAGCCTTATCCCATG  1000
      ||   ||||| ||||||| ||||||||||||||||||||| ||| |||| 
seq2  GG--AGGAAT-GGCATGC-ATAAGCAGCTCAACTAGAGCC-TAT-CCAT-  989

seq1  GGAAAATACTAATCACTGCAACTAATAATTAGAC-TCTCTTGTGCTTGCA  1049
      |||||||||||||||||||||||||| ||||||| |||||||||| ||||
seq2  GGAAAATACTAATCACTGCAACTAAT-ATTAGACTTCTCTTGTGC-TGCA  1037

seq1  GATAAAAGCATAGCAATGGCTCTCCTCTGAGTGACTCTACCCAGCAGCTG  1099
      ||| |||||||||| |||||||||||||||||||| ||  ||||||||||
seq2  GAT-AAAGCATAGC-ATGGCTCTCCTCTGAGTGAC-CTTACCAGCAGCTG  1084

seq1  ACACAGATAGAT  1111
      ||| ||||||||
seq2  ACAAAGATAGAT  1096