BAC Information

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BAC

Clone NameB6Ng01-151L20
Chromosome17 (Build37)
Map Location 42,053,922 - 42,054,456
singlet/doubletsinglet
Overlap genenone
Upstream geneCenpq, Mut, Ldha-ps3, LOC627577
Downstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151L20.bB6Ng01-151L20.g
ACCDH947483DH947484
length9601,093
definitionDH947483|Mus musculus domesticus DNA, BAC clone: B6Ng01-151L20, 5' end.DH947484|Mus musculus domesticus DNA, BAC clone: B6Ng01-151L20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacttaaattctgtagaaatttgatgacacagggaatgggaatac
tagtgaggttgggtagttagtggagccccctctcagaagcaaaggggggg
gggttatggggtaacaaaatcttagagggatctaggaaggggaaaacatt
tagaaagtaagcaaataaaatgaccaattcaatttttaaaatgaaagaga
gactgtaggaagagccatccagtgactggcacaaattagtatctacctca
tttgtaggcaccaaatcctgacactattactgatgctatattgtgcttgt
agacagaaacctagcatggctgtctgagaagtctatcagcaactgactga
gatagatgcaatatacttactgccaaatatttgactgaggtctttgactc
ctatgaaagagttaggagaaggattgaaggagctgaaaagaatggcatcc
ccataggaagaataagaggtcaactatcccagaacccgggaattctcaga
ctctaagccaatatccaaagaggatacatgggctggtcagaatcccctgg
gacatatgtaacacaggactgacttttctaatctcagtggtaaaggatgt
gcctaatcctgtaaagcttgatgtccagggaagcaggatgtctggaggag
tgggatgagggaggactcttataaatttgaaggagaggtgtatggcataa
agaatttctgggaggtaggacctcgaagatttatcgtttgggatgtaaaa
taaataaagtaattttatttagaaaataataaaaatttcatgcttccaaa
taatttgaaatggcataaacatactaacaaaaaaggaaagcttttgtagc
ttgagggatggacaatcatttagacctactcttgcaaaaaagtgaagttt
gcttacatgacatacatccgtcagttaaagttgcttgtaattcttcctcc
ggggtactga
gaattcctgatctttctaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggatttggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctattttt
taggtgatatgggactgtttagaaggtcaacttgatcctgattcaccttt
ggtacctggtatctgtccagaaatttgtctatttcgtccaggttttccag
tattgttgagtatagccttttgtagaaggatctgatggtgttttggattt
cttcaggatctgttgttatgtctcccttttcatttctaattttgttaatt
aggattttgtccctgtgccctttagtgagtctagctaagggtttatctat
cttgttgattttctcaaagaaccaattcctcgtttggttaattctttgaa
tagttcttcttgtttccacttggttgatttcaccccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttcttccttttttctagagct
ttagatgtgttgtcaagctgctagtatgtgctctctcccgtttcttcttg
gaggcactctgagctatgagtttctctcttagaatgctttcattgtgtcc
aatagttgggtacgttgtgctcatttcacattaactctaaaaagccttta
attcctttcttattccttccttgaccatgtatattgagaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_42053922_42054456
seq2: B6Ng01-151L20.g_637_1161 (reverse)

seq1  CTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAA  50
      ||||||||||| ||| | |||||||||||||||| ||||||| |||||||
seq2  CTCTTCTCAAT-ATA-CATGGTCAAGGAAGGAAT-AAGAAAGGAATTAAA  47

seq1  GACTTTTTAGAGTTTAATG-AAAATGAAGCCACAACGTACCCAAACCTAT  99
      | |||||||||| ||||||  ||||||   ||||||||||||||  ||||
seq2  GGCTTTTTAGAG-TTAATGTGAAATGA--GCACAACGTACCCAA--CTAT  92

seq1  GGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCC  149
       |||||||||||||||| ||||||||| |||||||||||||| |||||||
seq2  TGGACACAATGAAAGCA-TTCTAAGAGAGAAACTCATAGCTCAGAGTGCC  141

seq1  TCCAAGAAGAAACGGGAGACAGCACATACTAGCAGCTTGACAACACATCT  199
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCT  191

seq1  AAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGC  249
       |||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  -AAAGCTCTAG-AAAAAAGGAAG-AAATTCACCCAAGAGGAGTAGACGGC  238

seq1  AGGAAATAATCAAACTCA-GGGGTGAAATCAACCAAGTGGAAACAAGAAG  298
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGGAAATAATCAAACTCAGGGGGTGAAATCAACCAAGTGGAAACAAGAAG  288

seq1  AACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCA  348
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AACTATTCAAAGAATTAACCAAACGAGGAATTGGTTCTTTGAGAAAATCA  338

seq1  ACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAA  388

seq1  ATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCC  448
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATCCTAATTAACAAAATTAGAAATGAAAAGGGAGACATAACAACAGATCC  438

seq1  TGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAA  488

seq1  CAAAACTGGAAAACCTGGACGAAATGGACAAATTTCT  535
      ||| ||||||||||||||||||||| |||||||||||
seq2  CAATACTGGAAAACCTGGACGAAATAGACAAATTTCT  525