BAC Information

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BAC

Clone NameB6Ng01-154C18
Chromosome17 (Build37)
Map Location 78,815,952 - 78,816,983
singlet/doubletsinglet
Overlap geneFez2
Upstream geneLOC100043887, LOC668795, LOC383275, Crim1
Downstream geneLOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154C18.bB6Ng01-154C18.g
ACCDH949290DH949291
length1,2521,017
definitionDH949290|Mus musculus domesticus DNA, BAC clone: B6Ng01-154C18, 5' end.DH949291|Mus musculus domesticus DNA, BAC clone: B6Ng01-154C18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttagttcaggcatagtctcttcagatgaattttgttttaacagg
ctgcagacattgttgaatgggcctgaatggggcctgaatgggccttgccc
ttgggacacctatcctgtggctccagtgtagggcaggaggtttctgctcc
acagagcttctgtcccaactacagctgcatcggcaacttctgctcaccca
ggctcctcttcctggcaaactgcacagttttcaggtctttctgtttaact
tgttgctctctcagtgtagactgggtaagagcggcgagcagtcaccctga
taccacctgaatattgtcttgtcttgaaatgtcttctccccaaacaaatt
ggttgttcgtcacttttaaatttggccttacttgagttcttagaatgtgt
gaataacctctatctctgttctccattgaatatcttattcccctgtggag
agtagggactccactacacatatttttctcagcattctgatcttacaaac
tccccccaagagtggcctgttaagtcgtgcttacagtacgatactgctcc
tctggtttacggctttaaactcttcagcattcctcctacaaactgtctct
aaagtcttacaaacccgcacgataggtttatccgagtgacggcaggaggg
tgtaaggtggagagccacacagcacccacgcgcagacatcggagttctgc
atgcaatcatagagtgatttggtttcatcagctgaaaccgcagcaggtga
gaaatgtagaccaggtccatgttgggtgtaaaggcagggaactcttgctt
cttcctttgtctttaatttccctgacctttctgtctctctcaagcatgcc
ggggaaacaggaggctctgacggactcgtgcactagtcaaactgaatctt
ctgacatggagcggagacaccagccacagcaagccagttgcctggttcta
tgtgtaaaatttgagttttcctgttgcagaggaccacgtttctttaaagt
caggattcataatcaaatgtttttttgagtggaggtaggtaatgatagga
ttatcatccattgaaatttaagcacctggacatgaagcaacaccttggca
gccaaatacttgcatcctcaaccgctttaactagcgggaacgctaccacg
tgggctatagcttgtgcaaagatgattgactactgattgctactctaggc
gtcattggaggtatcagtaccgccaacctaggcctagtcatgttaaggtc
ga
gaattcctcccatggttttggtgcctaaagataccgggcatcaagcaaga
ccaatgaccccggagacctgggatctgtaaaaaaaaaaaaaaaaaaaaaa
gagagagagagagagagagagagagagagagaagctgactgtacaagtgg
tctgactccaaggatgcgtctgacaggcttgctttacccgtccacaatca
cacaagtactcacacaaaattattaagatgtaataaaaaatgctgttgtt
tcaattctcctcactaacatgtagtgtctccggccaccattgtgttccca
atgttctggaaacgggtcctacccatcaccttccaagagggccagtactc
ttagggtctccactcaccctgcaaacaaaacactcgagctcactggctcg
caccattcttttggctagattttcacgaaaagatgcggtacataattaca
actctcgtgtaaacaaacaataattgggtttaaaagtgtctgaataaagc
gctttcatcaacccctgtgaatgtcatcacactgaagctaatcacagaga
aaacgggagccattgctgctgtgcactggtcttctggatacactattaga
tatcattagtaagggctaccatttactttttgcctctgtgacagtttgtt
cttgtgggcccaagagacttctataacttcaatggtaactcacacctctg
cactctgcctaactcccagatctccatcaaggattcagttagcggctata
aagtcttcattcggacatcccctttgaaatctcccgtatccggtacaaat
acctatcaaagtactcattacactcggaaaacatgtgcttaaccaaccta
tgtcccatcccactttgtgtcctacttgagaggagcaatgctcacttcgg
catccccagtgccaggcccatgacatgggctttagaaaagcgagttgaat
gatgactgagccacacgtgcccagagcaggtctcacagagcacacaggtc
tgcaggaggttcaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_78815952_78816983
seq2: B6Ng01-154C18.g_66_1082

seq1  GAATTCCTCCCATGGTTTTGGTGCCTAAAGATACCGGGCATCAAGCAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCATGGTTTTGGTGCCTAAAGATACCGGGCATCAAGCAAGA  50

seq1  CCAATGACCCCGGAGACCTGGGATCTGTAAAAAAAAAAAAAAAAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGACCCCGGAGACCTGGGATCTGTAAAAAAAAAAAAAAAAAAAAAA  100

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCTGACTGTACAAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCTGACTGTACAAGTGG  150

seq1  TCTGACTCCAAGGATGCGTCTGACAGGCTTGCTTTACCCGTCCACAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCCAAGGATGCGTCTGACAGGCTTGCTTTACCCGTCCACAATCA  200

seq1  CACAAGTACTCACACAAAATTATTAAGATGTAATAAAAAATGCTGTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTACTCACACAAAATTATTAAGATGTAATAAAAAATGCTGTTGTT  250

seq1  TCAATTCTCCTCACTAACATGTAGTGTCTCCGGCCACCATTGTGTTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCTCCTCACTAACATGTAGTGTCTCCGGCCACCATTGTGTTCCCA  300

seq1  ATGTTCTGGAAACGGGTCCTACCCATCACCTTCCAAGAGGGCCAGTACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTGGAAACGGGTCCTACCCATCACCTTCCAAGAGGGCCAGTACTC  350

seq1  TTAGGGTCTCCACTCACCCTGCAAACAAAACACTCGAGCTCACTGGCTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTCTCCACTCACCCTGCAAACAAAACACTCGAGCTCACTGGCTCG  400

seq1  CACCATTCTTTTGGCTAGATTTTCACGAAAAGATGCGGTACATAATTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTCTTTTGGCTAGATTTTCACGAAAAGATGCGGTACATAATTACA  450

seq1  ACTCTCGTGTAAACAAACAATAATTGGGTTTAAAAGTGTCTGAATAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCGTGTAAACAAACAATAATTGGGTTTAAAAGTGTCTGAATAAAGC  500

seq1  GCTTTCATCAACCCCTGTGAATGTCATCACACTGAAGCTAATCACAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCATCAACCCCTGTGAATGTCATCACACTGAAGCTAATCACAGAGA  550

seq1  AAACGGGAGCCATTGCTGCTGTGCACTGGTCTTCTGGATACACTATTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGGAGCCATTGCTGCTGTGCACTGGTCTTCTGGATACACTATTAGA  600

seq1  TATCATTAGTAAGGGCTACCATTTACTTTTTGCCTCTGTGACAGTTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTAGTAAGGGCTACCATTTACTTTTTGCCTCTGTGACAGTTTGTT  650

seq1  CTTGTGGGCCCAAGAGACTTCTATAACTTCAATGGTAACTCACACCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGGCCCAAGAGACTTCTATAACTTCAATGGTAACTCACACCTCTG  700

seq1  CACTCTGCCTAACTCCCAGATCTCCATCAAGGATTCAGTTAGCGGCTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGCCTAACTCCCAGATCTCCATCAAGGATTCAGTTAGCGGCTATA  750

seq1  AAGTCTTCATTCGGACATCCCCTTTGAAATCTCCCGTATCCGGTACAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTCATTCGGACATCCCCTTTGAAATCTCCCGTATCCGGTACAAAT  800

seq1  ACCTATCAAAGTACTCATTACACTCGGAAAACATGTGCTTAACCAACCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATCAAAGTACTCATTACACTCGGAAAACATGTGCTTAACCAACCTA  850

seq1  TGTCCCATCCCACTTTGTGTCCTACTTGAGAGGAGCAATGCCCACTTCGG  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTCCCATCCCACTTTGTGTCCTACTTGAGAGGAGCAATGCTCACTTCGG  900

seq1  CATCCCCAGTGCCAGGCCCCATGACAGGGGCTTTAAGAAAAGCGAGTTGA  950
      |||||||||||||||| ||||||||| ||||||| |||||||||||||||
seq2  CATCCCCAGTGCCAGG-CCCATGACATGGGCTTT-AGAAAAGCGAGTTGA  948

seq1  ATGAATGAACTGAGCCACACGTGCCCCAGGAGGCAGGGTCTCCACAAGGA  1000
      ||| ||| ||||||||||||||| |||||   ||| ||||| ||||    
seq2  ATG-ATG-ACTGAGCCACACGTG-CCCAG--AGCA-GGTCT-CACA---G  988

seq1  AGCACACAGGGGTCTGCAGGAGGGTTCAAGGG  1032
      ||||||||  ||||||||||| ||||||||||
seq2  AGCACACA--GGTCTGCAGGA-GGTTCAAGGG  1017