BAC Information

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BAC

Clone NameB6Ng01-150K16
Chromosome17 (Build37)
Map Location 81,620,528 - 81,800,871
singlet/doubletdoublet
Overlap geneLOC100043700, LOC100043704, Slc8a1
Upstream geneGemin6, Dhx57, Morn2, Sos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2
Downstream geneEG668832, LOC100043707, LOC625467, LOC668836, EG433141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150K16.bB6Ng01-150K16.g
ACCDH946689DH946690
length1,2191,083
definitionDH946689|Mus musculus domesticus DNA, BAC clone: B6Ng01-150K16, 5' end.DH946690|Mus musculus domesticus DNA, BAC clone: B6Ng01-150K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,799,633 - 81,800,871)(81,620,528 - 81,621,613)
sequence
gaattcacactgctgccaagctcataagaagaaatattaggctgcaggaa
agtgtctcttcattaccatgtcacggacacagtgtgaacaacagaatgac
ttcaggctcattggtatttttagaaaggaagacaaatacaattgtcactt
aatttaaacagtaaatcttacgtgtgggtataaaagaatgttggtatctg
tttgggatagagcatggtataaatatgaagtcacagcacttggcatttat
gtgcaataccagctggataccatctttgctcccagcacacagaccttaca
gtctgcctcttcacggggatgaaacataagctatatattacttgtttata
ctctgcttcattctaaaaattaaatccatgaaatgccctccatgatgtag
acacctttcccagcgcatgatcaccaaagatgctaaattggtgagtgacc
atattcaataaccttcatttagctcagcaaatataaatcctgtacgtcat
gcgcaggaaaaagatggctgatttgggctctattatttgtgatcagagag
ctgcattatgctcgtttccttctttccttctggagcacaggggcctctag
ggcatgggctctgataaattgcaagctattattaggttatcatagtaaaa
tatcatgggtcgagacaaacagcaagactctctgcagatccaaagagaaa
tgatccccagtagggtctgtagccaggctcagcagaggactaattatagc
ctgtcattcctgagctgtatttacaaaacaacaaaaagcccacagatgta
caaaatggtcatgaaaatgtccttcttctgaggaatatgtgtgttgaggc
ttcagatggccgaaactggcaaagaaagcccccagaggtagcttgtttgt
caagtggggatctgagggtaaacagctgggtgggagtggacggtgctatg
tcaacagttgctatggccttgcgcaagcagtccaccggaggtcttacctg
ccccacactctgtgctcagagttctacatttaggcagaagagagaaacgg
atgcagagaagttgatatcagaaagttttctaaattcagtatgtatctgg
gtctattattgatttatttggccaaaaaagcataaaaatctgtaagattg
ttgtaaggttaaaataactaggaacctaccgatctgtgaaagtgtgcttc
tctcaactggaaaaactca
gaattccaaactctgcctaacatgggaaggaaggacctgactttctacct
cactcccatgtgcatcttccctcttgagcatccagaatgttctatctata
tactcttgcttcactggagtttgaaggctgctaggtatatttcttagtag
aaattaatgtgtaaggtgaacacaagggttgacatctaactaagaaagat
attctatagtgcctaattacagaaaactaatacgcaaacatacaaaaatc
aaaagagagtatggtaacatggttagaaaagtcaccagtgcttaaacctt
aggatttgcacatgcgtattaggtcttccactcagctctttggtctgctc
ttcacttacaattgttctgcttcaagtgtttactccactctttagctctg
gtgttttggtaagatgattcaactgaaagttaagacattgcaaaataact
agaactgcaatcgactggggatgctgccagctctgagtatcactattaag
gttataggtttcaacacagataggatgaaatgctgatggtgtctaaatac
tccagtgggaaatgttattaaaagctttttggaaagccccctcacacacc
gacacatagtatgttcttgttgctcttaatgacaaaattccaatagggtt
atttattgtactagaatattcttgtagatttgagattgtcttttcctctg
gagtcttggaaaaaaaaggagaaatagcactgctattttgctattaatgg
ggttcaagtagaaaaataaaaacaattcacagttttaacataagaatata
attataaaataaattgaaaatgcatttattattttatgggttacattggg
ttctagaagatgcactatgtccaatgataagattatttagaaaggttcaa
ctgaaggatttttctcaactcctaacacaatttcaaatgtaaatctaggc
agaggaaatttgcaggtatagatcatggagaaattagagtccaaatattt
ttatcttgtggacaagcaaaaaaaaaaaaagtatggactgaaattagaaa
gaagaaaaacgaattagattattgtttattgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_81799633_81800871
seq2: B6Ng01-150K16.b_44_1262 (reverse)

seq1  TGAGTTTTTCATGTAG-GAGAGCCACATTATTTCACAGATCTGTTTAGGT  49
      ||||||||||  || | ||||  ||||   ||||||||||| |  |||||
seq2  TGAGTTTTTCCAGTTGAGAGAAGCACA--CTTTCACAGATCGG--TAGGT  46

seq1  TCCCTAGTTATTTATAGACCTTATCAAACAATCTTACAGATTTTTATGCT  99
      | ||||||||||| || ||||||   ||||||||||||||||||||||||
seq2  T-CCTAGTTATTT-TA-ACCTTA--CAACAATCTTACAGATTTTTATGCT  91

seq1  TTTTTTTGCCAATAAAAATTCCATAATAGACCCAGGATAACAATACTTGA  149
      |||||   | ||||||   || |||||||||||| ||||   |||| |||
seq2  TTTTTGGCCAAATAAA---TCAATAATAGACCCA-GATA--CATAC-TGA  134

seq1  TTTTAGAAAACTTTCTGATATCAACTTCTTCTGCATCCGTTTCTCTCTTC  199
       ||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTTAGAAAACTTTCTGATATCAACTTC-TCTGCATCCGTTTCTCTCTTC  183

seq1  TGCCTAAATGTAGAACTCTTGAAGCACAGAGTGTGGGGCAGGTAAGACCT  249
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  TGCCTAAATGTAGAACTCT--GAGCACAGAGTGTGGGGCAGGTAAGACCT  231

seq1  CCGGTGGACTGCTTGCGCAAGGCCATAGCAACTGTTGACATAGCAACCGT  299
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCGGTGGACTGCTTGCGCAAGGCCATAGCAACTGTTGACATAGC-ACCGT  280

seq1  CCACTCCCACCCAGCTGTTTTACCCTCAGATCCCCACTTGACAAACAAGC  349
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCACTCCCACCCAGCTG-TTTACCCTCAGATCCCCACTTGACAAACAAGC  329

seq1  TACCTCTGGGGGCTTTCTTTGCCAGTTTCGGCCATCTGAAGCCTCAACAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTGGGGGCTTTCTTTGCCAGTTTCGGCCATCTGAAGCCTCAACAC  379

seq1  ACATATTCCTCAGAAGAAGGACATTTTCATGACCATTTTGTACATCTGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTCCTCAGAAGAAGGACATTTTCATGACCATTTTGTACATCTGTG  429

seq1  GGCTTTTTGTTGTTTTGTAAATACAGCTCAGGAATGACAGGCTATAATTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTTGTTGTTTTGTAAATACAGCTCAGGAATGACAGGCTATAATTA  479

seq1  GTCCTCTGCTGAGCCTGGCTACAGACCCTACTGGGGATCATTTCTCTTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGCTGAGCCTGGCTACAGACCCTACTGGGGATCATTTCTCTTTG  529

seq1  GATCTGCAGAGAGTCTTGCTGTTTGTCTCGACCCATGATATTTTACTATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCAGAGAGTCTTGCTGTTTGTCTCGACCCATGATATTTTACTATG  579

seq1  ATAACCTAATAATAGCTTGCAATTTATCAGAGCCCATGCCCTAGAGGCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTAATAATAGCTTGCAATTTATCAGAGCCCATGCCCTAGAGGCCC  629

seq1  CTGTGCTCCAGAAGGAAAGAAGGAAACGAGCATAATGCAGCTCTCTGATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTCCAGAAGGAAAGAAGGAAACGAGCATAATGCAGCTCTCTGATC  679

seq1  ACAAATAATAGAGCCCAAATCAGCCATCTTTTTCCTGCGCATGACGTACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAATAGAGCCCAAATCAGCCATCTTTTTCCTGCGCATGACGTACA  729

seq1  GGATTTATATTTGCTGAGCTAAATGAAGGTTATTGAATATGGTCACTCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTATATTTGCTGAGCTAAATGAAGGTTATTGAATATGGTCACTCAC  779

seq1  CAATTTAGCATCTTTGGTGATCATGCGCTGGGAAAGGTGTCTACATCATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAGCATCTTTGGTGATCATGCGCTGGGAAAGGTGTCTACATCATG  829

seq1  GAGGGCATTTCATGGATTTAATTTTTAGAATGAAGCAGAGTATAAACAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCATTTCATGGATTTAATTTTTAGAATGAAGCAGAGTATAAACAAG  879

seq1  TAATATATAGCTTATGTTTCATCCCCGTGAAGAGGCAGACTGTAAGGTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATAGCTTATGTTTCATCCCCGTGAAGAGGCAGACTGTAAGGTCT  929

seq1  GTGTGCTGGGAGCAAAGATGGTATCCAGCTGGTATTGCACATAAATGCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTGGGAGCAAAGATGGTATCCAGCTGGTATTGCACATAAATGCCA  979

seq1  AGTGCTGTGACTTCATATTTATACCATGCTCTATCCCAAACAGATACCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGTGACTTCATATTTATACCATGCTCTATCCCAAACAGATACCAA  1029

seq1  CATTCTTTTATACCCACACGTAAGATTTACTGTTTAAATTAAGTGACAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTTATACCCACACGTAAGATTTACTGTTTAAATTAAGTGACAAT  1079

seq1  TGTATTTGTCTTCCTTTCTAAAAATACCAATGAGCCTGAAGTCATTCTGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGTCTTCCTTTCTAAAAATACCAATGAGCCTGAAGTCATTCTGT  1129

seq1  TGTTCACACTGTGTCCGTGACATGGTAATGAAGAGACACTTTCCTGCAGC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACACTGTGTCCGTGACATGGTAATGAAGAGACACTTTCCTGCAGC  1179

seq1  CTAATATTTCTTCTTATGAGCTTGGCAGCAGTGTGAATTC  1239
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATTTCTTCTTATGAGCTTGGCAGCAGTGTGAATTC  1219

seq1: chr17_81620528_81621613
seq2: B6Ng01-150K16.g_68_1150

seq1  GAATTCCAAACTCTGCCTAACATGGGAAGGAAGGACCTGACTTTCTACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACTCTGCCTAACATGGGAAGGAAGGACCTGACTTTCTACCT  50

seq1  CACTCCCATGTGCATCTTCCCTCTTGAGCATCCAGAATGTTCTATCTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCATGTGCATCTTCCCTCTTGAGCATCCAGAATGTTCTATCTATA  100

seq1  TACTCTTGCTTCACTGGAGTTTGAAGGCTGCTAGGTATATTTCTTAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTGCTTCACTGGAGTTTGAAGGCTGCTAGGTATATTTCTTAGTAG  150

seq1  AAATTAATGTGTAAGGTGAACACAAGGGTTGACATCTAACTAAGAAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATGTGTAAGGTGAACACAAGGGTTGACATCTAACTAAGAAAGAT  200

seq1  ATTCTATAGTGCCTAATTACAGAAAACTAATACGCAAACATACAAAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATAGTGCCTAATTACAGAAAACTAATACGCAAACATACAAAAATC  250

seq1  AAAAGAGAGTATGGTAACATGGTTAGAAAAGTCACCAGTGCTTAAACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAGTATGGTAACATGGTTAGAAAAGTCACCAGTGCTTAAACCTT  300

seq1  AGGATTTGCACATGCGTATTAGGTCTTCCACTCAGCTCTTTGGTCTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTGCACATGCGTATTAGGTCTTCCACTCAGCTCTTTGGTCTGCTC  350

seq1  TTCACTTACAATTGTTCTGCTTCAAGTGTTTACTCCACTCTTTAGCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTACAATTGTTCTGCTTCAAGTGTTTACTCCACTCTTTAGCTCTG  400

seq1  GTGTTTTGGTAAGATGATTCAACTGAAAGTTAAGACATTGCAAAATAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTGGTAAGATGATTCAACTGAAAGTTAAGACATTGCAAAATAACT  450

seq1  AGAACTGCAATCGACTGGGGATGCTGCCAGCTCTGAGTATCACTATTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGCAATCGACTGGGGATGCTGCCAGCTCTGAGTATCACTATTAAG  500

seq1  GTTATAGGTTTCAACACAGATAGGATGAAATGCTGATGGTGTCTAAATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGGTTTCAACACAGATAGGATGAAATGCTGATGGTGTCTAAATAC  550

seq1  TCCAGTGGGAAATGTTATTAAAAGCTTTTTGGAAAGCCCCCTCACACACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGGGAAATGTTATTAAAAGCTTTTTGGAAAGCCCCCTCACACACC  600

seq1  GACACATAGTATGTTCTTGTTGCTCTTAATGACAAAATTCCAATAGGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATAGTATGTTCTTGTTGCTCTTAATGACAAAATTCCAATAGGGTT  650

seq1  ATTTATTGTACTAGAATATTCTTGTAGATTTGAGATTGTCTTTTCCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTGTACTAGAATATTCTTGTAGATTTGAGATTGTCTTTTCCTCTG  700

seq1  GAGTCTTGGAAAAAAAAGGAGAAATAGCACTGCTATTTTGCTATTAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTGGAAAAAAAAGGAGAAATAGCACTGCTATTTTGCTATTAATGG  750

seq1  GGTTCAAGTAGAAAAATAAAAACAATTCACAGTTTTAACATAAGAATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAAGTAGAAAAATAAAAACAATTCACAGTTTTAACATAAGAATATA  800

seq1  ATTATAAAATAAATTGAAAATGCATTTATTATTTTATGGGTTACATT-GG  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATTATAAAATAAATTGAAAATGCATTTATTATTTTATGGGTTACATTGGG  850

seq1  TTCTAGAAGATGCACTATGTCCAATGATAAGATTATTTAGAAAGGTTCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAAGATGCACTATGTCCAATGATAAGATTATTTAGAAAGGTTCAA  900

seq1  CTGAAGGATTTTTCTCAACTCCTAACACAATTTCAAAATGTAAATCTAGG  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGAAGGATTTTTCTCAACTCCTAACACAATTTC-AAATGTAAATCTAGG  949

seq1  CAGAGGAAATTTGCAAGGTATAGATCATGGAGAAAATTAGAGTCCAAATA  999
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  CAGAGGAAATTTGC-AGGTATAGATCATGGAG-AAATTAGAGTCCAAATA  997

seq1  -TTTTATCTTGTGACAAAGCAAAAAAAAAAAAAAAGTAT-GACTGAAAAT  1047
       ||||||||||||   ||||  ||||||||||||||||| ||||| ||||
seq2  TTTTTATCTTGTGGACAAGC--AAAAAAAAAAAAAGTATGGACTG-AAAT  1044

seq1  TAGAAAGAAGAAAACAGAATTAGATTATTGTTTATTGTT  1086
      ||||||||||||||  |||||||||||||||||||||||
seq2  TAGAAAGAAGAAAAACGAATTAGATTATTGTTTATTGTT  1083