BAC Information

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BAC

Clone NameB6Ng01-154P04
Chromosome17 (Build37)
Map Location 42,672,786 - 42,862,548
singlet/doubletdoublet
Overlap geneOpn5, Gpr115, Gpr111
Upstream geneLOC627626
Downstream geneEG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110, Gpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154P04.bB6Ng01-154P04.g
ACCDH949858DH949859
length1,113929
definitionDH949858|Mus musculus domesticus DNA, BAC clone: B6Ng01-154P04, 5' end.DH949859|Mus musculus domesticus DNA, BAC clone: B6Ng01-154P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,861,432 - 42,862,548)(42,672,786 - 42,673,346)
sequence
gaattcatatggacctatttgagcaacttcggatgaaatgaaagacataa
aaatagctgtgcatttactgggaatcatgtgtccctctgccttgacgttt
agaagctatgggcggtatgtttgcccttttgtgtaagagccataaatgta
ctaaaaaaagctgaaagatgggctgcaaatattttgcacagtcagttttt
tttttgtgtgtgaaattcctgctagattcattttttttagagcaggaaac
atgaattaaaaaatcaatacaatttcaccattttatttaaattatttatg
gtattattactaatgatgcatgattgggtggatgaattttttattattta
aatgcattttatacatcaaacatattaataatattgagtattttgagaat
caaataatacatacaactttgttcaacttttatattcatatcctttcata
ccctaaaatatcattaatgaatatttaatactatccataaccgaggatcc
tatatctaatgttgaatactaaattgtttcaagacatacacaatattctt
tggtagttaagcatagtaaaaaagcataaaatattaaaaatgaatcatta
caaaatatatccaaaagcctttatatgataccacctgacataactgagag
actatttaaaacacatcatatttctatgtacattgtctaacaatcagttt
acttataaaagattatcagtgttcctaggagagaacttattttatcagta
agtataatttaaaaatttcaaagtagcaaaaactctttgaagttaaacat
taagaaaatgctaatttcaagcacagtgagaaaaattatcaataatattt
ccatgatgtagatcatagaacatgattttaatatttttcaactgttgatg
ttcaacaaacagaatagttattttattacacactttgttggttatgttcc
ctttttcatttctgattttaataatttgggtattggtctcgtgccctctg
gttagtctggctagggtttatctatcttgttgatttttctcaaaacacag
ctctgggtttgttgaatctttggtatagtctttggttctaattgggtgat
tcagccctgagtt
gaattccttttgtcacagttctcacagacagatgaagtcaagacagctct
taggcatagtttaagaaaacaggccacaatcaacagattgggaaaaaatc
ttttccaatcctaaatccgataagggactaatatatatatggaactcaaa
aagatggactccagaaaaccaaataaccctattaaagaatgagatacagt
gctaaacaaagatttctcaactgagaatggctgtgaagcacctgaaaata
tgttcaacatccttaatcatcagggaaatgcaaataaaaacaaccctgag
attccgcctcacaccagtaagaatggctaaaatcaaaaattcaggtgaca
gcagatgctggtgagtatgtggtgaaagaggaacactcctccgttgctgg
tgggattgaaagctggtacaaccactctggaaatcagtctgacagttcct
cagaaaactggacatagtactaccagagaatcccgcaatacctcagaaga
tgtcccaaccggtaagaaggacacatgctccactatgttcatagcagcct
tatttataatagccagaagctggaaagaacccaaatgtccctcagcagag
gaatggatacgggaaatgtggtacatttacacaatagctactatccagct
attaaaaacaattataaaattttataacaatttataaaattctttggcaa
atggatggatctggaggatatcatcctgagtgaggtaaccccatcacaaa
agaacacatatgatatggattcactgataagtgcatattatcccagaaat
ttagaatatccaagatacaatttgcaaacacataaaactcaagaagacag
aaagaccaaagtgtggatacttagtttcttcttagaatgaggaacaaaat
actcatgggaagagtaacagggacaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_42861432_42862548
seq2: B6Ng01-154P04.b_47_1159 (reverse)

seq1  AACTCAGGGCTGAAATCAACCAAATAGAAACCAAAAGAACTATA-CAAAG  49
      |||||||||||| ||||| |||| ||| |||||||   |||||| |||||
seq2  AACTCAGGGCTG-AATCACCCAATTAG-AACCAAA--GACTATACCAAAG  46

seq1  AATCAACAAAACCAGGAGCTGGTGTTTTGAG-AAAATCAACAAGATAGAT  98
      | |||||||| ||| ||||| |||||||||| ||||||||||||||||||
seq2  ATTCAACAAACCCA-GAGCT-GTGTTTTGAGAAAAATCAACAAGATAGAT  94

seq1  AAACCCTTAGCCAGACTAACCAGAGGGCACCGAGA-CAATATCCAAATTA  147
      |||||| |||||||||||||||||||||| ||||| ||||| ||||||||
seq2  AAACCC-TAGCCAGACTAACCAGAGGGCA-CGAGACCAATACCCAAATTA  142

seq1  ATAAAATCAGAAATGAAAAAGGGAAACATAA-CAACAAAGTGTGTAATAA  196
       |||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  TTAAAATCAGAAATGAAAAAGGG-AACATAACCAACAAAGTGTGTAATAA  191

seq1  AATAACTATTCTGTTTGTTGAACATCAACAGTTG-AAAATATTAAAATCA  245
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATAACTATTCTGTTTGTTGAACATCAACAGTTGAAAAATATTAAAATCA  241

seq1  TGTTCTATGATCTACATCATGGAAATATTATTGATAATTTTTCTCACTGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTATGATCTACATCATGGAAATATTATTGATAATTTTTCTCACTGT  291

seq1  GCTTGAAATTAGCATTTTCTTAATGTTTAACTTCAAAGAGTTTTTGCTAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAATTAGCATTTTCTTAATGTTTAACTTCAAAGAGTTTTTGCTAC  341

seq1  TTTGAAATTTTTAAATTATACTTACTGATAAAATAAGTTCTCTCCTAGGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATTTTTAAATTATACTTACTGATAAAATAAGTTCTCTCCTAGGA  391

seq1  ACACTGATAATCTTTTATAAGTAAACTGATTGTTAGACAATGTACATAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGATAATCTTTTATAAGTAAACTGATTGTTAGACAATGTACATAGA  441

seq1  AATATGATGTGTTTTAAATAGTCTCTCAGTTATGTCAGGTGGTATCATAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATGTGTTTTAAATAGTCTCTCAGTTATGTCAGGTGGTATCATAT  491

seq1  AAAGGCTTTTGGATATATTTTGTAATGATTCATTTTTAATATTTTATGCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTTTTGGATATATTTTGTAATGATTCATTTTTAATATTTTATGCT  541

seq1  TTTTTACTATGCTTAACTACCAAAGAATATTGTGTATGTCTTGAAACAAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTATGCTTAACTACCAAAGAATATTGTGTATGTCTTGAAACAAT  591

seq1  TTAGTATTCAACATTAGATATAGGATCCTCGGTTATGGATAGTATTAAAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATTCAACATTAGATATAGGATCCTCGGTTATGGATAGTATTAAAT  641

seq1  ATTCATTAATGATATTTTAGGGTATGAAAGGATATGAATATAAAAGTTGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTAATGATATTTTAGGGTATGAAAGGATATGAATATAAAAGTTGA  691

seq1  ACAAAGTTGTATGTATTATTTGATTCTCAAAATACTCAATATTATTAATA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTTGTATGTATTATTTGATTCTCAAAATACTCAATATTATTAATA  741

seq1  TGTTTGATGTATAAAATGCATTTAAATAATAAAAAATTCATCCACCCAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGATGTATAAAATGCATTTAAATAATAAAAAATTCATCCACCCAAT  791

seq1  CATGCATCATTAGTAATAATACCATAAATAATTTAAATAAAATGGTGAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATCATTAGTAATAATACCATAAATAATTTAAATAAAATGGTGAAA  841

seq1  TTGTATTGATTTTTTAATTCATGTTTCCTGCTCTAAAAAAAATGAATCTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTGATTTTTTAATTCATGTTTCCTGCTCTAAAAAAAATGAATCTA  891

seq1  GCAGGAATTTCACACACAAAAAAAAAACTGACTGTGCAAAATATTTGCAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAATTTCACACACAAAAAAAAAACTGACTGTGCAAAATATTTGCAG  941

seq1  CCCATCTTTCAGCTTTTTTTAGTACATTTATGGCTCTTACACAAAAGGGC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTTTCAGCTTTTTTTAGTACATTTATGGCTCTTACACAAAAGGGC  991

seq1  AAACATACCGCCCATAGCTTCTAAACGTCAAGGCAGAGGGACACATGATT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATACCGCCCATAGCTTCTAAACGTCAAGGCAGAGGGACACATGATT  1041

seq1  CCCAGTAAATGCACAGCTATTTTTATGTCTTTCATTTCATCCGAAGTTGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAAATGCACAGCTATTTTTATGTCTTTCATTTCATCCGAAGTTGC  1091

seq1  TCAAATAGGTCCATATGAATTC  1117
      ||||||||||||||||||||||
seq2  TCAAATAGGTCCATATGAATTC  1113

seq1: chr17_42672786_42673346
seq2: B6Ng01-154P04.g_68_628

seq1  GAATTCCTTTTGTCACAGTTCTCACAGACAGATGAAGTCAAGACAGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTGTCACAGTTCTCACAGACAGATGAAGTCAAGACAGCTCT  50

seq1  TAGGCATAGTTTAAGAAAACAGGCCACAATCAACAGATTGGGAAAAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATAGTTTAAGAAAACAGGCCACAATCAACAGATTGGGAAAAAATC  100

seq1  TTTTCCAATCCTAAATCCGATAAGGGACTAATATATATATGGAACTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAATCCTAAATCCGATAAGGGACTAATATATATATGGAACTCAAA  150

seq1  AAGATGGACTCCAGAAAACCAAATAACCCTATTAAAGAATGAGATACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGACTCCAGAAAACCAAATAACCCTATTAAAGAATGAGATACAGT  200

seq1  GCTAAACAAAGATTTCTCAACTGAGAATGGCTGTGAAGCACCTGAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAACAAAGATTTCTCAACTGAGAATGGCTGTGAAGCACCTGAAAATA  250

seq1  TGTTCAACATCCTTAATCATCAGGGAAATGCAAATAAAAACAACCCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAACATCCTTAATCATCAGGGAAATGCAAATAAAAACAACCCTGAG  300

seq1  ATTCCGCCTCACACCAGTAAGAATGGCTAAAATCAAAAATTCAGGTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCGCCTCACACCAGTAAGAATGGCTAAAATCAAAAATTCAGGTGACA  350

seq1  GCAGATGCTGGTGAGTATGTGGTGAAAGAGGAACACTCCTCCGTTGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGCTGGTGAGTATGTGGTGAAAGAGGAACACTCCTCCGTTGCTGG  400

seq1  TGGGATTGAAAGCTGGTACAACCACTCTGGAAATCAGTCTGACAGTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTGAAAGCTGGTACAACCACTCTGGAAATCAGTCTGACAGTTCCT  450

seq1  CAGAAAACTGGACATAGTACTACCAGAGAATCCCGCAATACCTCAGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACTGGACATAGTACTACCAGAGAATCCCGCAATACCTCAGAAGA  500

seq1  TGTCCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCT  550

seq1  TATTTATAATA  561
      |||||||||||
seq2  TATTTATAATA  561