BAC Information

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BAC

Clone NameB6Ng01-149L06
Chromosome17 (Build37)
Map Location 24,200,457 - 24,373,613
singlet/doubletdoublet
Overlap geneKctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf
Upstream geneLOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27
Downstream geneAbca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149L06.bB6Ng01-149L06.g
ACCDH945969DH945970
length1,1281,007
definitionDH945969|Mus musculus domesticus DNA, BAC clone: B6Ng01-149L06, 5' end.DH945970|Mus musculus domesticus DNA, BAC clone: B6Ng01-149L06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,200,457 - 24,201,580)(24,372,599 - 24,373,613)
sequence
gaattcaaaaattttgctgagccaggctggtgggcaagaacaacaggaac
ctgaacatatccacagtcctgtgtgatttgtgacagccccagcaccaagc
ctcctggtcacccaggcaagcgagcatgtgctgagaatggcaggaaatgg
aaacagggaggtgtcaggcagagtcctagagacagtagttgtcaccggct
ggaaagtaaagctgtggcacaaggtgaggcagtgtggcctatactgtgct
atgtcagaggtgttaatctccataaccagaagcagcccgaggagaagggg
ggttccttcagcttacaaccccacaccacagctcatcactgaaggaagtc
agagaagagccttaagctggacagaaacctggaagcaagagccgatacag
agacggtagaagagtgctgcttcactgcttgctcacctcctttgatagca
ccatgaaccaccagtcccggggaggtactacccagtgaactgggctctcc
cacaacattcattggttaagggggggaacaaaaataaaaaaacccaacca
caggctggcccacagaccaatctggtgggggtatttttctcaagtgaggt
tccctcttcccaaatgactttagactgttacaagctgatacaaaattaat
cagtggggctggagagatggctcagaggttaagagcattcgctgctcttg
tggaggacccatgcttggttcccagcacacacagtggctcacaaccacat
gcaaccccagtcccaagggatctaatgccccctctggcctttctgggcac
aaagcatacacacggggcatatacattaatgtagacaaaacattcataaa
aataataaaaatacataagtcatttttagccagggcagtggtggcatatt
gctttttatcgcagcactcaagaggcagaggccggcagatctcttctgaa
ttcaagggcaggctagtctatcgagttccagtgacagtctgagctacgca
gagaaaccatgtactgaaaaaacaaagttaaatcaaaaaatagattacca
atacaattgatcagctgtcaactgacacaaaaccgcatcactgttcaacc
tttccttttcttcctgtccccagatgtc
gaattcacagttggtcaccacacacagctggcactttcatgggttctgga
tccaaatgccagtgcttgtacttgttcagcaaatacttaaccatcttccc
agtcctgttgtagcttagactagccctgaatttctagttatcctacttta
gcctcctgcattgttctgagagtacaggtgtaagccaccaaagtctttaa
agcggaaaagcatgctaaattgttcaaatcatcattatgaaatgatgaga
cttatcactccgatttctgaagctgaaatacaacttttggtttttggttt
ttgttttgttttttggatggaagaggatctagatttttgagcccagcacc
ttattcatgatgaattgcctctaacccacaacccctataaatataacctt
ttctttacagctctctttataatcagtatattttctgccactcagtgact
agaggtcagacctagggagctggtgaacccctcctcacccctatcccagc
catcccatcccttgggttagctactgtgatacccagcacaactgtctatt
ccaggcttcaaacgttagtgataacacaataaattgcagagtgtgtttga
gggtacctagaattagggacatgtgaatggtgttttaagctttcatctga
aatttcaagtaaaatttttggtttatgatgggaaacctctggccccttgc
aagcactgcttggaacatgaactatgtttagtaaatgctttttttttttt
ttttttttaaatcattgtcctggggccatggaggtggccctcagtggagt
aattttgctcgatgcacaaaattggtgacctgagtttgttcccagactgg
aggtctggagggagtcgcatttgcttataatcctgaactgaggaagtgta
gacgagtgggtttcagaaggttctgtgcgcgcctccttttactattggga
agcccaagttgagcatgcctttattcaatcttgatagccaataactgatt
tctaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_24200457_24201580
seq2: B6Ng01-149L06.b_43_1170

seq1  GAATTCAAAAATTTTGCTGAGCCAGGCTGGTGGGCAAGAACAACAGGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAATTTTGCTGAGCCAGGCTGGTGGGCAAGAACAACAGGAAC  50

seq1  CTGAACATATCCACAGTCCTGTGTGATTTGTGACAGCCCCAGCACCAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACATATCCACAGTCCTGTGTGATTTGTGACAGCCCCAGCACCAAGC  100

seq1  CTCCTGGTCACCCAGGCAAGCGAGCATGTGCTGAGAATGGCAGGAAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGTCACCCAGGCAAGCGAGCATGTGCTGAGAATGGCAGGAAATGG  150

seq1  AAACAGGGAGGTGTCAGGCAGAGTCCTAGAGACAGTAGTTGTCACCGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGGAGGTGTCAGGCAGAGTCCTAGAGACAGTAGTTGTCACCGGCT  200

seq1  GGAAAGTAAAGCTGTGGCACAAGGTGAGGCAGTGTGGCCTATACTGTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTAAAGCTGTGGCACAAGGTGAGGCAGTGTGGCCTATACTGTGCT  250

seq1  ATGTCAGAGGTGTTAATCTCCATAACCAGAAGCAGCCCGAGGAGAAGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGAGGTGTTAATCTCCATAACCAGAAGCAGCCCGAGGAGAAGGGG  300

seq1  GGTTCCTTCAGCTTACAACCCCACACCACAGCTCATCACTGAAGGAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTTCAGCTTACAACCCCACACCACAGCTCATCACTGAAGGAAGTC  350

seq1  AGAGAAGAGCCTTAAGCTGGACAGAAACCTGGAAGCAAGAGCCGATACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAGCCTTAAGCTGGACAGAAACCTGGAAGCAAGAGCCGATACAG  400

seq1  AGACGGTAGAAGAGTGCTGCTTCACTGCTTGCTCACCTCCTTTGATAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGGTAGAAGAGTGCTGCTTCACTGCTTGCTCACCTCCTTTGATAGCA  450

seq1  CCATGAACCACCAGTCCCGGGGAGGTACTACCCAGTGAACTGGGCTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAACCACCAGTCCCGGGGAGGTACTACCCAGTGAACTGGGCTCTCC  500

seq1  CACAACATTCATTGGTTAAGGGGGGGAACAAAAATAAAAAAACCCAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACATTCATTGGTTAAGGGGGGGAACAAAAATAAAAAAACCCAACCA  550

seq1  CAGGCTGGCCCACAGACCAATCTGGTGGGGGTATTTTTCTCAAGTGAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCCCACAGACCAATCTGGTGGGGGTATTTTTCTCAAGTGAGGT  600

seq1  TCCCTCTTCCCAAATGACTTTAGACTGTTACAAGCTGATACAAAATTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTTCCCAAATGACTTTAGACTGTTACAAGCTGATACAAAATTAAT  650

seq1  CAGTGGGGCTGGAGAGATGGCTCAGAGGTTAAGAGCATTCGCTGCTCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGGCTGGAGAGATGGCTCAGAGGTTAAGAGCATTCGCTGCTCTTG  700

seq1  TGGAGGACCCATGCTTGGTTCCCAGCACACACAGTGGCTCACAACCACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGACCCATGCTTGGTTCCCAGCACACACAGTGGCTCACAACCACAT  750

seq1  GCAACCCCAGTCCCAAGGGATCTAATGCCCCCTCTGGCCTTTCTGGGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCCCAGTCCCAAGGGATCTAATGCCCCCTCTGGCCTTTCTGGGCAC  800

seq1  CAAGCATACACACGGGGCATATACA-TAATGTAGACAAAACATTCAT-AA  848
       |||||||||||||||||||||||| ||||||||||||||||||||| ||
seq2  AAAGCATACACACGGGGCATATACATTAATGTAGACAAAACATTCATAAA  850

seq1  AATAAT-AAAATACATAAGTCA-TTTTAGCCA-GGCAGTGGTGGCATA-T  894
      |||||| ||||||||||||||| ||||||||| ||||||||||||||| |
seq2  AATAATAAAAATACATAAGTCATTTTTAGCCAGGGCAGTGGTGGCATATT  900

seq1  GCTATTAATCGCAGCACTCAAGAGGCAGAGGCCGGCAGATCTC-TCTGAA  943
      ||| || |||||||||||||||||||||||||||||||||||| ||||||
seq2  GCTTTTTATCGCAGCACTCAAGAGGCAGAGGCCGGCAGATCTCTTCTGAA  950

seq1  TTCAAGGCCAGGCTAGTCTATCGAGTTCCAGGGACAGTCTGAGCTACGCA  993
      ||||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCAAGGGCAGGCTAGTCTATCGAGTTCCAGTGACAGTCTGAGCTACGCA  1000

seq1  GAGAAACCATGTACTGAAAAAACAAAGTTAAATCAAAAAATAAGATTAAC  1043
      ||||||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  GAGAAACCATGTACTGAAAAAACAAAGTTAAATCAAAAAAT-AGATT-AC  1048

seq1  CAATACAATTGATCAGCTGTCAACTTGACACACAAACGCATCACTGTTCA  1093
      |||||||||||||||||||||||| ||||||| || ||||||||||||||
seq2  CAATACAATTGATCAGCTGTCAAC-TGACACAAAACCGCATCACTGTTCA  1097

seq1  ACCTTTCC-TTTCTTACTGTCCCCAAGATGTC  1124
      |||||||| |||||| |||||||| |||||||
seq2  ACCTTTCCTTTTCTTCCTGTCCCC-AGATGTC  1128

seq1: chr17_24372599_24373613
seq2: B6Ng01-149L06.g_69_1075 (reverse)

seq1  TTTTAGAAATCAGATTATTGGGCTATCAAGAGTTGGATTAAAGGCATGCA  50
      ||||||||||||| ||||| |||||||||||  | || ||||||||||| 
seq2  TTTTAGAAATCAG-TTATT-GGCTATCAAGA--TTGAATAAAGGCATGC-  45

seq1  TCAACCTGGGGCTTCCCAATAGTACTAGGATGGCTGCGCACAGAACC-TC  99
      |||| || ||||||||||||||||  |||| ||| |||||||||||| ||
seq2  TCAA-CTTGGGCTTCCCAATAGTAAAAGGA-GGC-GCGCACAGAACCTTC  92

seq1  TGGAACCCACTCATCTCCACTTCCTCAGTATCAGGATTATAGGCACATGC  149
      || ||||||||| ||| |||||||||||| ||||||||||| ||| ||||
seq2  TGAAACCCACTCGTCTACACTTCCTCAGT-TCAGGATTATAAGCAAATGC  141

seq1  GACTCCCT-CAGACCTCCAGTACTGGGTACCAAACTCAAGTCACCATTCT  198
      |||||||| |||||||||||| ||||| | |||||||| ||||||| | |
seq2  GACTCCCTCCAGACCTCCAGT-CTGGG-AACAAACTCAGGTCACCAATTT  189

seq1  TGTGCATCGAGC-AAATTACT-CACTGA-GGCCACCTCCATGGCCCCAGG  245
      |||||||||||| |||||||| |||||| |||||||||||||||||||||
seq2  TGTGCATCGAGCAAAATTACTCCACTGAGGGCCACCTCCATGGCCCCAGG  239

seq1  ACAATGATTTAAAAAAAAAAAAAAAAAAAAAAAGCATTTACTAAACATAG  295
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  ACAATGATTT---AAAAAAAAAAAAAAAAAAAAGCATTTACTAAACATAG  286

seq1  TTCATGTTCCAAGCAGTGCTTGCAAGGGGCCAGAGGTTTCCCATCATAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTCCAAGCAGTGCTTGCAAGGGGCCAGAGGTTTCCCATCATAAA  336

seq1  CC-AAAATTTTACTTGAAATTTCAGATGAAAGCTTAAAACACCATTCACA  394
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATTTTACTTGAAATTTCAGATGAAAGCTTAAAACACCATTCACA  386

seq1  TGTCCCTAATTCTAGGTACCCTCAAACACACTCTGCAATTTATTGTGTTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTAATTCTAGGTACCCTCAAACACACTCTGCAATTTATTGTGTTA  436

seq1  TCACTAACGTTTGAAGCCTGGAATAGACAGTTGTGCTGGGTATCACAGTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAACGTTTGAAGCCTGGAATAGACAGTTGTGCTGGGTATCACAGTA  486

seq1  GCTAACCCAAGGGATGGGATGGCTGGGATAGGGGTGAGGAGGGGTTCACC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACCCAAGGGATGGGATGGCTGGGATAGGGGTGAGGAGGGGTTCACC  536

seq1  AGCTCCCTAGGTCTGACCTCTAGTCACTGAGTGGCAGAAAATATACTGAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCTAGGTCTGACCTCTAGTCACTGAGTGGCAGAAAATATACTGAT  586

seq1  TATAAAGAGAGCTGTAAAGAAAAGGTTATATTTATAGGGGTTGTGGGTTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGAGAGCTGTAAAGAAAAGGTTATATTTATAGGGGTTGTGGGTTA  636

seq1  GAGGCAATTCATCATGAATAAGGTGCTGGGCTCAAAAATCTAGATCCTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAATTCATCATGAATAAGGTGCTGGGCTCAAAAATCTAGATCCTCT  686

seq1  TCCATCCAAAAAACAAAACAAAAACCAAAAACCAAAAGTTGTATTTCAGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCAAAAAACAAAACAAAAACCAAAAACCAAAAGTTGTATTTCAGC  736

seq1  TTCAGAAATCGGAGTGATAAGTCTCATCATTTCATAATGATGATTTGAAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAATCGGAGTGATAAGTCTCATCATTTCATAATGATGATTTGAAC  786

seq1  AATTTAGCATGCTTTTCCGCTTTAAAGACTTTGGTGGCTTACACCTGTAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGCATGCTTTTCCGCTTTAAAGACTTTGGTGGCTTACACCTGTAC  836

seq1  TCTCAGAACAATGCAGGAGGCTAAAGTAGGATAACTAGAAATTCAGGGCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAACAATGCAGGAGGCTAAAGTAGGATAACTAGAAATTCAGGGCT  886

seq1  AGTCTAAGCTACAACAGGACTGGGAAGATGGTTAAGTATTTGCTGAACAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAGCTACAACAGGACTGGGAAGATGGTTAAGTATTTGCTGAACAA  936

seq1  GTACAAGCACTGGCATTTGGATCCAGAACCCATGAAAGTGCCAGCTGTGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGCACTGGCATTTGGATCCAGAACCCATGAAAGTGCCAGCTGTGT  986

seq1  GTGGTGACCAACTGTGAATTC  1015
      |||||||||||||||||||||
seq2  GTGGTGACCAACTGTGAATTC  1007