BAC Information

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BAC

Clone NameB6Ng01-146M20
Chromosome17 (Build37)
Map Location 58,494,431 - 58,494,946
singlet/doubletsinglet
Overlap geneCntnap5c
Upstream geneEmr1, EG224916, LOC674419
Downstream geneLOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146M20.bB6Ng01-146M20.g
ACCDH943849DH943850
length9261,171
definitionDH943849|Mus musculus domesticus DNA, BAC clone: B6Ng01-146M20, 5' end.DH943850|Mus musculus domesticus DNA, BAC clone: B6Ng01-146M20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacttccattaagaggaaaacattcctcctatttgtttaagattt
atgttatttgaaggcaacagtaattaggattcaatgcagtaactagtttt
taaagaagtcccattgaggcagttttatgaatttcaaattatgttttacg
atccaatttcttttaactatagacaatctttatgacaaatcttgaaactt
taaattaatggcagtaatgcctcttataaatgtatttgaatagtcttttg
actgtttccacagatagtgatggaatgagggaatactgagtgagcatcag
aggcttcgaacctctgtggaattcttctgagaggctgtatttccctctca
tgagctacatctcagcatcctatacatagtggtctcttagtagcctatct
tattagggttcatattgctgtaatgaaacacaaagaccaaaagaaagttg
agaaggaaagactttatttgggttacatttctaaatcttagtccattgct
gaaggaagccaaaacaggaattcaaacagggtaggagcctaaaatgcaga
ggccttagaggaatgctgcttactggcttagtccccatggcttgctcagt
ctgtattcttataaagtcaaggagaagtaacccagggatggtaccaccta
caatggattttggccctccctcatccatcactaatgaagaaaattgctaa
actatcttgcctacaacctgatcttataaggcattaacttaatttgaggt
tctcccctcccagatgaatttagcttgtgccaagttgacatgaaaactat
tgcagcacaatttgaccccttgtcaactttgacacacaaatgcagcatca
ttaagccacaacattatttctccttcatccacatgaactcacattttgtt
tatttggtttgttgtttgtttatgga
gaattctcacctgaggaataccgaatggcagagaagcccctgaaaaaatg
ttcaacctccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tgcacctcacaccagtcagaatggctaagatcaaaaattcagttgacagc
agatgctggcatggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccatctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcaaccttatttataatagccagaagctggaaacaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatatccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccttggaaggaggtacagagacaaaagtttggagctgagata
aaaagatggaccatgtagagacttccatatccggggatccatcccataat
cagattccaatactgacaccattgcatacactagcaagattatgctgaaa
ggaccctgatatagctgtctcttgtcagagtatgcctggggcctagcaaa
catagaagtggatgctcacagtcggctattggatggatcaacatggtccc
caatgaaagaagctagagaagtacccaggagctaaagtgatctgcaaccc
tattagtggaacaacattatgactaccagtacccttgagcctctgactct
agctgcatagtatcaaaaaatgctatagtcattcactgaaaagaagccat
tgacttgcaactttaatgcccagtacatgggaatccatggccataaaggg
gagatggttggtatgacggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_58494431_58494946
seq2: B6Ng01-146M20.b_46_561 (reverse)

seq1  TGTTTTGGCTTCCTTCAGCAATGGACTAAGATTTAGAAATGTAACCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGCTTCCTTCAGCAATGGACTAAGATTTAGAAATGTAACCCAAA  50

seq1  TAAAGTCTTTCCTTCTCAACTTTCTTTTGGTCTTTGTGTTTCATTACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCTTTCCTTCTCAACTTTCTTTTGGTCTTTGTGTTTCATTACAGC  100

seq1  AATATGAACCCTAATAAGATAGGCTACTAAGAGACCACTATGTATAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAACCCTAATAAGATAGGCTACTAAGAGACCACTATGTATAGGAT  150

seq1  GCTGAGATGTAGCTCATGAGAGGGAAATACAGCCTCTCAGAAGAATTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGATGTAGCTCATGAGAGGGAAATACAGCCTCTCAGAAGAATTCCA  200

seq1  CAGAGGTTCGAAGCCTCTGATGCTCACTCAGTATTCCCTCATTCCATCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTTCGAAGCCTCTGATGCTCACTCAGTATTCCCTCATTCCATCAC  250

seq1  TATCTGTGGAAACAGTCAAAAGACTATTCAAATACATTTATAAGAGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGGAAACAGTCAAAAGACTATTCAAATACATTTATAAGAGGCAT  300

seq1  TACTGCCATTAATTTAAAGTTTCAAGATTTGTCATAAAGATTGTCTATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCATTAATTTAAAGTTTCAAGATTTGTCATAAAGATTGTCTATAG  350

seq1  TTAAAAGAAATTGGATCGTAAAACATAATTTGAAATTCATAAAACTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAAATTGGATCGTAAAACATAATTTGAAATTCATAAAACTGCCT  400

seq1  CAATGGGACTTCTTTAAAAACTAGTTACTGCATTGAATCCTAATTACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGACTTCTTTAAAAACTAGTTACTGCATTGAATCCTAATTACTGT  450

seq1  TGCCTTCAAATAACATAAATCTTAAACAAATAGGAGGAATGTTTTCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCAAATAACATAAATCTTAAACAAATAGGAGGAATGTTTTCCTCT  500

seq1  TAATGGAAGTGAATTC  516
      ||||||||||||||||
seq2  TAATGGAAGTGAATTC  516