BAC Information

Click to search

BAC

Clone NameB6Ng01-153E02
Chromosome17 (Build37)
Map Location 63,141,361 - 63,299,601
singlet/doubletdoublet
Overlap geneEfna5
Upstream genenone
Downstream geneFbxl17, Ppia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153E02.bB6Ng01-153E02.g
ACCDH948620DH948621
length1,075157
definitionDH948620|Mus musculus domesticus DNA, BAC clone: B6Ng01-153E02, 5' end.DH948621|Mus musculus domesticus DNA, BAC clone: B6Ng01-153E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,298,524 - 63,299,601)(63,141,361 - 63,141,517)
sequence
gaattcacctgagctttgtttcctatatcctcctcttactgcctttaact
tcattactattagaccatggctgatgctcttctaggctcaagccaagaat
tagactcctatatcatttcaaaccctcacatctcatgtactcaatctttc
tcttcactttacagatgagggcattaagctaaacgaggcacaaggctttt
cagaggtccaagaggcaggaatggtagcagtgggactcaacttccatctt
ccgactttgaaggctggcactttgagcatcttctgctaaagaatctaatg
tttatcaaatctaacacaatacctttttcccccattcttgaattatttaa
aacttccatcagcactactgctttttctttctaagagcaccaggcaaacc
ctgaaatcatctccatactctcagtattctacaaacaatggccagctcag
tgggtcttttgcatcacatgtgatttttagagccaaagtaatttaacctt
ctctctttcctcttcacagtggtaaactcttttcatagtgtctaaggact
tctttatacatcatgcatgtctcattcgagccatatgcgatctttatgta
taactctgactgaagattgccatgctccactgatttctatcatccaaaca
tgttgttgaaattccaattatgatgactctctctgagtcagccgtataaa
ttcaaccctacaggttagattttcaaattccccgattagcatagagagag
ctattagtatattttgcatcaagctatatataactctttgtactgaactc
tttgttttgcaggaatagcacataagttttattatctttgctcctgggat
cccacaccacacttccctttaaagacggaacacacacacacacacacaca
cacacacacacacacacacacacacacagcatgggaaacttagcaagctg
agctttttaacccactctcaaatggagacctgaaagcttctcagagtctg
tattgacagccagcgcagctgctcagccaagggatggatactctattaaa
aatagaaggctgaagaaagcacgcc
ttctctaaagtgatgactttagggtgaacaactgtaaaaccatataggag
acaatacccataccgtttcattagaggtggggtgggggggcagagggggg
aacaaagaaaagatacacataccgacggggcaggaagaagatggataggg
agggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_63298524_63299601
seq2: B6Ng01-153E02.b_45_1119 (reverse)

seq1  GGCGTGCATTCTTCAGCCTTCTATCTCTAATAGAG-AT-CATCACTTTGG  48
      ||||||| |||||||||||||||| | |||||||| || |||| |||  |
seq2  GGCGTGCTTTCTTCAGCCTTCTATTTTTAATAGAGTATCCATCCCTT--G  48

seq1  GCTGAGCAGCTGCGCTTGCTTGTCAATACAGACTCCTGGGAAGCTTTCAG  98
      |||||||||||||||| || |||||||||||||| ||| |||||||||||
seq2  GCTGAGCAGCTGCGCTGGC-TGTCAATACAGACT-CTGAGAAGCTTTCAG  96

seq1  GTCTCCATTTGAGAGTGGGTTAAAAAGCTCAGCTTGCTAAGTTTCCCATG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATTTGAGAGTGGGTTAAAAAGCTCAGCTTGCTAAGTTTCCCATG  146

seq1  CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG-  195

seq1  TTCCGTCTTTAAAGGGAAGTGTGGTGTGGGATCCCAGGAGCAAAGATAAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTCTTTAAAGGGAAGTGTGGTGTGGGATCCCAGGAGCAAAGATAAT  245

seq1  AAAACTTATGTGCTATTCCTGCAAAACAAAGAGTTCAGTACAAAGAGTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTATGTGCTATTCCTGCAAAACAAAGAGTTCAGTACAAAGAGTTA  295

seq1  TATATAGCTTGATGCAAAATATACTAATAGCTCTCTCTATGCTAATCGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGCTTGATGCAAAATATACTAATAGCTCTCTCTATGCTAATCGGG  345

seq1  GAATTTGAAAATCTAACCTGTAGGGTTGAATTTATACGGCTGACTCAGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGAAAATCTAACCTGTAGGGTTGAATTTATACGGCTGACTCAGAG  395

seq1  AGAGTCATCATAATTGGAATTTCAACAACATGTTTGGATGATAGAAATCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCATCATAATTGGAATTTCAACAACATGTTTGGATGATAGAAATCA  445

seq1  GTGGAGCATGGCAATCTTCAGTCAGAGTTATACATAAAGATCGCATATGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCATGGCAATCTTCAGTCAGAGTTATACATAAAGATCGCATATGG  495

seq1  CTCGAATGAGACATGCATGATGTATAAAGAAGTCCTTAGACACTATGAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAATGAGACATGCATGATGTATAAAGAAGTCCTTAGACACTATGAAA  545

seq1  AGAGTTTACCACTGTGAAGAGGAAAGAGAGAAGGTTAAATTACTTTGGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTACCACTGTGAAGAGGAAAGAGAGAAGGTTAAATTACTTTGGCT  595

seq1  CTAAAAATCACATGTGATGCAAAAGACCCACTGAGCTGGCCATTGTTTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATCACATGTGATGCAAAAGACCCACTGAGCTGGCCATTGTTTGT  645

seq1  AGAATACTGAGAGTATGGAGATGATTTCAGGGTTTGCCTGGTGCTCTTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACTGAGAGTATGGAGATGATTTCAGGGTTTGCCTGGTGCTCTTAG  695

seq1  AAAGAAAAAGCAGTAGTGCTGATGGAAGTTTTAAATAATTCAAGAATGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAGCAGTAGTGCTGATGGAAGTTTTAAATAATTCAAGAATGGG  745

seq1  GGAAAAAGGTATTGTGTTAGATTTGATAAACATTAGATTCTTTAGCAGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGGTATTGTGTTAGATTTGATAAACATTAGATTCTTTAGCAGAA  795

seq1  GATGCTCAAAGTGCCAGCCTTCAAAGTCGGAAGATGGAAGTTGAGTCCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCAAAGTGCCAGCCTTCAAAGTCGGAAGATGGAAGTTGAGTCCCA  845

seq1  CTGCTACCATTCCTGCCTCTTGGACCTCTGAAAAGCCTTGTGCCTCGTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACCATTCCTGCCTCTTGGACCTCTGAAAAGCCTTGTGCCTCGTTT  895

seq1  AGCTTAATGCCCTCATCTGTAAAGTGAAGAGAAAGATTGAGTACATGAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAATGCCCTCATCTGTAAAGTGAAGAGAAAGATTGAGTACATGAGA  945

seq1  TGTGAGGGTTTGAAATGATATAGGAGTCTAATTCTTGGCTTGAGCCTAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGGTTTGAAATGATATAGGAGTCTAATTCTTGGCTTGAGCCTAGA  995

seq1  AGAGCATCAGCCATGGTCTAATAGTAATGAAGTTAAAGGCAGTAAGAGGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATCAGCCATGGTCTAATAGTAATGAAGTTAAAGGCAGTAAGAGGA  1045

seq1  GGATATAGGAAACAAAGCTCAGGTGAATTC  1078
      ||||||||||||||||||||||||||||||
seq2  GGATATAGGAAACAAAGCTCAGGTGAATTC  1075

seq1: chr17_63141361_63141517
seq2: B6Ng01-153E02.g_74_230

seq1  TTCTCTAAAGTGATGACTTTAGGGTGAACAACTGTAAAACCATATAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAAAGTGATGACTTTAGGGTGAACAACTGTAAAACCATATAGGAG  50

seq1  ACAATACCCATACCGTTTCATTAGAGGTGGGGTGGGGGGGCAGAGGGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACCCATACCGTTTCATTAGAGGTGGGGTGGGGGGGCAGAGGGGGG  100

seq1  AACAAAGAAAAGATACACAGACAGACGGGGCAGGAAGAAGAGGGAGAGGG  150
      ||||||||||||||||||| || |||||||||||||||||| ||| ||||
seq2  AACAAAGAAAAGATACACATACCGACGGGGCAGGAAGAAGATGGATAGGG  150

seq1  AGGGAGG  157
      |||||||
seq2  AGGGAGG  157