BAC Information

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BAC

Clone NameB6Ng01-147M06
Chromosome17 (Build37)
Map Location 41,164,654 - 41,165,759
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut
Downstream geneLdha-ps3, LOC627577
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147M06.bB6Ng01-147M06.g
ACCDH944554DH944555
length1,2701,090
definitionDH944554|Mus musculus domesticus DNA, BAC clone: B6Ng01-147M06, 5' end.DH944555|Mus musculus domesticus DNA, BAC clone: B6Ng01-147M06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaagctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaag
gccttttccctaaattgtttttgtcaacagaatattgacaatagcacgta
aaatagatattttatcacagcacctggcaatgaaactacaggtaagtaga
gaagttggcagaaaagtgtcagtaaatttgaggtatttttattttgctta
aaaatgacaaaactaatgttgtcattttgatagaagcaattcaacacaga
gggaaatgtgcaggaatagtttctggaattgctcaactataggataaaag
tcacggatttagatatggtcaagtgttttaactctatgacaatatagtgc
aaaatatgcaaagcagattctgttagaaagatgaaaggctacggactatc
tctagaagctttcttttagttgtttgaatgttcttgcaacataggaaaga
aggtgctcacctcagagactgggtctgtgaacaactctcagaagtttctt
gaagaagaaacagttgtaaccattacactagggaagtatgccattgttat
acacactaaatgtaaacacttgaaatgctgtgttcatgaattggagtaaa
cataaaatggatgtttatattacccagcagccttcatccacagagcaaaa
gaaaagaaaaatagagattcccatccaatcaggactatcgtattttctag
atagtataaaatgcattggaaggttaaaggtgtagagtagtaggcaatga
aataagcatggtacccgaatctgaactttatcacacctaaactgagaagt
tagaacattaaagaaggaagcactgatgaggtaagcaagtcaaaggatga
gatatttcatggaactaaagtaccgataatgccagtattcccataagtga
attgctatagtgagaaatacaaataagatagaaagataacccgggccaaa
ggtgaatacattttcaaagctgttggctttgaaatgtctgagccctatta
gtgaggcctgagggagagtgaatacaaggtcactgtaaaacaggagccac
acctgcattgataaggagctcatcctaacttttggtgaattaagaattcc
cccagagtatgttgccagaaaagaaacatgattgaagttagccatggaga
aatccggagtgaggagatcgattgattattggcatgtcacctgtgaaacg
ggagagaatgaatcgccaagagaatccttggaacctcctatcagaacact
tacccgtggggaaagtaaaa
gaattcatatgtatgctgcaaaaaaccttacacacttagacatatacact
caatgaccaaatcaaagttgtcagtaccactgtgcatttaaatggcattc
caaattttattaactcaagaatgtagccaaatatattcttacatacatac
acatgaaatgtttctaccgatgagaaaatttctttagaaaaacttttgct
atattatgatttttttttacttcaaaactattataaaacattttattata
ataacaaacagatcccattcctttccgttgctcttagctgaaatgcctaa
gggaaataattttttgaaaatttgacaagaagatatggttattttttaaa
gttaatttaaaaatataactagtgaatgatgactgtgtatccttgtccat
tgctcaagtttatcttcctatctgctttccttgtttgcctgactacctct
ttcactgagcttttcgttccttcccaagagtctgccctttatgcaaggaa
gacatgattacctctaaagttttgttagcaggtttttcaaattcaaagca
tcatctgtacaaagttgatttttcttttttagtgaggaaggtagcattga
ttggtatttgatttattgatactgaagtgtcaggttttatgacaatctca
gtctgtttaggataagccacacaaatatcaatcaaacaaaatggcaaaca
aatataaaataggtctgggttggagtgaattagttgagcttctttttttt
tttagaattaatattttttattaggtattttcctcatttacatttccaat
gctatccaaaaagtccccaatacactacccctccacacactcccctaccc
acccactcccactttttggccctggcattcccctgtactgggggatataa
agtttgcaagtccaatggcctctcttccagtgatggccgactagccatct
ttgatacatatgcagctagagtcagagctctggggtactgttagtcatat
gttgttcccatataggtgcagatccctttagctccttggtactttctcta
gctccccatggagccctgtgcgccatcaatagctgactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_41164654_41165759
seq2: B6Ng01-147M06.g_66_1155

seq1  GAATTCATATGTATGCTGCAAAAAACCTTACACACTTAGACATATACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGTATGCTGCAAAAAACCTTACACACTTAGACATATACACT  50

seq1  CAATGACCAAATCAAAGTTGTCAGTACCACTGTGCATTTAAATGGCATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACCAAATCAAAGTTGTCAGTACCACTGTGCATTTAAATGGCATTC  100

seq1  CAAATTTTATTAACTCAAGAATGTAGCCAAATATATTCTTACATACATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTATTAACTCAAGAATGTAGCCAAATATATTCTTACATACATAC  150

seq1  ACATGAAATGTTTCTACCGATGAGAAAATTTCTTTAGAAAAACTTTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAATGTTTCTACCGATGAGAAAATTTCTTTAGAAAAACTTTTGCT  200

seq1  ATATTATGATTTTTTTTTACTTCAAAACTATTATAAAACATTTTATTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATGATTTTTTTTTACTTCAAAACTATTATAAAACATTTTATTATA  250

seq1  ATAACAAACAGATCCCATTCCTTTCCGTTGCTCTTAGCTGAAATGCCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAACAGATCCCATTCCTTTCCGTTGCTCTTAGCTGAAATGCCTAA  300

seq1  GGGAAATAATTTTTTGAAAATTTGACAAGAAGATATGGTTATTTTTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATAATTTTTTGAAAATTTGACAAGAAGATATGGTTATTTTTTAAA  350

seq1  GTTAATTTAAAAATATAACTAGTGAATGATGACTGTGTATCCTTGTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTAAAAATATAACTAGTGAATGATGACTGTGTATCCTTGTCCAT  400

seq1  TGCTCAAGTTTATCTTCCTATCTGCTTTCCTTGTTTGCCTGACTACCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAGTTTATCTTCCTATCTGCTTTCCTTGTTTGCCTGACTACCTCT  450

seq1  TTCACTGAGCTTTTCGTTCCTTCCCAAGAGTCTGCCCTTTATGCAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGAGCTTTTCGTTCCTTCCCAAGAGTCTGCCCTTTATGCAAGGAA  500

seq1  GACATGATTACCTCTAAAGTTTTGTTAGCAGGTTTTTCAAATTCAAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGATTACCTCTAAAGTTTTGTTAGCAGGTTTTTCAAATTCAAAGCA  550

seq1  TCATCTGTACAAAGTTGATTTTTCTTTTTTAGTGAGGAAGGTAGCATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTACAAAGTTGATTTTTCTTTTTTAGTGAGGAAGGTAGCATTGA  600

seq1  TTGGTATTTGATTTATTGATACTGAAGTGTCAGGTTTTATGACAATCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATTTGATTTATTGATACTGAAGTGTCAGGTTTTATGACAATCTCA  650

seq1  GTCTGTTTAGGATAAGCCACACAAATATCAATCAAACAAAATGGCAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTAGGATAAGCCACACAAATATCAATCAAACAAAATGGCAAACA  700

seq1  AATATAAAATAGGTCTGGGTTGGAGTGAATTAGTTGAGCTTCTTTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAATAGGTCTGGGTTGGAGTGAATTAGTTGAGCTTCTTTTTTTT  750

seq1  TTTAGAATTAATATTTTTTATTAGGTATTTTCCTCATTTACATTTCCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATTAATATTTTTTATTAGGTATTTTCCTCATTTACATTTCCAAT  800

seq1  GCTATCCAAAAAGTCCCCAATACACTACCCCTCCACACACTCCCCTACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCCAAAAAGTCCCCAATACACTACCCCTCCACACACTCCCCTACCC  850

seq1  ACCCACTCCCACTTTTTGGCCCTGGCATTCCCCTGTACTGGGGGATATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTCCCACTTTTTGGCCCTGGCATTCCCCTGTACTGGGGGATATAA  900

seq1  AGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCA  950
      |||||||||||||||| |||||||| ||||||||||||||||||| ||||
seq2  AGTTTGCAAGTCCAAT-GGCCTCTC-TTCCAGTGATGGCCGACTA-GCCA  947

seq1  TCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCTGGGGTACTGGTTAG  1000
      || |||||||||||||||||||||||| |||||||||||||||| |||||
seq2  TC-TTTGATACATATGCAGCTAGAGTC-AGAGCTCTGGGGTACT-GTTAG  994

seq1  TTCATAATGTTGTTCCACATATAGGGTTGCAGATCCCTTTAGCTCCTTGG  1050
       |||| |||||||||| ||||||||  ||||||||||||||||||||| |
seq2  -TCAT-ATGTTGTTCC-CATATAGG--TGCAGATCCCTTTAGCTCCTT-G  1038

seq1  GTACTTTCTCTAGCTCCTCCATTGGAGGCCCTGTGCGCCATCCAATAGCT  1100
      ||||||||||||||||| ||| |||| |||||||||||||| ||||||||
seq2  GTACTTTCTCTAGCTCC-CCA-TGGA-GCCCTGTGCGCCAT-CAATAGCT  1084

seq1  GACTGT  1106
      ||||||
seq2  GACTGT  1090