BAC Information

Click to search

BAC

Clone NameB6Ng01-154C03
Chromosome17 (Build37)
Map Location 30,298,852 - 30,433,520
singlet/doubletdoublet
Overlap geneZfand3, Btbd9
Upstream geneCpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888
Downstream geneEG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154C03.bB6Ng01-154C03.g
ACCDH949261DH949262
length1,1791,113
definitionDH949261|Mus musculus domesticus DNA, BAC clone: B6Ng01-154C03, 5' end.DH949262|Mus musculus domesticus DNA, BAC clone: B6Ng01-154C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,298,852 - 30,300,055)(30,432,388 - 30,433,520)
sequence
gaattcaaccacaaagaaacaggttaaattcagaaacaaatacaaccaat
tccagctttagagagcagcagacgtaatttaggtttatttcaaaaagtaa
aggccaaggctagagagatggctcagtgattaagcgctctggctggtttt
gcagaagacctgggtttggtttccagcaccctctttgggtagtttacaat
cctttaactccttttttgcctcctgcacaaatgtggtgtactacatatat
tcaggtgtcgtgtgtaagcacacacacacataagatagtttttaagtgag
gatagaggttgtgccagccacaagagcataaggtgatcttttaaagagat
gactccttcctgggaacttcctagaattcagaacctcggactcactaggc
acgacagagggatactgggatgtggagtcggcgggcgggcgggcgggcgt
ctgcagcaggattgtgttttgtgtgaatagaaaacctgaggagaactaca
tggcttctgagtgccttgtgagcagccaatgcttgggaaattgagacagt
gtagcactgctcagctctgagcgctctccagccacagctatgagatccta
gtgacagaagctggacagagcagagctcacagcaactcttcagtttcatc
cagagaacaagtgttctgcttgttcagctctttgtcataatcaggaatct
tcttgctggtggcgaatttctagtcttgttaaataaaatggaggctgaag
ggagacattgtcattaatcatttttctttgattctataacccatggagta
ggtagtttattttaaagaacctgatatatgataatcctattgttagaagc
cagacaaactaagcaatactataggtgggtcctttagtctgtaaatactt
tgccgttggacaaatgtagatatcttttctatacaaagtaagatttgagc
tgggttgtggtagtgcacactttaatcccagcacttgggagacaggaggc
agtggatttctgtgaattcaggtcagcctgtctacagagctagttcagga
cagtcaggctactcagagaccctggtctctcaacaatcaaaacccttcca
ttcagtgatcatttatagaatatttgtggatcacagtaaggtaggagttt
gatctgaagcggggtttatgagtattgac
gaattctgactttctcaagaaaagtgtgttactagggctctgggcaggca
gaatgggcccacctggtctcatctaagtgtgggatgaaaatggttcctgc
aaacaatttcatttttcctgactcagaggagagatgatgagcaggcacac
aaccagaggcagaattgtatatctcagcacagtgtggcgcctctaacttc
ctgaaggccagctattgtttctccagtaagaaaatccattcaaccggagt
gctgtctaactagccaagcattcagagagacacgtctcggtgaagctaac
attatgttgtcagggactgcatttgcctcttctgtgacattattaagagg
aaagggaggaggtttcctggccaccaatgcccgtggacaacactgggtat
cttggcaggctgcagttacggcggatgatgtacccagatagacgtttatt
gatgtgaaactagatcagtggcccctttccctggggatgggtaatggacc
agctgtgggttgattagtcagtagcacttgacccacagcttccactgctc
atgataacaaactggctttcctagtcactgtgtctgtagccacccacagt
gcaagtgctaccaagcccagagtcgtgctccacagagaggagattgcaga
gctgggagcctagaaacccacctccctctatcacataagctttgaaaaca
catctcttttcagttggggacttctcaggcaaaggtcttcattgttgatg
ttcataattcttcttgtggtatgtagtgtgctatggataagatcgttcat
tctttccttgccctttggctgggcaggcaggcaggcagagccaggtttct
ggcagagagagtgcttggtcctgttagtgtgcctgacatgggtagtgcct
gtgacacatcgtgggaggcagctggagagatgatctccactcccccgtcc
cttcatttctttcattcattcacaaacatcttttttcttaggatctattc
tgtgtagatgctaggagttctgccatgatggaagagcaaccctgcatgct
cctggagctgcacttagaagaacgaccagccggaatcagctgctttagta
tgctaagctcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_30298852_30300055
seq2: B6Ng01-154C03.b_40_1218

seq1  GAATTCAACCACAAAGAAACAGGTTAAATTCAGAAACAAATACAACCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCACAAAGAAACAGGTTAAATTCAGAAACAAATACAACCAAT  50

seq1  TCCAGCTTTAGAGAGCAGCAGACGTAATTTAGGTTTATTTCAAAAAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTTTAGAGAGCAGCAGACGTAATTTAGGTTTATTTCAAAAAGTAA  100

seq1  AGGCCAAGGCTAGAGAGATGGCTCAGTGATTAAGCGCTCTGGCTGGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAGGCTAGAGAGATGGCTCAGTGATTAAGCGCTCTGGCTGGTTTT  150

seq1  GCAGAAGACCTGGGTTTGGTTTCCAGCACCCTCTTTGGGTAGTTTACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGACCTGGGTTTGGTTTCCAGCACCCTCTTTGGGTAGTTTACAAT  200

seq1  CCTTTAACTCCTTTTTTGCCTCCTGCACAAATGTGGTGTACTACATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAACTCCTTTTTTGCCTCCTGCACAAATGTGGTGTACTACATATAT  250

seq1  TCAGGTGTCGTGTGTAAGCACACACACACATAAGATAGTTTTTAAGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGTCGTGTGTAAGCACACACACACATAAGATAGTTTTTAAGTGAG  300

seq1  GATAGAGGTTGTGCCAGCCACAAGAGCATAAGGTGATCTTTTAAAGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGGTTGTGCCAGCCACAAGAGCATAAGGTGATCTTTTAAAGAGAT  350

seq1  GACTCCTTCCTGGGAACTTCCTAGAATTCAGAACCTCGGACTCACTAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTTCCTGGGAACTTCCTAGAATTCAGAACCTCGGACTCACTAGGC  400

seq1  ACGACAGAGGGATACTGGGATGTGGAGTCGGCGGGCGGGCGGGCGGGCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACAGAGGGATACTGGGATGTGGAGTCGGCGGGCGGGCGGGCGGGCGT  450

seq1  CTGCAGCAGGATTGTGTTTTGTGTGAATAGAAAACCTGAGGAGAACTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCAGGATTGTGTTTTGTGTGAATAGAAAACCTGAGGAGAACTACA  500

seq1  TGGCTTCTGAGTGCCTTGTGAGCAGCCAATGCTTGGGAAATTGAGACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTGAGTGCCTTGTGAGCAGCCAATGCTTGGGAAATTGAGACAGT  550

seq1  GTAGCACTGCTCAGCTCTGAGCGCTCTCCAGCCACAGCTATGAGATCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACTGCTCAGCTCTGAGCGCTCTCCAGCCACAGCTATGAGATCCTA  600

seq1  GTGACAGAAGCTGGACAGAGCAGAGCTCACAGCAACTCTTCAGTTTCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGAAGCTGGACAGAGCAGAGCTCACAGCAACTCTTCAGTTTCATC  650

seq1  CAGAGAACAAGTGTTCTGCTTGTTCAGCTCTTTGTCATAATCAGGAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAACAAGTGTTCTGCTTGTTCAGCTCTTTGTCATAATCAGGAATCT  700

seq1  TCTTGCTGGTGGCGAATTTCTAGTCTTGTTAAATAAAATGGAGGCTGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTGGTGGCGAATTTCTAGTCTTGTTAAATAAAATGGAGGCTGAAG  750

seq1  GGAGACATTGTCATTAATCATTTTTCTTTGATTCTATAACCCATGGAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACATTGTCATTAATCATTTTTCTTTGATTCTATAACCCATGGAGTA  800

seq1  GGTAGTTTATTTTAAAGAACCTGATATATGATAATCCTATTGTTAGAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTTATTTTAAAGAACCTGATATATGATAATCCTATTGTTAGAAGC  850

seq1  CAGACAAACTAAGCAATACTATAGGTGGGTCCTTTAGTCTGTAAATACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAACTAAGCAATACTATAGGTGGGTCCTTTAGTCTGTAAATACTT  900

seq1  TGCCGTTGGACAAATGTAGATATCTTTTCTATACAAAGTAAGATTTGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGCCGTTGGACAAATGTAGATATCTTTTCTATACAAAGTAAGATTTG-AG  949

seq1  CT-GGTTGTGGTAGTGCACACCTTTAATCCCAGCACTTGGGAGACA-GAG  998
      || ||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  CTGGGTTGTGGTAGTGCACA-CTTTAATCCCAGCACTTGGGAGACAGGAG  998

seq1  GCAGGTGGATTTCTGTGAATTCAAGGCCAGCCTGGTCTACAGAGCAAGTT  1048
      ||| |||||||||||||||||| ||| |||||| ||||||||||| ||||
seq2  GCA-GTGGATTTCTGTGAATTC-AGGTCAGCCT-GTCTACAGAGCTAGTT  1045

seq1  CCAGGACAGCCAGGGCTACACAGAGAAACCCT-GTCTCTCAAAACAATAC  1097
       |||||||| || |||||| |||||  ||||| |||||||  |||||| |
seq2  -CAGGACAGTCA-GGCTACTCAGAG--ACCCTGGTCTCTC--AACAAT-C  1088

seq1  AAAACCCCTCACATCAGTTGATACTAATTTATTAGATATTTTGTGAGTAT  1147
      ||||||| ||   |||| |||   | ||||||   |||||   || | ||
seq2  AAAACCCTTCCATTCAG-TGA---TCATTTATAGAATATT---TGTGGAT  1131

seq1  CAACAAGTAGAGTAAAGAGAGTTTGATCTGAGAGCGGTGTTTAAGTGAGT  1197
      ||   ||||  |||    ||||||||||||| ||||| |||||  |||||
seq2  CA--CAGTAAGGTA---GGAGTTTGATCTGA-AGCGGGGTTTA--TGAGT  1173

seq1  AGTTGAC  1204
      | |||||
seq2  A-TTGAC  1179

seq1: chr17_30432388_30433520
seq2: B6Ng01-154C03.g_67_1179 (reverse)

seq1  CAAGAGCTTAGCATACTGTAAGCATGCTTGTTTCCTGCTTGTGTCTGTCT  50
      |||||||||||||||||  ||||| || || |||| ||| ||    || |
seq2  CAAGAGCTTAGCATACT-AAAGCA-GC-TGATTCCGGCTGGT---CGT-T  43

seq1  GTCCTCAGTGCCAGCTCCAAGAGCATGCAGTGCTTGGCTTCTCCACTCAA  100
       | || |||| |||||||| |||||||||| |  | |||  |||| ||| 
seq2  CTTCTAAGTG-CAGCTCCAGGAGCATGCAGGG--TTGCTCTTCCA-TCAT  89

seq1  TGCAGTACTCCTTAGCATCTACCACAGGATATGATCCAAAGAAAAAAAGA  150
       |||| ||||| ||||||||| ||||| ||| ||||| ||| ||||||||
seq2  GGCAGAACTCC-TAGCATCTA-CACAGAATA-GATCCTAAG-AAAAAAGA  135

seq1  TGTTTGTTGAATGAATGAAAGAAAATGAAGGGACGGGGGAGTGGAGATCA  200
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTTTG-TGAATGAATGAAAG-AAATGAAGGGACGGGGGAGTGGAGATCA  183

seq1  TCTCTCCAGCTGCCCTCCCACGATGTGTCACAGGCACTTACCCATGTCAG  250
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  TCTCTCCAGCTG-CCTCCCACGATGTGTCACAGGCAC-TACCCATGTCAG  231

seq1  GCACACTAACAGGACCAAGCACTCTCTCTGCCAGGAAACCTGGCTCTGCC  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCACACTAACAGGACCAAGCACTCTCTCTGCCA-GAAACCTGGCTCTGCC  280

seq1  TGCCTGCCTGCCCAGCCAAAGGGCAAGGAAAGAATGAACGATCTTATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCTGCCCAGCCAAAGGGCAAGGAAAGAATGAACGATCTTATCCA  330

seq1  TAGCACACTACATACCACAAGAAGAATTATGAACATCAACAATGAAGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACACTACATACCACAAGAAGAATTATGAACATCAACAATGAAGACC  380

seq1  TTTGCCTGAGAAGTCCCCAACTGAAAAGAGATGTGTTTTCAAAGCTTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGAGAAGTCCCCAACTGAAAAGAGATGTGTTTTCAAAGCTTATG  430

seq1  TGATAGAGGGAGGTGGGTTTCTAGGCTCCCAGCTCTGCAATCTCCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAGGGAGGTGGGTTTCTAGGCTCCCAGCTCTGCAATCTCCTCTCT  480

seq1  GTGGAGCACGACTCTGGGCTTGGTAGCACTTGCACTGTGGGTGGCTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCACGACTCTGGGCTTGGTAGCACTTGCACTGTGGGTGGCTACAG  530

seq1  ACACAGTGACTAGGAAAGCCAGTTTGTTATCATGAGCAGTGGAAGCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTGACTAGGAAAGCCAGTTTGTTATCATGAGCAGTGGAAGCTGTG  580

seq1  GGTCAAGTGCTACTGACTAATCAACCCACAGCTGGTCCATTACCCATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGTGCTACTGACTAATCAACCCACAGCTGGTCCATTACCCATCCC  630

seq1  CAGGGAAAGGGGCCACTGATCTAGTTTCACATCAATAAACGTCTATCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAAGGGGCCACTGATCTAGTTTCACATCAATAAACGTCTATCTGG  680

seq1  GTACATCATCCGCCGTAACTGCAGCCTGCCAAGATACCCAGTGTTGTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCATCCGCCGTAACTGCAGCCTGCCAAGATACCCAGTGTTGTCCA  730

seq1  CGGGCATTGGTGGCCAGGAAACCTCCTCCCTTTCCTCTTAATAATGTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCATTGGTGGCCAGGAAACCTCCTCCCTTTCCTCTTAATAATGTCAC  780

seq1  AGAAGAGGCAAATGCAGTCCCTGACAACATAATGTTAGCTTCACCGAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGCAAATGCAGTCCCTGACAACATAATGTTAGCTTCACCGAGAC  830

seq1  GTGTCTCTCTGAATGCTTGGCTAGTTAGACAGCACTCCGGTTGAATGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCTCTGAATGCTTGGCTAGTTAGACAGCACTCCGGTTGAATGGAT  880

seq1  TTTCTTACTGGAGAAACAATAGCTGGCCTTCAGGAAGTTAGAGGCGCCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTACTGGAGAAACAATAGCTGGCCTTCAGGAAGTTAGAGGCGCCAC  930

seq1  ACTGTGCTGAGATATACAATTCTGCCTCTGGTTGTGTGCCTGCTCATCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCTGAGATATACAATTCTGCCTCTGGTTGTGTGCCTGCTCATCAT  980

seq1  CTCTCCTCTGAGTCAGGAAAAATGAAATTGTTTGCAGGAACCATTTTCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCTGAGTCAGGAAAAATGAAATTGTTTGCAGGAACCATTTTCAT  1030

seq1  CCCACACTTAGATGAGACCAGGTGGGCCCATTCTGCCTGCCCAGAGCCCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACTTAGATGAGACCAGGTGGGCCCATTCTGCCTGCCCAGAGCCCT  1080

seq1  AGTAACACACTTTTCTTGAGAAAGTCAGAATTC  1133
      |||||||||||||||||||||||||||||||||
seq2  AGTAACACACTTTTCTTGAGAAAGTCAGAATTC  1113