BAC Information

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BAC

Clone NameB6Ng01-154F19
Chromosome17 (Build37)
Map Location 15,808,793 - 15,970,179
singlet/doubletdoublet
Overlap gene5830433I10Rik, Chd1, Rgmb, LOC100041365
Upstream geneThbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775
Downstream geneEif3s6-ps3, LOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154F19.bB6Ng01-154F19.g
ACCDH949428DH949429
length9881,102
definitionDH949428|Mus musculus domesticus DNA, BAC clone: B6Ng01-154F19, 5' end.DH949429|Mus musculus domesticus DNA, BAC clone: B6Ng01-154F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,969,188 - 15,970,179)(15,808,793 - 15,809,905)
sequence
gaattctctaagtaccgtagaaaattctgtaagaatactttagggtttac
atttttaaaaaaaatgggggaaaatcgacctgtggactaaaatctaccat
aacctggtgcagtgtattcagataccccacaaagcacaaatctggaaaac
tgacatgtgccaccaaccggcatctgtgtgtgacagttaccaactttcta
cagttttcttaatcaaaaatggtctaggtaacctgtaaagaaggattaga
aaattcagatgatctaagaaaagaaagaaagaaagacagacagactagca
cgtcatgaaatttcagcctttttgtgcattaatttcaaaaactctacaag
gaaataaggcacagatgaccacagaggggactaaagcccaagctttcaaa
gtgggacaaaaaaaaaaaaaaaaaacgagactgtggaaaagttaaatgta
tcatttaaataaatacaagctgaggcgatttgcataacaattggcatcca
tttttgcatcggccagtattatggaaaaggggattgtgatgatttgtgtc
tgtgtttatgtgaagtctagctagctgtgcagaggagtgaagaactgggc
tgcatcagaagtcgccttctgagctgactctctggatttcctttgaactc
gttttcaacattatgctatgcagcagcttgtctttgtgttggtagaagga
gaaggaaaaacacaggagactaggctttagtttctaaattaaagctctgc
tgggctgattgctcaagtggcttttcaaaggcaaaacaagtggggacatt
aaaattcctgtttctgtaggaccactaactgagcccaacaccaccaccgc
caccttttgttgttgttgttgttgtgtgtggtggtggttgtctcatacca
aatagagcaggttccagtgtatcttacagacactttaaacggactcaagg
tattttttgtttggtttggttggtttggtttggttggg
gaattccagaagattaagacagggagatctctgagttcaagatcatctgg
gattaaaggcatggtggcacacacctttaatctgggccacaccttctgct
ggaggcctacataaggacattggaagaaggaagatttactctctttcctt
cacttgcttgccttgtgggactgaacaactgctggatccttggacttcca
ttcacagctgctgctgaccacagttgggagctggactacagactgtaagt
catcaataacttcccttactatatagagactacccataagttctgtgact
ctagagaaccctgactagtacaggactcttaagaaagatcttaaatctgc
atcatggatgacacaaggcttgaggtgttgttgttgttgctgctgctgtt
gttgttgttgtctgcttcatagtttcacacttttatataaagaattttag
tcactttctcacacaacactcattcctttcttctatcctcctctccctca
ctggtgcccttcttccaaacacctccttgagtgacagttttaataaagga
cttgtattttcttgacacctaaaagacattctgaacttaagaatgaagga
aatctaagccaggcttgttaggtgtgcacctaagatgttggtattcaggg
ggctgaaacaagactatagtgaagcagaggccagtctgggataccttgtt
ttaaaaaataaaaattttaaatcacctaatctgatctatgttttattatt
aaataccaagcttattaaaaagtctccacaacaacccgtatggtatggtc
gctaacttcctgattaccactccaccctttttttcctgaagttcccagac
atgtttggggacatcctccccatgcgtggtatttcattgattggaatttg
tatttgttcataagtctttccaaatggcagtggaaactcattaaacagtt
tacatcagactataatagcaaatgttctaggagctagtattactacaaat
gagttacacactaaacacttttgtaacttaaaaataattcccgttagcct
ctcccagtgaacaccatccaggatttgaaactaaaactctgttctgtaca
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_15969188_15970179
seq2: B6Ng01-154F19.b_48_1035 (reverse)

seq1  CCAAACCAAACCAAACCAAACCAAACCAAAC-AAAAATACCTTGAGTCCG  49
      || |||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  CCCAACCAAACCAAACC-AACCAAACCAAACAAAAAATACCTTGAGTCCG  49

seq1  TTTAAGGTGTCTGTAAGATACACTGGAACCTGCTCTATTTGGTATTGAGA  99
      ||||| |||||||||||||||||||||||||||||||||||||| |||| 
seq2  TTTAAAGTGTCTGTAAGATACACTGGAACCTGCTCTATTTGGTA-TGAG-  97

seq1  ACAACAACAACAACAACAACAACAACAACAACAACAAAAGGTGGCGGTGG  149
      ||||| || || |||   ||||||||||||||||||||||||||||||||
seq2  ACAACCACCACCACA--CACAACAACAACAACAACAAAAGGTGGCGGTGG  145

seq1  TGGTGTTGGGCTCAGTTAGTGGTCCTACAGAAACAGGAATTTTAATGTCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTGGGCTCAGTTAGTGGTCCTACAGAAACAGGAATTTTAATGTCC  195

seq1  CCACTTGTTTTGCCTTTGAAAAGCCACTTGAGCAATCAGCCCAGCAGAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGTTTTGCCTTTGAAAAGCCACTTGAGCAATCAGCCCAGCAGAGC  245

seq1  TTTAATTTAGAAACTAAAGCCTAGTCTCCTGTGTTTTTCCTTCTCCTTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTAGAAACTAAAGCCTAGTCTCCTGTGTTTTTCCTTCTCCTTCT  295

seq1  ACCAACACAAAGACAAGCTGCTGCATAGCATAATGTTGAAAACGAGTTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACACAAAGACAAGCTGCTGCATAGCATAATGTTGAAAACGAGTTCA  345

seq1  AAGGAAATCCAGAGAGTCAGCTCAGAAGGCGACTTCTGATGCAGCCCAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATCCAGAGAGTCAGCTCAGAAGGCGACTTCTGATGCAGCCCAGT  395

seq1  TCTTCACTCCTCTGCACAGCTAGCTAGACTTCACATAAACACAGACACAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTCCTCTGCACAGCTAGCTAGACTTCACATAAACACAGACACAA  445

seq1  ATCATCACAATCCCCTTTTCCATAATACTGGCCGATGCAAAAATGGATGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCACAATCCCCTTTTCCATAATACTGGCCGATGCAAAAATGGATGC  495

seq1  CAATTGTTATGCAAATCGCCTCAGCTTGTATTTATTTAAATGATACATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTTATGCAAATCGCCTCAGCTTGTATTTATTTAAATGATACATTT  545

seq1  AACTTTTCCACAGTCTCGTTTTTTTTTTTTTTTTTTGTCCCACTTTGAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCCACAGTCTCGTTTTTTTTTTTTTTTTTTGTCCCACTTTGAAA  595

seq1  GCTTGGGCTTTAGTCCCCTCTGTGGTCATCTGTGCCTTATTTCCTTGTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGCTTTAGTCCCCTCTGTGGTCATCTGTGCCTTATTTCCTTGTAG  645

seq1  AGTTTTTGAAATTAATGCACAAAAAGGCTGAAATTTCATGACGTGCTAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTGAAATTAATGCACAAAAAGGCTGAAATTTCATGACGTGCTAGT  695

seq1  CTGTCTGTCTTTCTTTCTTTCTTTTCTTAGATCATCTGAATTTTCTAATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTCTTTCTTTCTTTCTTTTCTTAGATCATCTGAATTTTCTAATC  745

seq1  CTTCTTTACAGGTTACCTAGACCATTTTTGATTAAGAAAACTGTAGAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTACAGGTTACCTAGACCATTTTTGATTAAGAAAACTGTAGAAAG  795

seq1  TTGGTAACTGTCACACACAGATGCCGGTTGGTGGCACATGTCAGTTTTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAACTGTCACACACAGATGCCGGTTGGTGGCACATGTCAGTTTTCC  845

seq1  AGATTTGTGCTTTGTGGGGTATCTGAATACACTGCACCAGGTTATGGTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGTGCTTTGTGGGGTATCTGAATACACTGCACCAGGTTATGGTAG  895

seq1  ATTTTAGTCCACAGGTCGATTTTCCCCCATTTTTTTTAAAAATGTAAACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTCCACAGGTCGATTTTCCCCCATTTTTTTTAAAAATGTAAACC  945

seq1  CTAAAGTATTCTTACAGAATTTTCTACGGTACTTAGAGAATTC  992
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTATTCTTACAGAATTTTCTACGGTACTTAGAGAATTC  988

seq1: chr17_15808793_15809905
seq2: B6Ng01-154F19.g_66_1167

seq1  GAATTCCAGAAGATTAAGACAGGGAGATCTCTGAGTTCAAGATCATCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGATTAAGACAGGGAGATCTCTGAGTTCAAGATCATCTGG  50

seq1  GATTAAAGGCATGGTGGCACACACCTTTAATCTGGGCCACACCTTCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGCATGGTGGCACACACCTTTAATCTGGGCCACACCTTCTGCT  100

seq1  GGAGGCCTACATAAGGACATTGGAAGAAGGAAGATTTACTCTCTTTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCTACATAAGGACATTGGAAGAAGGAAGATTTACTCTCTTTCCTT  150

seq1  CACTTGCTTGCCTTGTGGGACTGAACAACTGCTGGATCCTTGGACTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCTTGCCTTGTGGGACTGAACAACTGCTGGATCCTTGGACTTCCA  200

seq1  TTCACAGCTGCTGCTGACCACAGTTGGGAGCTGGACTACAGACTGTAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGCTGCTGCTGACCACAGTTGGGAGCTGGACTACAGACTGTAAGT  250

seq1  CATCAATAACTTCCCTTACTATATAGAGACTACCCATAAGTTCTGTGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATAACTTCCCTTACTATATAGAGACTACCCATAAGTTCTGTGACT  300

seq1  CTAGAGAACCCTGACTAGTACAGGACTCTTAAGAAAGATCTTAAATCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAACCCTGACTAGTACAGGACTCTTAAGAAAGATCTTAAATCTGC  350

seq1  ATCATGGATGACACAAGGCTTGAGGTGTTGTTGTTGTTGCTGCTGCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGATGACACAAGGCTTGAGGTGTTGTTGTTGTTGCTGCTGCTGTT  400

seq1  GTTGTTGTTGTCTGCTTCATAGTTTCACACTTTTATATAAAGAATTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTGTCTGCTTCATAGTTTCACACTTTTATATAAAGAATTTTAG  450

seq1  TCACTTTCTCACACAACACTCATTCCTTTCTTCTATCCTCCTCTCCCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTCTCACACAACACTCATTCCTTTCTTCTATCCTCCTCTCCCTCA  500

seq1  CTGGTGCCCTTCTTCCAAACACCTCCTTGAGTGACAGTTTTAATAAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCCCTTCTTCCAAACACCTCCTTGAGTGACAGTTTTAATAAAGGA  550

seq1  CTTGTATTTTCTTGACACCTAAAAGACATTCTGAACTTAAGAATGAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATTTTCTTGACACCTAAAAGACATTCTGAACTTAAGAATGAAGGA  600

seq1  AATCTAAGCCAGGCTTGTTAGGTGTGCACCTAAGATGTTGGTATTCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAGCCAGGCTTGTTAGGTGTGCACCTAAGATGTTGGTATTCAGGG  650

seq1  GGCTGAAACAAGACTATAGTGAAGCAGAGGCCAGTCTGGGATACCTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAACAAGACTATAGTGAAGCAGAGGCCAGTCTGGGATACCTTGTT  700

seq1  TTAAAAAATAAAAATTTTAAATCACCTAATCTGATCTATGTTTTATTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATAAAAATTTTAAATCACCTAATCTGATCTATGTTTTATTATT  750

seq1  AAATACCAAGCTTATTAAAAAGTCTCCACAACAACCCGTATGGTATGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCAAGCTTATTAAAAAGTCTCCACAACAACCCGTATGGTATGGTC  800

seq1  GCTAACTTCCTGATTACCACTCCACCCTTTTTTTCCTGAAGTTCCCAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTTCCTGATTACCACTCCACCCTTTTTTTCCTGAAGTTCCCAGAC  850

seq1  ATGTTTGGGGACATCCTCCCCATGCGTGGTATTTCATTGATTGGAATTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGGGGACATCCTCCCCATGCGTGGTATTTCATTGATTGGAATTTG  900

seq1  TATTTGTTCATAAGTCTTTCCAAATGGCAGTGGAAACTCATTAAACAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTCATAAGTCTTTCCAAATGGCAGTGGAAACTCATTAAACAGTT  950

seq1  TACATCAGACTATAAATAGCAAATGTTCTAGGAGCTAGTATTACTTCCAA  1000
      ||||||||||||| |||||||||||||||||||||||||||||| | |||
seq2  TACATCAGACTAT-AATAGCAAATGTTCTAGGAGCTAGTATTAC-TACAA  998

seq1  ATGAAGTTACACACTAAACACTTTTGTAAACATAAAAATAAATCCCGTTA  1050
      ||| ||||||||||||||||||||||| ||| ||||||||| ||||||||
seq2  ATG-AGTTACACACTAAACACTTTTGT-AACTTAAAAATAATTCCCGTTA  1046

seq1  GCCTTCTTCCCAGTGAACAACATCCAAGATTTTGATACCTAAAACATCTG  1100
      ||||   |||||||||||| |||||| || ||||| | ||||||| ||||
seq2  GCCT--CTCCCAGTGAACACCATCCAGGA-TTTGA-AACTAAAAC-TCTG  1091

seq1  TTCCTGTTACATA  1113
      || ||| ||||||
seq2  TT-CTG-TACATA  1102