BAC Information

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BAC

Clone NameB6Ng01-150K05
Chromosome17 (Build37)
Map Location 78,505,456 - 78,675,605
singlet/doubletdoublet
Overlap geneLOC668795, LOC383275, Crim1
Upstream geneLOC545234, LOC100043887
Downstream geneFez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150K05.bB6Ng01-150K05.g
ACCDH946667DH946668
length1,1061,070
definitionDH946667|Mus musculus domesticus DNA, BAC clone: B6Ng01-150K05, 5' end.DH946668|Mus musculus domesticus DNA, BAC clone: B6Ng01-150K05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,674,480 - 78,675,605)(78,505,456 - 78,506,480)
sequence
gaattcatttaaaactcccaattcccatcagactttgctgacaaggctta
gctctgtgtgctcctctgttcctttatgttttgggatctttttctctttc
gggttcttgtcagtcttttggaagaatctaaacatcaaataccaaattca
cttctatttctctcttgttttcttacacacacataaaaatatgactttca
catcatagccaaatgctactttgtgtcttaaaggttgtttttttttttta
aacatgcttcgcaatctggcctgttttgaaataatctataattcaacatt
gatttcctctttgaagtttttcagttaagtgttgtaaaatttctgtgctg
ctaagctggggggagaggagctctccttttgtttaaatttactgatttgt
cactagaaacgcacatgctgtgcaatgttttggttttgttaatttcttaa
gattttgtgggattttttccccctttgcacacatgtgtgtacagatgcag
ttttgtgggcaattttaaaaacacacgtgttagaaagtaacatatactct
actgaatgcagactttatatcatccgtgtctcactcgaactttcggtcag
atttctgcaagctctcccatgagtcagtgacttcacccagctctgctgtt
taccatctctcttcagagctgtgctgttaataagatgattggcagggaca
aggctcaagtcttacactgagttggtagactgtgaaatgatgctttcaaa
gaactgagatttgtagaacctacagattcctccttatctcctaactgcta
atagttgcttttttgccccctctctgtgtttgctcagcatccagcacgca
ctccactcactgggttaccatggcatcagcaactgttggcttggcccctt
ctctctgagcctgtttcaagtgcataagttctccttggaaatctttattt
atcttctacatctcttcctgtttgtttttattaaaaaaaaaagaaactgt
agcctattcgccaaattcccacgatgaaaaggcatactttagttcaattt
tttttatcatttgaagaggtcctcttactctcccctaagcattacatcta
taatag
gaattccttttggaagggatcaaaaagacatcgaaaaaatcattttgtta
aaataaaactggttggcatcatttgttgttcagtctctatgtgttaagaa
agttcatggcttagctgacatcctgactgtaacggtctaaaaggctggag
gaataagctagctattctgaaaatgtcctcaagcaagtttttagaggaaa
cagctgtgatgcagttgaggtagagtcaagcaggaagttggaacagcagg
tctcagcatcttagaatcccagaaggtgaatctggtcagggttgtctttc
tggtctttcattctgcaatatacaagccttacaagtaacacatatctctg
taaagacatttgtatggaacatgtagggtgcacagatctgttaaggaaga
tcaatttaaaaagacaactatcttttttagagattagcatgatcatataa
tcctactgcaatataaatttctattcatgtcatcttaaaggatggtatgt
aataataagtcatcaacattttgtagccagtaagatttattagctatata
tagacatttacgttttaaacataaacatataaattaagtaaattaagtat
ttttatgtttgtgtgtcacaagaattaaagaaaaagatgccattagagaa
ggattaagaagagaattatagagggtggaggtaggagagaaagggaaaat
aatgtaattacattttaatttttaaaattgcaaataaaataagaaagaat
tcaaaaagcaagtatttagactaggatagcactgattttgcataactgag
accctatttattattaaatgattatgtgatatgaagacactttattaaaa
ctacagcttagttgcatttacaattaaatatcatcataaaagttcatata
taaaaagataatagttgacatggatagaaaagaatgcatacctccaaaaa
atctagtaagggaattgagccccagttatcaatatgtcaaaggctagcag
ctgcttagatacaaacactcatgagtgctatcagctctctaaaagaaaag
aaaaaggtacctcaatgtcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_78674480_78675605
seq2: B6Ng01-150K05.b_45_1150 (reverse)

seq1  CTATATATAGATTTGTTAAATGCTTTTGGGGAAGAGTATAGAAGGACCTC  50
      |||| ||||||| |    |||||  || ||| |||||| || ||||||||
seq2  CTAT-TATAGATGT----AATGC--TTAGGGGAGAGTA-AG-AGGACCTC  41

seq1  TTTTCAAATAGATTAAAAAAAAATTGAAACTAAAGTAATGCCTTTCTCAT  100
        ||||||| |||  ||||||||||| ||||||||| |||||||| ||| 
seq2  --TTCAAAT-GAT--AAAAAAAATTG-AACTAAAGT-ATGCCTTT-TCA-  82

seq1  TCGTGGGAAATTGGCGATATGGCTACAGTTTCCTTTTTTTTTTTAATTAA  150
      ||||||||| |||||||   ||||||||||||  |||||||||||| |||
seq2  TCGTGGGAATTTGGCGAATAGGCTACAGTTTC--TTTTTTTTTTAA-TAA  129

seq1  AAACAAACAGG-AGAGATGTAGAAGAATAAATAAAGATTTCCAA-GAGAA  198
      ||||||||||| ||||||||||||| |||||||||||||||||| |||||
seq2  AAACAAACAGGAAGAGATGTAGAAG-ATAAATAAAGATTTCCAAGGAGAA  178

seq1  CTTATGCACTTGAAACAGGCTCAGAGAGAAGGGGCCAAGCCAACAGTTGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGCACTTGAAACAGGCTCAGAGAGAAGGGGCCAAGCCAACAGTTGC  228

seq1  TGATGCCATGGTAACCCAGTGAGTGGAGTGCGTGCTGGATGCTGAGCAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCATGGTAACCCAGTGAGTGGAGTGCGTGCTGGATGCTGAGCAAA  278

seq1  CACAGAGAGGGGGCAAAAAAGCAACTATTAGCAGTTAGGAGATAAGGAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAGGGGGCAAAAAAGCAACTATTAGCAGTTAGGAGATAAGGAGG  328

seq1  AATCTGTAGGTTCTACAAATCTCAGTTCTTTGAAAGCATCATTTCACAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTAGGTTCTACAAATCTCAGTTCTTTGAAAGCATCATTTCACAGT  378

seq1  CTACCAACTCAGTGTAAGACTTGAGCCTTGTCCCTGCCAATCATCTTATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAACTCAGTGTAAGACTTGAGCCTTGTCCCTGCCAATCATCTTATT  428

seq1  AACAGCACAGCTCTGAAGAGAGATGGTAAACAGCAGAGCTGGGTGAAGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCACAGCTCTGAAGAGAGATGGTAAACAGCAGAGCTGGGTGAAGTC  478

seq1  ACTGACTCATGGGAGAGCTTGCAGAAATCTGACCGAAAGTTCGAGTGAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTCATGGGAGAGCTTGCAGAAATCTGACCGAAAGTTCGAGTGAGA  528

seq1  CACGGATGATATAAAGTCTGCATTCAGTAGAGTATATGTTACTTTCTAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGATGATATAAAGTCTGCATTCAGTAGAGTATATGTTACTTTCTAAC  578

seq1  ACGTGTGTTTTTAAAATTGCCCACAAAACTGCATCTGTACACACATGTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTGTTTTTAAAATTGCCCACAAAACTGCATCTGTACACACATGTGT  628

seq1  GCAAAGGGGGAAAAAATCCCACAAAATCTTAAGAAATTAACAAAACCAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGGGGAAAAAATCCCACAAAATCTTAAGAAATTAACAAAACCAAA  678

seq1  ACATTGCACAGCATGTGCGTTTCTAGTGACAAATCAGTAAATTTAAACAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCACAGCATGTGCGTTTCTAGTGACAAATCAGTAAATTTAAACAA  728

seq1  AAGGAGAGCTCCTCTCCCCCCAGCTTAGCAGCACAGAAATTTTACAACAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGCTCCTCTCCCCCCAGCTTAGCAGCACAGAAATTTTACAACAC  778

seq1  TTAACTGAAAAACTTCAAAGAGGAAATCAATGTTGAATTATAGATTATTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGAAAAACTTCAAAGAGGAAATCAATGTTGAATTATAGATTATTT  828

seq1  CAAAACAGGCCAGATTGCGAAGCATGTTTAAAAAAAAAAAACAACCTTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAGGCCAGATTGCGAAGCATGTTTAAAAAAAAAAAACAACCTTTA  878

seq1  AGACACAAAGTAGCATTTGGCTATGATGTGAAAGTCATATTTTTATGTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAAAGTAGCATTTGGCTATGATGTGAAAGTCATATTTTTATGTGT  928

seq1  GTGTAAGAAAACAAGAGAGAAATAGAAGTGAATTTGGTATTTGATGTTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGAAAACAAGAGAGAAATAGAAGTGAATTTGGTATTTGATGTTTA  978

seq1  GATTCTTCCAAAAGACTGACAAGAACCCGAAAGAGAAAAAGATCCCAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTCCAAAAGACTGACAAGAACCCGAAAGAGAAAAAGATCCCAAAA  1028

seq1  CATAAAGGAACAGAGGAGCACACAGAGCTAAGCCTTGTCAGCAAAGTCTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGGAACAGAGGAGCACACAGAGCTAAGCCTTGTCAGCAAAGTCTG  1078

seq1  ATGGGAATTGGGAGTTTTAAATGAATTC  1126
      ||||||||||||||||||||||||||||
seq2  ATGGGAATTGGGAGTTTTAAATGAATTC  1106

seq1: chr17_78505456_78506480
seq2: B6Ng01-150K05.g_115_1136

seq1  TAAAATAAAACTGGTTGGCATCATTTGTTGTTCAGTCTCTATGTGTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAAACTGGTTGGCATCATTTGTTGTTCAGTCTCTATGTGTTAAG  50

seq1  AAAGTTCATGGCTTAGCTGACATCCTGACTGTAACGGTCTAAAAGGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCATGGCTTAGCTGACATCCTGACTGTAACGGTCTAAAAGGCTGG  100

seq1  AGGAATAAGCTAGCTATTCTGAAAATGTCCTCAAGCAAGTTTTTAGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAAGCTAGCTATTCTGAAAATGTCCTCAAGCAAGTTTTTAGAGGA  150

seq1  AACAGCTGTGATGCAGTTGAGGTAGAGTCAAGCAGGAAGTTGGAACAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTGTGATGCAGTTGAGGTAGAGTCAAGCAGGAAGTTGGAACAGCA  200

seq1  GGTCTCAGCATCTTAGAATCCCAGAAGGTGAATCTGGTCAGGGTTGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCAGCATCTTAGAATCCCAGAAGGTGAATCTGGTCAGGGTTGTCTT  250

seq1  TCTGGTCTTTCATTCTGCAATATACAAGCCTTACAAGTAACACATATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCTTTCATTCTGCAATATACAAGCCTTACAAGTAACACATATCTC  300

seq1  TGTAAAGACATTTGTATGGAACATGTAGGGTGCACAGATCTGTTAAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGACATTTGTATGGAACATGTAGGGTGCACAGATCTGTTAAGGAA  350

seq1  GATCAATTTAAAAAGACAACTATCTTTTTTAGAGATTAGCATGATCATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATTTAAAAAGACAACTATCTTTTTTAGAGATTAGCATGATCATAT  400

seq1  AATCCTACTGCAATATAAATTTCTATTCATGTCATCTTAAAGGATGGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTACTGCAATATAAATTTCTATTCATGTCATCTTAAAGGATGGTAT  450

seq1  GTAATAATAAGTCATCAACATTTTGTAGCCAGTAAGATTTATTAGCTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAATAAGTCATCAACATTTTGTAGCCAGTAAGATTTATTAGCTATA  500

seq1  TATAGACATTTACGTTTTAAACATAAACATATAAATTAAGTAAATTAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACATTTACGTTTTAAACATAAACATATAAATTAAGTAAATTAAGT  550

seq1  ATTTTTATGTTTGTGTGTCACAAGAATTAAAGAAAAAGATGCCATTAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATGTTTGTGTGTCACAAGAATTAAAGAAAAAGATGCCATTAGAG  600

seq1  AAGGATTAAGAAGAGAATTATAGAGGGTGGAGGTAGGAGAGAAAGGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTAAGAAGAGAATTATAGAGGGTGGAGGTAGGAGAGAAAGGGAAA  650

seq1  ATAATGTAATTACATTTTAATTTTTAAAATTGCAAATAAAATAAGAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTAATTACATTTTAATTTTTAAAATTGCAAATAAAATAAGAAAGA  700

seq1  ATTCAAAAAGCAAGTATTTAGACTAGGATAGCACTGATTTTGCATAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAAAGCAAGTATTTAGACTAGGATAGCACTGATTTTGCATAACTG  750

seq1  AGACCCTATTTATTATTAAATGATTATGTGATATGAAGACACTTTATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTATTTATTATTAAATGATTATGTGATATGAAGACACTTTATTAA  800

seq1  AACTACAGCTTAAGTGCAATTACAATAAAATATCATCATAAAAGTTCATA  850
      ||||||||||||  |||| ||||||| |||||||||||||||||||||||
seq2  AACTACAGCTTAGTTGCATTTACAATTAAATATCATCATAAAAGTTCATA  850

seq1  TAATAAAAGATTAATAG-TGACATGGATAGAAAAGAATGCATA-CTCCAG  898
      ||  |||||| |||||| ||||||||||||||||||||||||| ||||| 
seq2  TATAAAAAGA-TAATAGTTGACATGGATAGAAAAGAATGCATACCTCCAA  899

seq1  AAAATCTAGTAAGGGACTTGAGCACCAGTTATCAATATGTCCAAGGCATA  948
      |||||||||||||||| |||||| ||||||||||||||||| ||||| ||
seq2  AAAATCTAGTAAGGGAATTGAGCCCCAGTTATCAATATGTCAAAGGC-TA  948

seq1  GCAGCTGCTATGATACAAACACCTCATGAGTAGCTATCAGCTCTCTGAAA  998
      |||||||||  |||||||||| ||||||||| |||||||||||||| |||
seq2  GCAGCTGCTTAGATACAAACA-CTCATGAGT-GCTATCAGCTCTCTAAAA  996

seq1  G-AAAGAAAAAGTGTAACCTCATTGTCG  1025
      | |||||||||| || |||||| |||||
seq2  GAAAAGAAAAAG-GT-ACCTCAATGTCG  1022