BAC Information

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BAC

Clone NameB6Ng01-148O08
Chromosome17 (Build37)
Map Location 6,546,219 - 6,682,523
singlet/doubletdoublet
Overlap geneLOC100040500, LOC100040531, LOC100040525, LOC100040563, LOC100040546, LOC100040536
Upstream geneZdhhc14, 3300005D01Rik, LOC100040342, LOC100040352, Snx9, LOC666951, Synj2, Serac1, Gtf2h5, 2210038L17Rik, LOC545184, Tulp4, EG433058, Tmem181, LOC100040453, LOC100040471, Dynlt1, LOC547127, LOC100040488
Downstream geneLOC100040556, LOC100040603, LOC100040596, LOC100040631, LOC100040616, Sytl3, Vil2, LOC100040654, Rshl2b, 1700122H20Rik, Tagap1, Rnaset2b, Gm1604, Rps6ka2, LOC625031, Tcp10b, LOC100038857, LOC667055, 5830477G23Rik, LOC625102
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148O08.bB6Ng01-148O08.g
ACCDH945381DH945382
length1,1011,101
definitionDH945381|Mus musculus domesticus DNA, BAC clone: B6Ng01-148O08, 5' end.DH945382|Mus musculus domesticus DNA, BAC clone: B6Ng01-148O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,681,422 - 6,682,523)(6,546,219 - 6,547,477)
sequence
gaattctctaaagggtttcaagcacactgaccacaaactgagcctggcct
tgaatagaaatggtcactgcgatcatgttctccctgtgcatgctggtgtg
agcctactaatcctaaccactcaagagttggaggcaggagacttgtgagt
ttgaggccaccctggacctgaactacctagcaagaccctgtctcaaaaat
gcattctctttattaagcaccaaaaaggtattctagggttgggctcagtg
ggtacagttggtgccgagtttggatctctagaagccacataaagttagac
gtgataccttgagcctataatcccagcactcccgaggaagggtcaaattc
tcaggagctcagaggctggctaccctggcatacgcggtagtgaacgttaa
agaggtcctgtttcagacaaggtggaagaatggaagacagggctctaaag
acccctcagcggtgcatactgctctccagtttccggtacccatatagggc
agctcgcaactatctgtgactccagctctggatctgatgcccctggcctc
tgagggcaccagcatttgcatgcacacactccaccccagacacacacaac
aaaacataaatctttacaagacaaagggagaaggcgaagaccaataccta
agggtgtctccactgatctccatgtgtgaacacatttacacacgtgtaca
catacataaacacgcacactcccacacacaaagatattctatcattttgg
atttttgtttgcttcgtttgttttggcggtgttgttgtttgagacatgat
ttctctgtgtagtcttgactgtcctggaacttactctgtagaccgggctg
gcctcgacctcatagagatctgcttacctctgcttctgagagctgagaat
gaaaggtatgcggctccactgtccaacaattttctacctttttactgtct
gctttgtcttcagacttcaaggaatattaaaaatctttactttctttttt
atacatgaataaatatcatgaccctgtaaatagtgtccctgcttcttcat
ctagcaaacacatgagtgaactgtgtccaaccgtgaaactggtacactaa
c
gaattcctcacttctttcagctactctgggcaacactggcagccagaggg
tgccactccgggtccttattctcaaaccctgtggttccaaaccaacttta
gcatccttggccgctggttctcagatcgctctggtctcttcacaagccca
tcactaagggcccctggcactgatccacatttctctccagtaaggttggg
ctatcttctgtacccacttctgcaggctcaggcaggtggctttggatgtc
tctgtcttcggctgatgacaagagaccagaggttcaaaaaacaagaacct
ctctcttgtttcctctgaagtgagagctgtgcttttacactgatggagaa
tttataaaagccatatgggctggggcaggggactgatttagaggctgcca
tgggaccagcaccagctgtcacagaggggtaaatagacccatgaaattca
gcaatttcctcctcctgaaagagacccaggacagctcactgcttagctca
agagtagggctttcattttggccatctgcgtgacagagctctcgtggaat
acagacaactcatttaaatcaaattgcacagttggctctaagccagcagc
aacgcacccatccgtaggcagccacagaaagggcatggcaaatggaggac
aaagaaataacagagaaagagaaatgtgtgcccagggtccatttggacct
gctctaaaccccgccccaagtgtgagaagcagaaacaggtaaaagcatat
ctaaaaagaagaaacacggaaagagatcaagtgcccaggcagggcaagcc
tgggctaactgcacctgcagatgcgggaagatggggattactaactacca
cctgcaggaaagcttttccgggagaagaacagacaagtagaaagtactga
gttctggcagctagaaaagacgctggttttggattcctagcaaggtagtt
tgttccgtccctctggaatccttgtgctgctgagctgggcagttcgggca
aacagcaggagtcagagcggaggctgacgactgaaatggcacctggccct
tcccaaggggagctagaaagcctgctccaatggacccccggttgaaggct
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_6681422_6682523
seq2: B6Ng01-148O08.b_44_1144 (reverse)

seq1  GTTATGTGT-CCAGTTTTCACGGTGTGACACAGTTCACTTCATGTGTATG  49
      |||| |||| |||| |||||||||  |||||||||||| |||||||| ||
seq2  GTTA-GTGTACCAG-TTTCACGGTTGGACACAGTTCAC-TCATGTGTTTG  47

seq1  CTTAGATTGAG-AGCAGGGACACTATTTACAGGGTCATGATATTTTATTC  98
      | |||||  || |||||||||||||||||||||||||||||| |||||||
seq2  C-TAGATGAAGAAGCAGGGACACTATTTACAGGGTCATGATA-TTTATTC  95

seq1  ATGTAT-AAAAAGAAAGTAAAGATTTTTAATATTCTTTGAAGTCTTGAAG  147
      |||||| |||||||||||||||||||||||||||| |||||||| |||||
seq2  ATGTATAAAAAAGAAAGTAAAGATTTTTAATATTCCTTGAAGTC-TGAAG  144

seq1  ACAAAGCAGACAGTAAAAAGGTAG-AAATTGTTGGACAGTGGAGCCGCAT  196
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACAAAGCAGACAGTAAAAAGGTAGAAAATTGTTGGACAGTGGAGCCGCAT  194

seq1  ACC-TTCATTCTCAGCTCTCAGAGGCAGAGGTAAGCAGATCTCTATGAGG  245
      ||| ||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACCTTTCATTCTCAGCTCTCAGAAGCAGAGGTAAGCAGATCTCTATGAGG  244

seq1  TCGAGGCCAGCCCGGTCTACAGAGTAAGTTCCAGGACAGTCAAGACTACA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCCAGCCCGGTCTACAGAGTAAGTTCCAGGACAGTCAAGACTACA  294

seq1  CAGAGAAATCATGTCTCAAACAACAACACCGCCAAAACAAACGAAGCAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAATCATGTCTCAAACAACAACACCGCCAAAACAAACGAAGCAAA  344

seq1  CAAAAATCCAAAATGATAGAATATCTTTGTGTGTGGGAGTGTGCGTGTTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATCCAAAATGATAGAATATCTTTGTGTGTGGGAGTGTGCGTGTTT  394

seq1  ATGTATGTGTACACGTGTGTAAATGTGTTCACACATGGAGATCAGTGGAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTGTACACGTGTGTAAATGTGTTCACACATGGAGATCAGTGGAG  444

seq1  ACACCCTTAGGTATTGGTCTTCGCCTTCTCCCTTTGTCTTGTAAAGATTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTTAGGTATTGGTCTTCGCCTTCTCCCTTTGTCTTGTAAAGATTT  494

seq1  ATGTTTTGTTGTGTGTGTCTGGGGTGGAGTGTGTGCATGCAAATGCTGGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGTTGTGTGTGTCTGGGGTGGAGTGTGTGCATGCAAATGCTGGT  544

seq1  GCCCTCAGAGGCCAGGGGCATCAGATCCAGAGCTGGAGTCACAGATAGTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCAGAGGCCAGGGGCATCAGATCCAGAGCTGGAGTCACAGATAGTT  594

seq1  GCGAGCTGCCCTATATGGGTACCGGAAACTGGAGAGCAGTATGCACCGCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCTGCCCTATATGGGTACCGGAAACTGGAGAGCAGTATGCACCGCT  644

seq1  GAGGGGTCTTTAGAGCCCTGTCTTCCATTCTTCCACCTTGTCTGAAACAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTCTTTAGAGCCCTGTCTTCCATTCTTCCACCTTGTCTGAAACAG  694

seq1  GACCTCTTTAACGTTCACTACCGCGTATGCCAGGGTAGCCAGCCTCTGAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTTTAACGTTCACTACCGCGTATGCCAGGGTAGCCAGCCTCTGAG  744

seq1  CTCCTGAGAATTTGACCCTTCCTCGGGAGTGCTGGGATTATAGGCTCAAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGAATTTGACCCTTCCTCGGGAGTGCTGGGATTATAGGCTCAAG  794

seq1  GTATCACGTCTAACTTTATGTGGCTTCTAGAGATCCAAACTCGGCACCAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACGTCTAACTTTATGTGGCTTCTAGAGATCCAAACTCGGCACCAA  844

seq1  CTGTACCCACTGAGCCCAACCCTAGAATACCTTTTTGGTGCTTAATAAAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCCACTGAGCCCAACCCTAGAATACCTTTTTGGTGCTTAATAAAG  894

seq1  AGAATGCATTTTTGAGACAGGGTCTTGCTAGGTAGTTCAGGTCCAGGGTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCATTTTTGAGACAGGGTCTTGCTAGGTAGTTCAGGTCCAGGGTG  944

seq1  GCCTCAAACTCACAAGTCTCCTGCCTCCAACTCTTGAGTGGTTAGGATTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAACTCACAAGTCTCCTGCCTCCAACTCTTGAGTGGTTAGGATTA  994

seq1  GTAGGCTCACACCAGCATGCACAGGGAGAACATGATCGCAGTGACCATTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTCACACCAGCATGCACAGGGAGAACATGATCGCAGTGACCATTT  1044

seq1  CTATTCAAGGCCAGGCTCAGTTTGTGGTCAGTGTGCTTGAAACCCTTTAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAAGGCCAGGCTCAGTTTGTGGTCAGTGTGCTTGAAACCCTTTAG  1094

seq1  AGAATTC  1102
      |||||||
seq2  AGAATTC  1101

seq1: chr17_6546219_6547477
seq2: B6Ng01-148O08.g_68_1168

seq1  GAATTCCTCACTTCTTTCAGCTACTCTGGGCAACACTGGCAGCCAGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACTTCTTTCAGCTACTCTGGGCAACACTGGCAGCCAGAGGG  50

seq1  TGCCACTCCGGGTCCTTATTCTCAAACCCTGTGGTTCCAAACCAACTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTCCGGGTCCTTATTCTCAAACCCTGTGGTTCCAAACCAACTTTA  100

seq1  GCATCCTTGGCCGCTGGTTCTCAGATCGCTCTGGTCTCTTCACAAGCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTTGGCCGCTGGTTCTCAGATCGCTCTGGTCTCTTCACAAGCCCA  150

seq1  TCACTAAGGGCCCCTGGCACTGATCCACATTTCTCTCCAGTAAGGTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAGGGCCCCTGGCACTGATCCACATTTCTCTCCAGTAAGGTTGGG  200

seq1  CTATCTTCTGTACCCACTTCTGCAGGCTCAGGCAGGTGGCTTTGGATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTCTGTACCCACTTCTGCAGGCTCAGGCAGGTGGCTTTGGATGTC  250

seq1  TCTGTCTTCGGCTGATGACAAGAGACCAGAGGTTCAAAAAACAAGAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTCGGCTGATGACAAGAGACCAGAGGTTCAAAAAACAAGAACCT  300

seq1  CTCTCTTGTTTCCTCTGAAGTGAGAGCTGTGCTTTTACACTGATGGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTGTTTCCTCTGAAGTGAGAGCTGTGCTTTTACACTGATGGAGAA  350

seq1  TTTATAAAAGCCATATGGGCTGGGGCAGGGGACTGATTTAGAGGCTGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAAGCCATATGGGCTGGGGCAGGGGACTGATTTAGAGGCTGCCA  400

seq1  TGGGACCAGCACCAGCTGTCACAGAGGGGTAAATAGACCCATGAAATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCAGCACCAGCTGTCACAGAGGGGTAAATAGACCCATGAAATTCA  450

seq1  GCAATTTCCTCCTCCTGAAAGAGACCCAGGACAGCTCACTGCTTAGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTCCTCCTCCTGAAAGAGACCCAGGACAGCTCACTGCTTAGCTCA  500

seq1  AGAGTAGGGCTTTCATTTTGGCCATCTGCGTGACAGAGCTCTCGTGGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGGGCTTTCATTTTGGCCATCTGCGTGACAGAGCTCTCGTGGAAT  550

seq1  ACAGACAACTCATTTAAATCAAATTGCACAGTTGGCTCTAAGCCAGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAACTCATTTAAATCAAATTGCACAGTTGGCTCTAAGCCAGCAGC  600

seq1  AACGCACCCATCCGTAGGCAGCCACAGAAAGGGCATGGCAAATGGAGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCACCCATCCGTAGGCAGCCACAGAAAGGGCATGGCAAATGGAGGAC  650

seq1  AAAGAAATAACAGAGAAAGAGAAATGTGTGCCCAGGGTCCATTTGGACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATAACAGAGAAAGAGAAATGTGTGCCCAGGGTCCATTTGGACCT  700

seq1  GCTCTAAACCCCGCCCCAAGTGTGAGAAGCAGAAACAGGTAAAAGCATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAACCCCGCCCCAAGTGTGAGAAGCAGAAACAGGTAAAAGCATAT  750

seq1  CTAAAAAGAAGAAACACGGAAAGAGATCAAGTGCCCAGGCAGGGCAAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAGAAGAAACACGGAAAGAGATCAAGTGCCCAGGCAGGGCAAGCC  800

seq1  TGGGCTAACTGCACCTGCAGATGCGGGAAGATGGGGATTACTAACTACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTAACTGCACCTGCAGATGCGGGAAGATGGGGATTACTAACTACCA  850

seq1  CCTGCAGGAAAGCTTTCCAGGGAGAAGAACAGACAAGTAGAAGGTACTGA  900
      |||||||||||||||| | ||||||||||||||||||||||| |||||||
seq2  CCTGCAGGAAAGCTTTTCCGGGAGAAGAACAGACAAGTAGAAAGTACTGA  900

seq1  GTTCTGGCAGCTAG-AAAGACGCTGGTTTTGGATTCCTAGCAAGGTAGTT  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTTCTGGCAGCTAGAAAAGACGCTGGTTTTGGATTCCTAGCAAGGTAGTT  950

seq1  TTGTTTCCGTCCCTCTGGAATCCTTTGTGCTGCTGAGCTGGGCAGGTTCG  999
      |   ||||||||||||||||||| |||||||||||||||||||| |||||
seq2  T--GTTCCGTCCCTCTGGAATCC-TTGTGCTGCTGAGCTGGGCA-GTTCG  996

seq1  GGCAAAACAAGCAGGAGTCAGAGC-GAGGCTGACAGACTGAAATGGCACC  1048
      ||||||   ||||||||||||||| ||||||||| |||||||||||||||
seq2  GGCAAA--CAGCAGGAGTCAGAGCGGAGGCTGAC-GACTGAAATGGCACC  1043

seq1  T-GCCCT--CCACAGGGAGCTAG--AGGCTGCTCC-ATTGACCCCCGGTT  1092
      | |||||  |||  |||||||||  || ||||||| || |||||||||||
seq2  TGGCCCTTCCCAAGGGGAGCTAGAAAGCCTGCTCCAATGGACCCCCGGTT  1093

seq1  G-AGGCTGCCTGAGCTGACCTGCACAGGGCACGGTAGAAGAACAAATACA  1141
      | ||||||                                          
seq2  GAAGGCTG------------------------------------------  1101

seq1  TCCTGAGGGTTACTTACTTCTCATCTGGGTGGTGACAGACAGAAACAAGT  1191
                                                        
seq2  --------------------------------------------------  1101

seq1  TTTCCACAGACTTATTAAATCCTCTGAAGTGGCCAAGTTCCTGTAACTAA  1241
                                                        
seq2  --------------------------------------------------  1101

seq1  AATAGAAACAGGAGGCTG  1259
                        
seq2  ------------------  1101