BAC Information

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BAC

Clone NameB6Ng01-155F09
Chromosome1 (Build37)17 (Build37)
Map Location 28,779,928 - 28,780,65689,782,872 - 89,783,742
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040952, EG433281, EG665903
Downstream geneGm597, LOC435614, EG623924, EG433283
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155F09.bB6Ng01-155F09.g
ACCDH950148DH950149
length936111
definitionDH950148|Mus musculus domesticus DNA, BAC clone: B6Ng01-155F09, 5' end.DH950149|Mus musculus domesticus DNA, BAC clone: B6Ng01-155F09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(28,779,928 - 28,780,656)(89,782,872 - 89,783,742)
sequence
gaattcaaaatcccccccaataaaaccacttgatttatttagctttggtg
catttaaggagtttacaggggccactgggactgacttctttggagctctg
catggtagacctttacttttgattgatctgattataataccaaacagaat
tattcttgtagtatatcatctgggtaggtttcaacaggttctctgaacac
tctttatgcaagtgcttaacttccatttaattccatctcttgtaaccagg
caaaactttcagtggtggaatggggacaccaacacagccacagtacttta
taccaacaatttgtcccccacacatggtgtgcaggggtaaaacagagtgc
agaatgacaggcctagcttgagacccatgacatgagagggaggccatccc
tgattctattgataatattctgttatagttgcagacatgaaagcttacca
taaaaatcatcagagggttttactagcacctattgaaagctgatgcaaag
acttacagtcaaacattgaataaaacttggaaaatatgtggaggaggcag
ggaggattgagggtgccagaggagtcaaagacaccacaagaaaacctaca
gactcaactaacctagacccacaggggctcctaaaatctgaactgccaaa
tagaagtatgaatgggaagtacctggccctctgcacatacatttcagtta
tgtagctgggtcttcatgtaagactcctaatagcaggaacagggctgtct
ctgtgtatagtgtctacatatggatctctttcacttaactgcctgcttta
gtctcaataaaagaagataatcatagacttactgcaacttgatatgacag
ggctggttgatattcataggaggccagcccttttcttagaagaaaagaag
agggatggatggaaacggagaggaagagagagggaa
tatattttagttctcataattaaatatatacatatatgtatatacatata
tatgcatatatataaatatatatgcatagtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_28779928_28780656
seq2: B6Ng01-155F09.b_46_774

seq1  GAATTCAAAATCCCCCCCAATAAAACCACTTGATTTATTTAGCTTTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATCCCCCCCAATAAAACCACTTGATTTATTTAGCTTTGGTG  50

seq1  CATTTAAGGAGTTTACAGGGGCCACTGGGACTGACTTCTTTGGAGCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAGGAGTTTACAGGGGCCACTGGGACTGACTTCTTTGGAGCTCTG  100

seq1  CATGGTAGACCTTTACTTTTGATTGATCTGATTATAATACCAAACAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTAGACCTTTACTTTTGATTGATCTGATTATAATACCAAACAGAAT  150

seq1  TATTCTTGTAGTATATCATCTGGGTAGGTTTCAACAGGTTCTCTGAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTGTAGTATATCATCTGGGTAGGTTTCAACAGGTTCTCTGAACAC  200

seq1  TCTTTATGCAAGTGCTTAACTTCCATTTAATTCCATCTCTTGTAACCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGCAAGTGCTTAACTTCCATTTAATTCCATCTCTTGTAACCAGG  250

seq1  CAAAACTTTCAGTGGTGGAATGGGGACACCAACACAGCCACAGTACTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTTCAGTGGTGGAATGGGGACACCAACACAGCCACAGTACTTTA  300

seq1  TACCAACAATTTGTCCCCCACACATGGTGTGCAGGGGTAAAACAGAGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACAATTTGTCCCCCACACATGGTGTGCAGGGGTAAAACAGAGTGC  350

seq1  AGAATGACAGGCCTAGCTTGAGACCCATGACATGAGAGGGAGGCCATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGACAGGCCTAGCTTGAGACCCATGACATGAGAGGGAGGCCATCCC  400

seq1  TGATTCTATTGATAATATTCTGTTATAGTTGCAGACATGAAAGCTTACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTATTGATAATATTCTGTTATAGTTGCAGACATGAAAGCTTACCA  450

seq1  TAAAAATCATCAGAGGGTTTTACTAGCACCTATTGAAAGCTGATGCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCATCAGAGGGTTTTACTAGCACCTATTGAAAGCTGATGCAAAG  500

seq1  ACTTACAGTCAAACATTGAATAAAACTTGGAAAATATGTGGAGGAGGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACAGTCAAACATTGAATAAAACTTGGAAAATATGTGGAGGAGGCAG  550

seq1  GGAGGATTGAGGGTGCCAGAGGAGTCAAAGACACCACAAGAAAACCTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATTGAGGGTGCCAGAGGAGTCAAAGACACCACAAGAAAACCTACA  600

seq1  GACTCAACTAACCTAGACCCACAGGGGCTCCTAAAATCTGAACTGCCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAACTAACCTAGACCCACAGGGGCTCCTAAAATCTGAACTGCCAAA  650

seq1  TAGAAGTATGAATGGGAAGTACCTGGCCCTCTGCACATACATTTCAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTATGAATGGGAAGTACCTGGCCCTCTGCACATACATTTCAGTTA  700

seq1  TGTAGCTGGGTCTTCATGTAAGACTCCTA  729
      |||||||||||||||||||||||||||||
seq2  TGTAGCTGGGTCTTCATGTAAGACTCCTA  729

seq1: chr17_89782872_89783742
seq2: B6Ng01-155F09.g_97_181 (reverse)

seq1  CACACACACACACACACACACACACACACACAC---ACATATATATATAT  47
      |||||||||||||||||||||||||||||||||    ||||||||| |||
seq2  CACACACACACACACACACACACACACACACACTATGCATATATATTTAT  50

seq1  ATATATGCATATTGCATGCAATTGTGTGTATTTGTGTGTAAACAAAAGTA  97
      ||||||||||||       |  ||| | ||  | | |||| |        
seq2  ATATATGCATAT-------ATATGTATATACATATATGTATA--------  85

seq1  TGTATGCATCAGCTTTCATGCAGTTTGAACTTTGAAGGTTTGCTATTCCT  147
                                                        
seq2  --------------------------------------------------  85

seq1  TTTCTATAGACATCCATTCCCACAATGCCACACTCCCAAACCTTAAGCTT  197
                                                        
seq2  --------------------------------------------------  85

seq1  TTTCCCTTGGCAATTTCATTTTTCAAATTGAGAAATTAAAACAACAGTGC  247
                                                        
seq2  --------------------------------------------------  85

seq1  ACAGATTGGTCTACTCTTTCCTCATCATCTACCCCTCCTCCCAGAAACTC  297
                                                        
seq2  --------------------------------------------------  85

seq1  TGTGCTCTTCTTTGAGCCTTTAGGCAAAAGGTAAACTGCTCCAAATTCTA  347
                                                        
seq2  --------------------------------------------------  85

seq1  TTCTTTTCTTGATTACTAGAAGCTAGAAAGTTACTTAAATGCCATCATAG  397
                                                        
seq2  --------------------------------------------------  85

seq1  GTATTTTAGTCTCATGAAATCAAAGCTTTGGAGACCATAAAATGTACATA  447
                                                        
seq2  --------------------------------------------------  85

seq1  ATCATATGCACTCTCATCAAAGGAAAAAACACAACTGTTTAGAGTCAACA  497
                                                        
seq2  --------------------------------------------------  85

seq1  CACACACATTTATAAATACCATGAACATGCAAAAAAATATTAACTGCCTA  547
                                                        
seq2  --------------------------------------------------  85

seq1  AAGCACTTGTATAAATTAATCTGCCTCTCTATGTTTTAGTTCCATGAAAT  597
                                                        
seq2  --------------------------------------------------  85

seq1  TTTATTACCTCTTCATTTGGCAAGGAGTTTGTAAAATTATTTTCTATTGG  647
                                                        
seq2  --------------------------------------------------  85

seq1  TAAAATAGAAAGACAAGTGTTTCCTCTGAGTTGTTTTTTTATTACAATTA  697
                                                        
seq2  --------------------------------------------------  85

seq1  CAGTTATTTTTAATATATAAATTGTGTGACTTTACAAAGAACTGCAATTA  747
                                                        
seq2  --------------------------------------------------  85

seq1  CTGCTTCTAATATTGTGCTATAAACACATACACACACACTCACATATACA  797
                                                        
seq2  --------------------------------------------------  85

seq1  TGTACACAAACACATACTCATACACATGTGCACACACACTCACATATATA  847
                                                        
seq2  --------------------------------------------------  85

seq1  TGTGTATACACACATATATGTATA  871
                              
seq2  ------------------------  85