BAC Information

Click to search

BAC

Clone NameB6Ng01-154B03
Chromosome17 (Build37)
Map Location 27,861,989 - 28,055,978
singlet/doubletdoublet
Overlap geneSpdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1
Upstream geneA930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1
Downstream geneTcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154B03.bB6Ng01-154B03.g
ACCDH949213DH949214
length1,161828
definitionDH949213|Mus musculus domesticus DNA, BAC clone: B6Ng01-154B03, 5' end.DH949214|Mus musculus domesticus DNA, BAC clone: B6Ng01-154B03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,054,803 - 28,055,978)(27,861,989 - 27,862,816)
sequence
gaattccagtcctaggggatctgacaccttcttctggcctctacatacag
actgtaaacagatgtaaaacacccatacacgtcagataaaaagaagagat
tcttttttaaagaataaaaataacatcatcacacaactaagaagaaactc
atatccccatagcaggtaaggggttaaacaccatagatctcaccaaggct
ctcaaaacaaggctgggagcacagaaaatgatagggacacaagttactaa
cagaatgatgtcatttctacttttaaaaaaagatttgtacagaaaaaaag
tccaagtaagcactgcacaaaattttaaaaaattgtgtgtatgtgtgtgc
acgcgcacacactcttgtgttttaagatttttctacttgttacaaaaaca
ggtgtctacaatcccaaaattatataattatatatatatacatatatata
tatgcacacatatatataaagtcacagtgctgtgatgatgatcccagtgg
cggatttctgagtttgaggccagcctggtctacacagcgagttccagcta
gaccctgcctcaaacaaaccaaccaagcaaccaaacatacacaaataaac
tgagtatgtcccctgagtgagtggccaattagtgagctgagaccccacct
gagctgccacagagttgctttgtccctgtctcatttaatgtgagcagaca
caggacccaccacagcaacaaagtgttctagctgtgtcacagtcccacta
aagggcttgcatcactctccccacgtcctcattagggtttctactgccgt
gataaacaccgagaccagaagcaacctggggaagaaagggttatctcagc
tcacacttccttgccacaggtcacattccatcatccagggaagtctgggc
taagaacctgggggcaggaactgatgcagaggccactgggattattgctt
actggcttgctcaacctgctttcatatacacctaggaccacctgcaggag
ctaggccctggcacataatcatcaatcagaaaatgtaccacagaccaatc
tgatgagtatttttctagctgagggttcctcttgcagatacctctagtga
cattaaactacagcagttaacctccacaaccctaaatgctaagattcaaa
gtaagcagaga
gaattcttggggtctatgtggccacactcccggtctagcagacacacctt
ccacatctgaccgcaggctcaggattcaatggcctctcactgtccaggga
gcctaggacaggaggaatgaggaggcagggactcaagacccattccaaga
caggaagtgcccttagagatgtgcactcatgcggggccgggaggcgggcc
tcttgctgcccgtgagaagagaccccccccatcctgacctctgtcacagc
cacatcctgaaccccagctaggaagttcctttgcgacatctcagccttgg
gtgggaggctaggggtgcctccaatttggaagagcccggggcaggggagg
gtgtctcattggttttttgttttgtgctgggagagcattgtcccagggcc
cctgctgctggtgatgtcactggctggccaggagtgatcagaatgaacgg
tgggagagctctagcgggtggttggagcccaagagctttaaatgtcagca
agggcccagggctatggtgccaggatttgctctgagaagagctgttctac
ctgctcagctgcctgtgggggctctggggcaggcgaggggaacgtcccag
gccagagctaagccccgcctcctggtcgcagctcaaggtttcttctggga
cagtttgtgctgtttgttaaactgtggtgggtggcctggctcaaagggcc
tggagtactgagcggagacatcagctcccagagtagtggcggagcgtgct
tgaatgtgcaccgggaacccgtgaagggggaaactggagagagaagagga
aaggagaggagggaaggatgagggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_28054803_28055978
seq2: B6Ng01-154B03.b_47_1207 (reverse)

seq1  TCTCTTGCTTACTGTTTGGAATCTTTAGCATTTTAGGGTTGTGGA-GTGT  49
      |||| |||||||   || ||||| |||||| |||||||||||||| ||  
seq2  TCTC-TGCTTAC---TTTGAATC-TTAGCA-TTTAGGGTTGTGGAGGTTA  44

seq1  ACTGCTGGTTAGTTTTAATGTCAACTAGAGTTATCTGGCAAGAGGGACCC  99
      |||||||  ||| ||||||||| ||||||| ||||| |||||||| ||||
seq2  ACTGCTG--TAG-TTTAATGTC-ACTAGAGGTATCT-GCAAGAGGAACCC  89

seq1  TCAGCTAAGAAAATACTCCATCAGATTGGTCTGTGGTACATTTTCTTGAT  149
      |||||||  |||||||| ||||||||||||||||||||||||||| ||||
seq2  TCAGCTAGAAAAATACT-CATCAGATTGGTCTGTGGTACATTTTC-TGAT  137

seq1  TGATGATTAATGTGCCAGGGCCTAGCTCCCTGCAGGTGGTCCTAGGTTGT  199
      |||||||| |||||||||||||||||| |||||||||||||||||| |||
seq2  TGATGATT-ATGTGCCAGGGCCTAGCT-CCTGCAGGTGGTCCTAGG-TGT  184

seq1  ATATGAAAGCAGGTTGAGCAAGCCAGTAAGCAATAATCCCAGTGGCCTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAAGCAGGTTGAGCAAGCCAGTAAGCAATAATCCCAGTGGCCTCT  234

seq1  GCATCAGTTCCTGCCCCCAGGTTCTTAGCCCAGACTTCCCTGGATGATGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGTTCCTGCCCCCAGGTTCTTAGCCCAGACTTCCCTGGATGATGG  284

seq1  AATGTGACCTGTGGCAAGGAAGTGTGAGCTGAGATAACCCTTTCTTCCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGACCTGTGGCAAGGAAGTGTGAGCTGAGATAACCCTTTCTTCCCC  334

seq1  AGGTTGCTTCTGGTCTCGGTGTTTATCACGGCAGTAGAAACCCTAATGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCTTCTGGTCTCGGTGTTTATCACGGCAGTAGAAACCCTAATGAG  384

seq1  GACGTGGGGAGAGTGATGCAAGCCCTTTAGTGGGACTGTGACACAGCTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGGGGAGAGTGATGCAAGCCCTTTAGTGGGACTGTGACACAGCTAG  434

seq1  AACACTTTGTTGCTGTGGTGGGTCCTGTGTCTGCTCACATTAAATGAGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTTGTTGCTGTGGTGGGTCCTGTGTCTGCTCACATTAAATGAGAC  484

seq1  AGGGACAAAGCAACTCTGTGGCAGCTCAGGTGGGGTCTCAGCTCACTAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAAAGCAACTCTGTGGCAGCTCAGGTGGGGTCTCAGCTCACTAAT  534

seq1  TGGCCACTCACTCAGGGGACATACTCAGTTTATTTGTGTATGTTTGGTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACTCACTCAGGGGACATACTCAGTTTATTTGTGTATGTTTGGTTG  584

seq1  CTTGGTTGGTTTGTTTGAGGCAGGGTCTAGCTGGAACTCGCTGTGTAGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTGGTTTGTTTGAGGCAGGGTCTAGCTGGAACTCGCTGTGTAGAC  634

seq1  CAGGCTGGCCTCAAACTCAGAAATCCGCCACTGGGATCATCATCACAGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCCTCAAACTCAGAAATCCGCCACTGGGATCATCATCACAGCA  684

seq1  CTGTGACTTTATATATATGTGTGCATATATATATATGTATATATATATAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACTTTATATATATGTGTGCATATATATATATGTATATATATATAA  734

seq1  TTATATAATTTTGGGATTGTAGACACCTGTTTTTGTAACAAGTAGAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAATTTTGGGATTGTAGACACCTGTTTTTGTAACAAGTAGAAAAA  784

seq1  TCTTAAAACACAAGAGTGTGTGCGCGTGCACACACATACACACAATTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAACACAAGAGTGTGTGCGCGTGCACACACATACACACAATTTTT  834

seq1  TAAAATTTTGTGCAGTGCTTACTTGGACTTTTTTTCTGTACAAATCTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTTGTGCAGTGCTTACTTGGACTTTTTTTCTGTACAAATCTTTT  884

seq1  TTTAAAAGTAGAAATGACATCATTCTGTTAGTAACTTGTGTCCCTATCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGTAGAAATGACATCATTCTGTTAGTAACTTGTGTCCCTATCAT  934

seq1  TTTCTGTGCTCCCAGCCTTGTTTTGAGAGCCTTGGTGAGATCTATGGTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGCTCCCAGCCTTGTTTTGAGAGCCTTGGTGAGATCTATGGTGT  984

seq1  TTAACCCCTTACCTGCTATGGGGATATGAGTTTCTTCTTAGTTGTGTGAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCCTTACCTGCTATGGGGATATGAGTTTCTTCTTAGTTGTGTGAT  1034

seq1  GATGTTATTTTTATTCTTTAAAAAAGAATCTCTTCTTTTTATCTGACGTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTATTTTTATTCTTTAAAAAAGAATCTCTTCTTTTTATCTGACGTG  1084

seq1  TATGGGTGTTTTACATCTGTTTACAGTCTGTATGTAGAGGCCAGAAGAAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTGTTTTACATCTGTTTACAGTCTGTATGTAGAGGCCAGAAGAAG  1134

seq1  GTGTCAGATCCCCTAGGACTGGAATTC  1176
      |||||||||||||||||||||||||||
seq2  GTGTCAGATCCCCTAGGACTGGAATTC  1161

seq1: chr17_27861989_27862816
seq2: B6Ng01-154B03.g_66_893

seq1  GAATTCTTGGGGTCTATGTGGCCACACTCCCGGTCTAGCAGACACACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGGTCTATGTGGCCACACTCCCGGTCTAGCAGACACACCTT  50

seq1  CCACATCTGACCGCAGGCTCAGGATTCAATGGCCTCTCACTGTCCAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCTGACCGCAGGCTCAGGATTCAATGGCCTCTCACTGTCCAGGGA  100

seq1  GCCTAGGACAGGAGGAATGAGGAGGCAGGGACTCAAGACCCATTCCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGGACAGGAGGAATGAGGAGGCAGGGACTCAAGACCCATTCCAAGA  150

seq1  CAGGAAGTGCCCTTAGAGATGTGCACTCATGCGGGGCCGGGAGGCGGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTGCCCTTAGAGATGTGCACTCATGCGGGGCCGGGAGGCGGGCC  200

seq1  TCTTGCTGCCCGTGAGAAGAGACCCCCCCCATCCTGACCTCTGTCACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTGCCCGTGAGAAGAGACCCCCCCCATCCTGACCTCTGTCACAGC  250

seq1  CACATCCTGAACCCCAGCTAGGAAGTTCCTTTGCGACATCTCAGCCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCTGAACCCCAGCTAGGAAGTTCCTTTGCGACATCTCAGCCTTGG  300

seq1  GTGGGAGGCTAGGGGTGCCTCCAATTTGGAAGAGCCCGGGGCAGGGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGGCTAGGGGTGCCTCCAATTTGGAAGAGCCCGGGGCAGGGGAGG  350

seq1  GTGTCTCATTGGTTTTTTGTTTTGTGCTGGGAGAGCATTGTCCCAGGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCATTGGTTTTTTGTTTTGTGCTGGGAGAGCATTGTCCCAGGGCC  400

seq1  CCTGCTGCTGGTGATGTCACTGGCTGGCCAGGAGTGATCAGAATGAACGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGCTGGTGATGTCACTGGCTGGCCAGGAGTGATCAGAATGAACGG  450

seq1  TGGGAGAGCTCTAGCGGGTGGTTGGAGCCCAAGAGCTTTAAATGTCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAGCTCTAGCGGGTGGTTGGAGCCCAAGAGCTTTAAATGTCAGCA  500

seq1  AGGGCCCAGGGCTATGGTGCCAGGATTTGCTCTGAGAAGAGCTGTTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCAGGGCTATGGTGCCAGGATTTGCTCTGAGAAGAGCTGTTCTAC  550

seq1  CTGCTCAGCTGCCTGTGGGGGCTCTGGGGCAGGCGAGGGGAACGTCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGCTGCCTGTGGGGGCTCTGGGGCAGGCGAGGGGAACGTCCCAG  600

seq1  GCCAGAGCTAAGCCCCGCCTCCTGGTCGCAGCTCAAGGTTTCTTCTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGCTAAGCCCCGCCTCCTGGTCGCAGCTCAAGGTTTCTTCTGGGA  650

seq1  CAGTTTGTGCTGTTTGTTAAACTGTGGTGGGTGGCCTGGCTCAAAGGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTGCTGTTTGTTAAACTGTGGTGGGTGGCCTGGCTCAAAGGGCC  700

seq1  TGGAGTACTGAGCGGAGACATCAGCTCCCAGAGTAGTGGCGGAGCGTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTACTGAGCGGAGACATCAGCTCCCAGAGTAGTGGCGGAGCGTGCT  750

seq1  TGAATGTGCACCGGGAACCCGTGAAGGGGGAAACTGGAGAGAGAAGAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTGCACCGGGAACCCGTGAAGGGGGAAACTGGAGAGAGAAGAGGA  800

seq1  AAGGAGAGGAGGGAAGGATGAGGGGGGA  828
      ||||||||||||||||||||||||||||
seq2  AAGGAGAGGAGGGAAGGATGAGGGGGGA  828