BAC Information

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BAC

Clone NameB6Ng01-152L24
Chromosome17 (Build37)
Map Location 80,076,800 - 80,215,845
singlet/doubletdoublet
Overlap geneAW061290, Cyp1b1, EG668821
Upstream geneStrn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964
Downstream geneArl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152L24.bB6Ng01-152L24.g
ACCDH948247DH948248
length1,0131,091
definitionDH948247|Mus musculus domesticus DNA, BAC clone: B6Ng01-152L24, 5' end.DH948248|Mus musculus domesticus DNA, BAC clone: B6Ng01-152L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,076,800 - 80,077,706)(80,214,747 - 80,215,845)
sequence
gaattcagagccccagcaccacagtcaacataacactcagcacgccatgc
ctggaatcccagcactgggtgggagaaatgagtatgctcagggctttcta
gctagccatctagccggtgcgcaagtaccaggtacagtgagacactgccc
taaaataaacaaggtaaagagtgatagaggaagacacccaagatcagcct
ctggcctacacacacacacacacacacacacacacacacacacaccagac
ttatgcacacagataataaacatatatacatgcataagtataacaaacat
atacatatatacacatataacaaacatatacatgtatagataaagcaaat
atatacaaatgcacatataaaacacacatgcatgcttacaaaggaaaaag
ttgatcagtcaggaaaataagaaaactatgagactgcccagttaaaaaca
catagatatctatagaacatttcatcctaaacaaaaagaatataccttct
tttcagcaactcacagtaccttctccaaaactaattatatagtcacaaaa
gaggcctcaacagataaaagaagatgaaataaccccatgcatcctatcag
atcaccatggactaaggctgatcttcaatagcaacaaaaacaacagaaag
cccacatacacatggaagctggacaacaccctactcaatgataacttggt
caaggaaagcagtctaagaggaaaactcatagctttgagtgcctccaaaa
agaaactggagagagcatacactagcagcttgacagcacacctgaaagct
ctagaacaaaaagaagcaagcacacccaagaggagtagacagcaggaaat
aatcaaactcagagctgaaatcaatcaagtagaaacagaactatacaaag
aatcaagaaaaccaggaactgggttctttgagaaaatcaacagatagaca
aacccttagccagactaaccagagggcacagggacagtatccaaattaca
aatcagaaatgaa
gaattcactctgtagaccaggctggccttgaactcagaaatcctcctgcc
tctgcctcccaaatgctgggattaaaagcatgtgccaccactgcccagct
tcattttgtttcttgttgatataatattttacagggcaatcattgatgtg
taacaaatttaatatcctttttataccacttactgcattttaaaatataa
aaacattcctcatgtttatagatttcagaattaacactaatatagtcatt
aataatgctattaacatttctacttaaaagggccttttcttattggttac
agtttctacatgttctttgcttttagaaacaaaacactgggcctctaaat
atctattaggtgtgaatttctaagacttttttttttaggccaaatgaatt
tttaaaaatgaatttttgatgtattgctctgatattcattacaagaactt
tagaattttatgcagttctcaatatagcaatttagtcacaattttatctc
ttttaggttctatatttttcctctgtgatctagtcatgatttcaattaaa
atcatacaggcctgttgtgcacaaaaccctgagtttatccatccacattg
gaatgtccaccccagtgctgaccacagcaagatttagatcatttgtttcc
tgcagggtctcccacagctcggttgggctaggaactctgtgctgatgagg
aggaccttgtgttcctggttctcctgagagctgggagtagaggcttgtac
catcatgcctggcttacgcagaggtgggtgggggtctagtccagagctct
atacatgctgggcaagtattctcctgagctacatgcccagcccacagcaa
gattttctgaaggtccgattgtttctcttgctcacctgagttttgggggt
ctctttggaaccacgtgttcccacaaggataaaatgctcagttcaccttt
catatccttcctttcatatcctcctttcctttctcagactaaacaaatac
ttcttggatgtaggagtaccagcttactatacctttaataaccatattca
tgttggaaaaaaagaacattggttgtttcaccaggggatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_80076800_80077706
seq2: B6Ng01-152L24.b_37_943

seq1  GAATTCAGAGCCCCAGCACCACAGTCAACATAACACTCAGCACGCCATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCCCCAGCACCACAGTCAACATAACACTCAGCACGCCATGC  50

seq1  CTGGAATCCCAGCACTGGGTGGGAGAAATGAGTATGCTCAGGGCTTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATCCCAGCACTGGGTGGGAGAAATGAGTATGCTCAGGGCTTTCTA  100

seq1  GCTAGCCATCTAGCCGGTGCGCAAGTACCAGGTACAGTGAGACACTGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCATCTAGCCGGTGCGCAAGTACCAGGTACAGTGAGACACTGCCC  150

seq1  TAAAATAAACAAGGTAAAGAGTGATAGAGGAAGACACCCAAGATCAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAACAAGGTAAAGAGTGATAGAGGAAGACACCCAAGATCAGCCT  200

seq1  CTGGCCTACACACACACACACACACACACACACACACACACACACCAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTACACACACACACACACACACACACACACACACACACACCAGAC  250

seq1  TTATGCACACAGATAATAAACATATATACATGCATAAGTATAACAAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCACACAGATAATAAACATATATACATGCATAAGTATAACAAACAT  300

seq1  ATACATATATACACATATAACAAACATATACATGTATAGATAAAGCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATATACACATATAACAAACATATACATGTATAGATAAAGCAAAT  350

seq1  ATATACAAATGCACATATAAAACACACATGCATGCTTACAAAGGAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAAATGCACATATAAAACACACATGCATGCTTACAAAGGAAAAAG  400

seq1  TTGATCAGTCAGGAAAATAAGAAAACTATGAGACTGCCCAGTTAAAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCAGTCAGGAAAATAAGAAAACTATGAGACTGCCCAGTTAAAAACA  450

seq1  CATAGATATCTATAGAACATTTCATCCTAAACAAAAAGAATATACCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATATCTATAGAACATTTCATCCTAAACAAAAAGAATATACCTTCT  500

seq1  TTTCAGCAACTCACAGTACCTTCTCCAAAACTAATTATATAGTCACAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCAACTCACAGTACCTTCTCCAAAACTAATTATATAGTCACAAAA  550

seq1  GAGGCCTCAACAGATAAAAGAAGATGAAATAACCCCATGCATCCTATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTCAACAGATAAAAGAAGATGAAATAACCCCATGCATCCTATCAG  600

seq1  ATCACCATGGACTAAGGCTGATCTTCAATAGCAACAAAAACAACAGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCATGGACTAAGGCTGATCTTCAATAGCAACAAAAACAACAGAAAG  650

seq1  CCCACATACACATGGAAGCTGGACAACACCCTACTCAATGATAACTTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATACACATGGAAGCTGGACAACACCCTACTCAATGATAACTTGGT  700

seq1  CAAGGAAAGCAGTCTAAGAGGAAAACTCATAGCTTTGAGTGCCTCCAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAAGCAGTCTAAGAGGAAAACTCATAGCTTTGAGTGCCTCCAAAA  750

seq1  AGAAACTGGAGAGAGCATACACTAGCAGCTTGACAGCACACCTGAAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTGGAGAGAGCATACACTAGCAGCTTGACAGCACACCTGAAAGCT  800

seq1  CTAGAACAAAAAGAAGCAAGCACACCCAAGAGGAGTAGACAGCAGGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACAAAAAGAAGCAAGCACACCCAAGAGGAGTAGACAGCAGGAAAT  850

seq1  AATCAAACTCAGAGCTGAAATCAATCAAGTAGAAACAGAACTATACAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACTCAGAGCTGAAATCAATCAAGTAGAAACAGAACTATACAAAG  900

seq1  AATCAAG  907
      |||||||
seq2  AATCAAG  907

seq1: chr17_80214747_80215845
seq2: B6Ng01-152L24.g_69_1159 (reverse)

seq1  ACATCCCCT-GTG-AACAACCACATGTCTTTTTTTTTTCCAACATGAATA  48
      ||||||||| ||| |||||||| |||  || |||||||||||||||||||
seq2  ACATCCCCTGGTGAAACAACCA-ATG--TTCTTTTTTTCCAACATGAATA  47

seq1  T-GTTATTAAAATGTATTAGGTTAGCTGGTACTCTTACATCTCAGGAGTT  97
      | |||||| ||| ||||   || ||||||||||| |||||| || ||  |
seq2  TGGTTATT-AAAGGTAT--AGTAAGCTGGTACTCCTACATC-CAAGAAGT  93

seq1  ATTTGTTTTAGTTCTGAGAAAGGAAAGGAAGGATATGAAAGGAAGGATAT  147
      ||||| ||||| |||||||||||||||| |||||||||||||||||||||
seq2  ATTTG-TTTAG-TCTGAGAAAGGAAAGG-AGGATATGAAAGGAAGGATAT  140

seq1  GAAAGGTGAACTGAGCATTTTTATCCTTTGTGGGAACACGTGGTTCCAAA  197
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  GAAAGGTGAACTGAGCA-TTTTATCC-TTGTGGGAACACGTGGTTCCAAA  188

seq1  GAGACCCCCAAAACTCAGGTGAGCAAGAGAAACAATCGGACCTTCAG-AA  246
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGACCCCCAAAACTCAGGTGAGCAAGAGAAACAATCGGACCTTCAGAAA  238

seq1  ATCTTGCTGTGGGCTGGGCATGTAGCTCAGGAGAATACTTGCCCAGCATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCTGTGGGCTGGGCATGTAGCTCAGGAGAATACTTGCCCAGCATG  288

seq1  TATAGAGCTCTGGACTAGACCCCCACCCACCTCTGCGTAAGCCAGGCATG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGCTCTGGACTAGACCCCCACCCACCTCTGCGTAAGCCAGGCATG  338

seq1  ATGGTACAAGCCTCTACTCCCAGCTCTCAGGAGAACCAGGAACACAAGGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTACAAGCCTCTACTCCCAGCTCTCAGGAGAACCAGGAACACAAGGT  388

seq1  CCTCCTCATCAGCACAGAGTTCCTAGCCCAACCGAGCTGTGGGAGACCCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCATCAGCACAGAGTTCCTAGCCCAACCGAGCTGTGGGAGACCCT  438

seq1  GCAGGAAACAAATGATCTAAATCTTGCTGTGGTCAGCACTGGGGTGGACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAACAAATGATCTAAATCTTGCTGTGGTCAGCACTGGGGTGGACA  488

seq1  TTCCAATGTGGATGGATAAACTCAGGGTTTTGTGCACAACAGGCCTGTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATGTGGATGGATAAACTCAGGGTTTTGTGCACAACAGGCCTGTAT  538

seq1  GATTTTAATTGAAATCATGACTAGATCACAGAGGAAAAATATAGAACCTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAATTGAAATCATGACTAGATCACAGAGGAAAAATATAGAACCTA  588

seq1  AAAGAGATAAAATTGTGACTAAATTGCTATATTGAGAACTGCATAAAATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATAAAATTGTGACTAAATTGCTATATTGAGAACTGCATAAAATT  638

seq1  CTAAAGTTCTTGTAATGAATATCAGAGCAATACATCAAAAATTCATTTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTTCTTGTAATGAATATCAGAGCAATACATCAAAAATTCATTTTT  688

seq1  AAAAATTCATTTGGCCTAAAAAAAAAAGTCTTAGAAATTCACACCTAATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCATTTGGCCTAAAAAAAAAAGTCTTAGAAATTCACACCTAATA  738

seq1  GATATTTAGAGGCCCAGTGTTTTGTTTCTAAAAGCAAAGAACATGTAGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTAGAGGCCCAGTGTTTTGTTTCTAAAAGCAAAGAACATGTAGAA  788

seq1  ACTGTAACCAATAAGAAAAGGCCCTTTTAAGTAGAAATGTTAATAGCATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAACCAATAAGAAAAGGCCCTTTTAAGTAGAAATGTTAATAGCATT  838

seq1  ATTAATGACTATATTAGTGTTAATTCTGAAATCTATAAACATGAGGAATG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGACTATATTAGTGTTAATTCTGAAATCTATAAACATGAGGAATG  888

seq1  TTTTTATATTTTAAAATGCAGTAAGTGGTATAAAAAGGATATTAAATTTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATTTTAAAATGCAGTAAGTGGTATAAAAAGGATATTAAATTTG  938

seq1  TTACACATCAATGATTGCCCTGTAAAATATTATATCAACAAGAAACAAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACATCAATGATTGCCCTGTAAAATATTATATCAACAAGAAACAAAA  988

seq1  TGAAGCTGGGCAGTGGTGGCACATGCTTTTAATCCCAGCATTTGGGAGGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTGGGCAGTGGTGGCACATGCTTTTAATCCCAGCATTTGGGAGGC  1038

seq1  AGAGGCAGGAGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGAGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAA  1088

seq1  TTC  1099
      |||
seq2  TTC  1091