BAC Information

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BAC

Clone NameB6Ng01-150M03
Chromosome17 (Build37)
Map Location 56,981,255 - 57,147,254
singlet/doubletdoublet
Overlap geneAcsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1
Upstream geneEmr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2
Downstream geneKhsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916, Cntnap5c, LOC674419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150M03.bB6Ng01-150M03.g
ACCDH946754DH946755
length971617
definitionDH946754|Mus musculus domesticus DNA, BAC clone: B6Ng01-150M03, 5' end.DH946755|Mus musculus domesticus DNA, BAC clone: B6Ng01-150M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,981,255 - 56,981,961)(57,146,639 - 57,147,254)
sequence
gaattctgtgtccttgtctggttactacacaggaccatctatcacaaaga
tgaccaagtcctagacttcctagatggaacttcatgtttaatcatcaagc
aagaactaatcttggctgtaactctgatggttctcatagaattgggcatg
gctgacacaagaatcggggttgcttcacttccttggtgttacaaaacaaa
tattatgggggctggtgagatggctcagtggttaagagcgctgactgctc
ttcccaaggtcctgagttcaaatcccagcaaccacatggtggctcacaac
catccataacgaaatctgatgctctcttctggactgtctgaagacagcta
ccgtgtacttacatataataacaaacaaacaaacaaacaaacaaaaacca
aacattatgacagtctaagaaaggccgtagatactaatgtagagagacta
gaaaaagcaatctctcacctccaagattctctgggctccctggcagaggt
agtactctaaaataggagggggcgggatttcctgtttatgcaataaagag
ggttaagtgcagctctcagagtgccggttttactttgactgctctagagt
ggtcaaagaatcaattgccaaagttagagagggcctggccaagagaaaaa
gagaaagagaacacacacacatgcacacatacaacaagtacatcggactt
acacatgtacacacatacacacacacacacacacacacacacacacacac
agacacaggtacaccagacacccatacacacatataggtacaccagacat
acatgtacacacaagtacatcagacatacatatacatacatgcataccca
ggtacaccaaactcacacatatacaaacaggtacaccagacacacaaatg
tacacacacacagtcacactcacaggtacaccagacacacatatgtacac
acatgtacacaagcacagggg
gaattcaaccgcaagcttagggaggaggcgcgccggaagaagtatggcat
tgtcctaaaggagtttcggcctgaggaccagccttggctactccgtgtca
atggcaaatcaggacggaagtaagtgatgctaatggtgggaggggccagc
ctgtgtccctcccacatgcatactttggaggcatcttctttgagtctgta
gccaacaggatggtggtcccagtaccacctccttgataaagtttaatctt
ggaggtaaatcaactagatactgttggtctggctcagcagcctgagtgtg
gcctggagatagggccctgaccccatgggcgaggatactccattgcaaag
aaggtggagtctgatggagccagtgacgagagtgctctatgcatagttat
tcagtgaaccaatagctggagcctacacagtgtaaggccctcagtagcca
tgggggattataggctgggagcaggatacacagtgcaacatggcccagaa
tctggtagcagatggtggccacaaggtggcagggtgatgttttgtgctag
ggagatggtagcacatgcccttctgtcctaatcattcctagaatagccca
tatgggaactgtagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_56981255_56981961
seq2: B6Ng01-150M03.b_47_753

seq1  GAATTCTGTGTCCTTGTCTGGTTACTACACAGGACCATCTATCACAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTCCTTGTCTGGTTACTACACAGGACCATCTATCACAAAGA  50

seq1  TGACCAAGTCCTAGACTTCCTAGATGGAACTTCATGTTTAATCATCAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAGTCCTAGACTTCCTAGATGGAACTTCATGTTTAATCATCAAGC  100

seq1  AAGAACTAATCTTGGCTGTAACTCTGATGGTTCTCATAGAATTGGGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTAATCTTGGCTGTAACTCTGATGGTTCTCATAGAATTGGGCATG  150

seq1  GCTGACACAAGAATCGGGGTTGCTTCACTTCCTTGGTGTTACAAAACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACACAAGAATCGGGGTTGCTTCACTTCCTTGGTGTTACAAAACAAA  200

seq1  TATTATGGGGGCTGGTGAGATGGCTCAGTGGTTAAGAGCGCTGACTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGGGGGCTGGTGAGATGGCTCAGTGGTTAAGAGCGCTGACTGCTC  250

seq1  TTCCCAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAAC  300

seq1  CATCCATAACGAAATCTGATGCTCTCTTCTGGACTGTCTGAAGACAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATAACGAAATCTGATGCTCTCTTCTGGACTGTCTGAAGACAGCTA  350

seq1  CCGTGTACTTACATATAATAACAAACAAACAAACAAACAAACAAAAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTACTTACATATAATAACAAACAAACAAACAAACAAACAAAAACCA  400

seq1  AACATTATGACAGTCTAAGAAAGGCCGTAGATACTAATGTAGAGAGACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATGACAGTCTAAGAAAGGCCGTAGATACTAATGTAGAGAGACTA  450

seq1  GAAAAAGCAATCTCTCACCTCCAAGATTCTCTGGGCTCCCTGGCAGAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGCAATCTCTCACCTCCAAGATTCTCTGGGCTCCCTGGCAGAGGT  500

seq1  AGTACTCTAAAATAGGAGGGGGCGGGATTTCCTGTTTATGCAATAAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTCTAAAATAGGAGGGGGCGGGATTTCCTGTTTATGCAATAAAGAG  550

seq1  GGTTAAGTGCAGCTCTCAGAGTGCCGGTTTTACTTTGACTGCTCTAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGTGCAGCTCTCAGAGTGCCGGTTTTACTTTGACTGCTCTAGAGT  600

seq1  GGTCAAAGAATCAATTGCCAAAGTTAGAGAGGGCCTGGCCAAGAGAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAAGAATCAATTGCCAAAGTTAGAGAGGGCCTGGCCAAGAGAAAAA  650

seq1  GAGAAAGAGAACACACACACATGCACACATACAACAAGTACATCGGACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAGAACACACACACATGCACACATACAACAAGTACATCGGACTT  700

seq1  ACACATG  707
      |||||||
seq2  ACACATG  707

seq1: chr17_57146639_57147254
seq2: B6Ng01-150M03.g_67_683 (reverse)

seq1  TCTCTACAGTTCCCATTTGGGCTCTTCTAGGAATGATTAGGACAGAAGGG  50
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  TCTCTACAGTTCCCATATGGGCTATTCTAGGAATGATTAGGACAGAAGGG  50

seq1  CATGTGCTACCATCTCCCTAGCAC-AAACATCACCCTGCCACCTTGTGGC  99
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CATGTGCTACCATCTCCCTAGCACAAAACATCACCCTGCCACCTTGTGGC  100

seq1  CACCATCTGCTACCAGATTCTGGGCCATGTTGCACTGTGTATCCTGCTCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCTGCTACCAGATTCTGGGCCATGTTGCACTGTGTATCCTGCTCC  150

seq1  CAGCCTATAATCCCCCATGGCTACTGAGGGCCTTACACTGTGTAGGCTCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTATAATCCCCCATGGCTACTGAGGGCCTTACACTGTGTAGGCTCC  200

seq1  AGCTATTGGTTCACTGAATAACTATGCATAGAGCACTCTCGTCACTGGCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTGGTTCACTGAATAACTATGCATAGAGCACTCTCGTCACTGGCT  250

seq1  CCATCAGACTCCACCTTCTTTGCAATGGAGTATCCTCGCCCATGGGGTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGACTCCACCTTCTTTGCAATGGAGTATCCTCGCCCATGGGGTCA  300

seq1  GGGCCCTATCTCCAGGCCACACTCAGGCTGCTGAGCCAGACCAACAGTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTATCTCCAGGCCACACTCAGGCTGCTGAGCCAGACCAACAGTAT  350

seq1  CTAGTTGATTTACCTCCAAGATTAAACTTTATCAAGGAGGTGGTACTGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGATTTACCTCCAAGATTAAACTTTATCAAGGAGGTGGTACTGGG  400

seq1  ACCACCATCCTGTTGGCTACAGACTCAAAGAAGATGCCTCCAAAGTATGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCATCCTGTTGGCTACAGACTCAAAGAAGATGCCTCCAAAGTATGC  450

seq1  ATGTGGGAGGGACACAGGCTGGCCCCTCCCACCATTAGCATCACTTACTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGAGGGACACAGGCTGGCCCCTCCCACCATTAGCATCACTTACTT  500

seq1  CCGTCCTGATTTGCCATTGACACGGAGTAGCCAAGGCTGGTCCTCAGGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCCTGATTTGCCATTGACACGGAGTAGCCAAGGCTGGTCCTCAGGCC  550

seq1  GAAACTCCTTTAGGACAATGCCATACTTCTTCCGGCGCGCCTCCTCCCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCCTTTAGGACAATGCCATACTTCTTCCGGCGCGCCTCCTCCCTA  600

seq1  AGCTTGCGGTTGAATTC  616
      |||||||||||||||||
seq2  AGCTTGCGGTTGAATTC  617