BAC Information

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BAC

Clone NameB6Ng01-154C20
Chromosome17 (Build37)
Map Location 28,980,224 - 29,127,207
singlet/doubletdoublet
Overlap genePnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38
Upstream geneSnrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3
Downstream geneSfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154C20.bB6Ng01-154C20.g
ACCDH949294DH949295
length1,1571,173
definitionDH949294|Mus musculus domesticus DNA, BAC clone: B6Ng01-154C20, 5' end.DH949295|Mus musculus domesticus DNA, BAC clone: B6Ng01-154C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,980,224 - 28,981,404)(29,126,044 - 29,127,207)
sequence
gaattcatgacaaatgacgaccagtaagaaatggccaggtaccaatacca
tccagcattttctatcatctgttgggttatatttatattccttcttaaca
tcacgcatcctttcacgtgtttgctttaacaaaatatcttttcctctgtg
tctgcttcaggaaaacattctttcacgtgtctcctttagcaagacatcct
ttcacctgtgtgcctcagcaaaacatttgacatcactgactttccaaaga
aaccagaactttctacttcacctcagcctcctggctcttcctggcttgta
ttggtagatggtactaagccagactgcctattgctattgtgttaaaatat
tagtagtctctacagtactaatatatccacctccagcaactaggctgtgg
ggtacctttttcacggacaccggctgtattctttactttcctgttgctgt
gagaaaatgctctgacagaagtaacttgaaggagaaatgttttattttgt
ctcacagtcctggagggacaaagtccatcctgataagagggcatggcagc
aggaacaggaagctgaacttaccatatccacagtcaggaggccgagagca
gagaccaggaaacaatgctggtctataaagctttcctccagcgagactcc
acctcctaaagatcctgttgcatcaactgactatatgaccactctatggt
acaattattgggaaggttttattgtaaatacaagagaatggccagaggcg
cctggaagggtctattgcagagacagcagtaggctgagcatggcaagtgt
actggacctggccatgagaaacagcagcaaagcagagagaggaacagaga
gagagtgcacagcgggcagggagtataattgagtagggtaataaagagaa
ctggcagctgtagggagggaagccagtgagctggagatagagggccagga
ctccggaaagtgtagcagtccttgtaatgccgaggagtatgaggtcagtg
tgtgctttggatgctacagacacacagatagcctttgtcccttctgcttt
tagattgaggacaaagtttctagcatgtctcatgagtcagtgggggacat
cacttctgactaaaacatgcagacagaattcttttcatgggccaaattct
agaaatg
gaattccagttagcccttgagaataaggaagtgttgttcaaaatgctccc
tgttcaagaaaaagcacatggtacttgattagaaagacaaaatgcagaaa
gacataggggaaaaaccacttctcagtctttttgactgagatcaggtgta
gtatctgctcttagcagtttaatatctagtatgtcctccatctaaggaca
gtaaattaaatggagttttggacctgggagaaggaacaggagcatgctct
ttgacttggcattgcagtaagagaacaaaaccccacaaaacttaggtatc
ttgggggaaaggagagaatgcccaggagcttgccaggaggttttcctttt
taatagaccattagttttcttttcacagtacaattttctctttaaaagca
ctgggaaaatggtgctagagagatggcttattggttaaaagcccttactg
cacttttagaatacagtgcccacttacagacacattcactttaattaaaa
ataattgaattcttttaaaaaattggaaaataggctggacatagtagctt
aggtctttaatcccagcacctaggagtcagaggcagatggctctctgtga
gtttggggccttttctccatagtgagcttcaggactacatagatcctgtc
agaaaaaaatgaaaaaaaaatagagaaagaaaacttttttcctaataaaa
cattttcgaaagaatttaacagcccgagccttgggtcagtggttagggca
ctcactgctcttgcagaggacctgactgagctctgtttccaggacccacc
aggggactcacaactgcacacagctctagttccgcgggatcggagaccct
cttttggactccttgagtatctgcactcacacatatacctacacacagac
agactcatgcacatacaataacagatcacttgggtattgtggcccatggt
tttaagtcagcatgcaggagtcagaggcacacagatctctgaattgggca
ccagctagggctgtacagtgagcctcttgcctagtggttcggagcatctt
cttctctttcacaattcccaggtgttccacagtcggctggcaacctgtcc
tttccttcaggtccttgaggaattcattggtctttgggccttcctcaagg
caattgcttacattgggggtgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_28980224_28981404
seq2: B6Ng01-154C20.b_49_1205

seq1  GAATTCATGACAAATGACGACCAGTAAGAAATGGCCAGGTACCAATACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACAAATGACGACCAGTAAGAAATGGCCAGGTACCAATACCA  50

seq1  TCCAGCATTTTCTATCATCTGTTGGGTTATATTTATATTCCTTCTTAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCATTTTCTATCATCTGTTGGGTTATATTTATATTCCTTCTTAACA  100

seq1  TCACGCATCCTTTCACGTGTTTGCTTTAACAAAATATCTTTTCCTCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGCATCCTTTCACGTGTTTGCTTTAACAAAATATCTTTTCCTCTGTG  150

seq1  TCTGCTTCAGGAAAACATTCTTTCACGTGTCTCCTTTAGCAAGACATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCAGGAAAACATTCTTTCACGTGTCTCCTTTAGCAAGACATCCT  200

seq1  TTCACCTGTGTGCCTCAGCAAAACATTTGACATCACTGACTTTCCAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTGTGTGCCTCAGCAAAACATTTGACATCACTGACTTTCCAAAGA  250

seq1  AACCAGAACTTTCTACTTCACCTCAGCCTCCTGGCTCTTCCTGGCTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAACTTTCTACTTCACCTCAGCCTCCTGGCTCTTCCTGGCTTGTA  300

seq1  TTGGTAGATGGTACTAAGCCAGACTGCCTATTGCTATTGTGTTAAAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGATGGTACTAAGCCAGACTGCCTATTGCTATTGTGTTAAAATAT  350

seq1  TAGTAGTCTCTACAGTACTAATATATCCACCTCCAGCAACTAGGCTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTCTCTACAGTACTAATATATCCACCTCCAGCAACTAGGCTGTGG  400

seq1  GGTACCTTTTTCACGGACACCGGCTGTATTCTTTACTTTCCTGTTGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTTTTTCACGGACACCGGCTGTATTCTTTACTTTCCTGTTGCTGT  450

seq1  GAGAAAATGCTCTGACAGAAGTAACTTGAAGGAGAAATGTTTTATTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATGCTCTGACAGAAGTAACTTGAAGGAGAAATGTTTTATTTTGT  500

seq1  CTCACAGTCCTGGAGGGACAAAGTCCATCCTGATAAGAGGGCATGGCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGTCCTGGAGGGACAAAGTCCATCCTGATAAGAGGGCATGGCAGC  550

seq1  AGGAACAGGAAGCTGAACTTACCATATCCACAGTCAGGAGGCCGAGAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGGAAGCTGAACTTACCATATCCACAGTCAGGAGGCCGAGAGCA  600

seq1  GAGACCAGGAAACAATGCTGGTCTATAAAGCTTTCCTCCAGCGAGACTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCAGGAAACAATGCTGGTCTATAAAGCTTTCCTCCAGCGAGACTCC  650

seq1  ACCTCCTAAAGATCCTGTTGCATCAACTGACTATATGACCACTCTATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTAAAGATCCTGTTGCATCAACTGACTATATGACCACTCTATGGT  700

seq1  ACAATTATTGGGAAGGTTTTATTGTAAATACAAGAGAATGGCCAGAGGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTATTGGGAAGGTTTTATTGTAAATACAAGAGAATGGCCAGAGGCG  750

seq1  CCTGGAAGGGTCTATTGCAGAGACAGCAGTAGGCTGAGCATGGCAAGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAGGGTCTATTGCAGAGACAGCAGTAGGCTGAGCATGGCAAGTGT  800

seq1  ACTGGACCTGGCCATGAGAAACAGCAGCAAAGCAGAGAGAGGAACAGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACCTGGCCATGAGAAACAGCAGCAAAGCAGAGAGAGGAACAGAGA  850

seq1  GAGAGTGCACAGCGGGCAGGGAGTATAATTGAGTAGGGTAATAAAGAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGCACAGCGGGCAGGGAGTATAATTGAGTAGGGTAATAAAGAGAA  900

seq1  CTGGCAGCTGTAGGGAGGGAAGCCAGTGAGCTGGAGGATAGGAGGGGCCA  950
      ||||||||||||||||||||||||||||||||||| |||||   ||||||
seq2  CTGGCAGCTGTAGGGAGGGAAGCCAGTGAGCTGGA-GATAG--AGGGCCA  947

seq1  GGACTCCGGAAAGTGTAGCAGGTCCTTGTAATGCCGAGGGAGTATGGAGG  1000
      |||||||||||||||||||| |||||||||||||||| ||||||| ||||
seq2  GGACTCCGGAAAGTGTAGCA-GTCCTTGTAATGCCGA-GGAGTAT-GAGG  994

seq1  TCAGTGTGTGCTTTGGGATGCTAACAGACACCACAGATAGCCTTTGTCCC  1050
      |||||||||||||| ||||||| ||||||| |||||||||||||||||||
seq2  TCAGTGTGTGCTTT-GGATGCT-ACAGACA-CACAGATAGCCTTTGTCCC  1041

seq1  TTCTGCCTTTTAGAATTTGAGGACCAAAGGTTTCCTAGCATGTCTCATGA  1100
      ||||| ||||||||  ||||||| |||||  || ||||||||||||||||
seq2  TTCTG-CTTTTAGA--TTGAGGA-CAAAG--TTTCTAGCATGTCTCATGA  1085

seq1  GTCAGTGGGGGACAATTCACCTTCTGACTAAAACATGGGCCATAGACCAG  1150
      ||||||||||||||  ||| |||||||||||||||||      ||||   
seq2  GTCAGTGGGGGACA--TCA-CTTCTGACTAAAACATG-----CAGACAGA  1127

seq1  ATTCTTTTCCATGTGCAAATATCTAGAAATG  1181
      |||||||| |||| || ||  ||||||||||
seq2  ATTCTTTT-CATGGGCCAAATTCTAGAAATG  1157

seq1: chr17_29126044_29127207
seq2: B6Ng01-154C20.g_68_1240 (reverse)

seq1  TGCACCCC--ATGTAAGC-AGTGCC-TGAGGAAG--CCAAAAGGCAATGG  44
      ||||||||  |||||||| | |||| ||||||||  |||||   ||||| 
seq2  TGCACCCCCAATGTAAGCAATTGCCTTGAGGAAGGCCCAAAGACCAATGA  50

seq1  ATTCCTCAGGGA-CTGGAGGAAAGG-CA-GTTGCCAGCCGACTTGTGG-A  90
      |||||||| ||| ||| |||||||| || ||||||||||||| ||||| |
seq2  ATTCCTCAAGGACCTGAAGGAAAGGACAGGTTGCCAGCCGAC-TGTGGAA  99

seq1  CA-CTGGGAATTGTGAAAGAGAAGCAGATGCTCCGAACCACTTAGGC-AG  138
      || ||||||||||||||||||||| |||||||||||||||| ||||| ||
seq2  CACCTGGGAATTGTGAAAGAGAAGAAGATGCTCCGAACCAC-TAGGCAAG  148

seq1  AGGCTCACTGTACAGCCCTAGCTGGTGCCCAATTCAGAGATCTGTGTGCC  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCACTGTACAGCCCTAGCTGGTGCCCAATTCAGAGATCTGTGTGCC  198

seq1  TCTGACTCCTGCATGCTGACTTAAAACCATGGGCCACAATACCCAAGTGA  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCCTGCATGCTGACTTAAAACCATGGGCCACAATACCCAAGTGA  248

seq1  TCTGTTTATTGTATGTGCATGAGTCTGTCTGTGTGTAGGTATATGTGTGA  288
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTG-TTATTGTATGTGCATGAGTCTGTCTGTGTGTAGGTATATGTGTGA  297

seq1  GTGCAGATACTCAAGGAGTCCAAAAGAGGGTCTCCGATCCCGCGGAACTA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGATACTCAAGGAGTCCAAAAGAGGGTCTCCGATCCCGCGGAACTA  347

seq1  GAGCTGTGTGCAGTTGTGAGTCCCCTGGTGGGTCCTGGAAACAGAGCTCA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGTGCAGTTGTGAGTCCCCTGGTGGGTCCTGGAAACAGAGCTCA  397

seq1  GTCAGGTCCTCTGCAAGAGCAGTGAGTGCCCTAACCACTGACCCAAGGCT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTCCTCTGCAAGAGCAGTGAGTGCCCTAACCACTGACCCAAGGCT  447

seq1  CGGGCTGTTAAATTCTTTCGAAAATGTTTTATTAGGAAAAAAGTTTTCTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTGTTAAATTCTTTCGAAAATGTTTTATTAGGAAAAAAGTTTTCTT  497

seq1  TCTCTATTTTTTTTTCATTTTTTTCTGACAGGATCTATGTAGTCCTGAAG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTTTTTTTTCATTTTTTTCTGACAGGATCTATGTAGTCCTGAAG  547

seq1  CTCACTATGGAGAAAAGGCCCCAAACTCACAGAGAGCCATCTGCCTCTGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTATGGAGAAAAGGCCCCAAACTCACAGAGAGCCATCTGCCTCTGA  597

seq1  CTCCTAGGTGCTGGGATTAAAGACCTAAGCTACTATGTCCAGCCTATTTT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGGTGCTGGGATTAAAGACCTAAGCTACTATGTCCAGCCTATTTT  647

seq1  CCAATTTTTTAAAAGAATTCAATTATTTTTAATTAAAGTGAATGTGTCTG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTTTTAAAAGAATTCAATTATTTTTAATTAAAGTGAATGTGTCTG  697

seq1  TAAGTGGGCACTGTATTCTAAAAGTGCAGTAAGGGCTTTTAACCAATAAG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGGCACTGTATTCTAAAAGTGCAGTAAGGGCTTTTAACCAATAAG  747

seq1  CCATCTCTCTAGCACCATTTTCCCAGTGCTTTTAAAGAGAAAATTGTACT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTCTAGCACCATTTTCCCAGTGCTTTTAAAGAGAAAATTGTACT  797

seq1  GTGAAAAGAAAACTAATGGTCTATTAAAAAGGAAAACCTCCTGGCAAGCT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAGAAAACTAATGGTCTATTAAAAAGGAAAACCTCCTGGCAAGCT  847

seq1  CCTGGGCATTCTCTCCTTTCCCCCAAGATACCTAAGTTTTGTGGGGTTTT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCATTCTCTCCTTTCCCCCAAGATACCTAAGTTTTGTGGGGTTTT  897

seq1  GTTCTCTTACTGCAATGCCAAGTCAAAGAGCATGCTCCTGTTCCTTCTCC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTACTGCAATGCCAAGTCAAAGAGCATGCTCCTGTTCCTTCTCC  947

seq1  CAGGTCCAAAACTCCATTTAATTTACTGTCCTTAGATGGAGGACATACTA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCAAAACTCCATTTAATTTACTGTCCTTAGATGGAGGACATACTA  997

seq1  GATATTAAACTGCTAAGAGCAGATACTACACCTGATCTCAGTCAAAAAGA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAAACTGCTAAGAGCAGATACTACACCTGATCTCAGTCAAAAAGA  1047

seq1  CTGAGAAGTGGTTTTTCCCCTATGTCTTTCTGCATTTTGTCTTTCTAATC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGTGGTTTTTCCCCTATGTCTTTCTGCATTTTGTCTTTCTAATC  1097

seq1  AAGTACCATGTGCTTTTTCTTGAACAGGGAGCATTTTGAACAACACTTCC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCATGTGCTTTTTCTTGAACAGGGAGCATTTTGAACAACACTTCC  1147

seq1  TTATTCTCAAGGGCTAACTGGAATTC  1164
      ||||||||||||||||||||||||||
seq2  TTATTCTCAAGGGCTAACTGGAATTC  1173