BAC Information

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BAC

Clone NameB6Ng01-156F14
Chromosome17 (Build37)
Map Location 19,424,020 - 19,512,481
singlet/doubletdoublet
Overlap geneLOC627476, EG665371, EG665376
Upstream geneEG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070, Vmn2r-ps115, Vmn2r-ps117, LOC100042183, EG627367, EG224552, LOC665344, LOC627466
Downstream geneEG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156F14.bB6Ng01-156F14.g
ACCDH950876DH950877
length1,1291,083
definitionDH950876|Mus musculus domesticus DNA, BAC clone: B6Ng01-156F14, 5' end.DH950877|Mus musculus domesticus DNA, BAC clone: B6Ng01-156F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,511,346 - 19,512,481)(19,424,020 - 19,425,098)
sequence
gaattcagaaatatccaccagtgtcttgttctagactactgggactaaag
tcttgtacaagcatatttgcctgctggatttctttattttcttatcacat
atgcctagatctcttcataggaaacctgtagagattctcttgattcactc
tcttaccctccatatgatcactggattacaggcctgtattcatattcttt
tggaaggtatgaactcacttcctcacaattggtgttttctactctctgaa
acatctctttttctatttaattttatgttttgttgaaaaacaccccttaa
tctgaaaggctccaaatccacacctacaaaataatattacttaatgtatc
tgtcaaagaggatcacagaaaattaaagtcattaagttttcattatatac
tttttttcttctcccccagtactaagaatttaggtcaaaagctgtggaaa
gaaactaagaacgagaggtaaactataatctcatggaaataataaattct
caagaaaagatggaagttatatttagggcatcaccctaaatataataaca
tgcaatgatatgtgaatgttcaagtgaatcaaaatactagcaagaaaaat
ggaggtcagcatgaagtccaaaccctatctaagtaggaattcttagttag
agatttattgctgtgaggagacataatgagcattgctattctcataaagg
aaaacatataactggagctagcttataatttcagatatttagtctataat
tatcatggtgggaaacatgactgtattcctacagaaatggtttaaaaatt
aatctgacaattttatatcattatccacaggcaccaaaagtagaaactga
gtgacactaagtagacttgttcttctcagaagtttaactccaccaacaac
gtgacacactttgtctaacaagtccatgcctactccaacaaagatacata
tctcaatagtgccacaaagcatggtcaaacatctaaacaaaatagactaa
ggagcattctctacaacactgcattctaatccttgaactgatagtgttgt
agcataaaaatagtgcaaaatggaatttgtctactgatttcccataacta
aaatagcctcaaggtttgttgaagttcaa
gaattcatttttttccctaaggttattgttaacctctggttcttagttac
tttccacagcttttgccataaatttttagcactgggggataagaaaaatt
atataatgaaaaattagtgacattttttttcagtgatccactttaacagg
tacattaagtaagactattttgtaagtgtggattttgagcctttcagagt
aaagggtatttttcaacaaaccgtataattaaacaggtaaaaagatgttt
cagagagtagaaaacaccaactgtgatgaactgaattcatacctcccaaa
ataatatgagtacatgcctgtaatccagcgatcatacggagggtaagaga
gtgaatcaggagaatctctacaggtttcagatgaagagttctaggtatat
gtgagaagaaaataaagaaatccagcaggcaaatatactagaacaagact
ttattcctagtagtttagaaaaagagactggtgggtatttctgaattcaa
gatcaattgtgatttgcacaacttatagtcaagtcatagacactgtgtta
ctgagtaaaccaaggaagcaactaaacattaaatgaatgaaatgcataaa
tgcataagtgcattgatatatatatagatctgtacattctaagagacatg
catacatgtaatcacacatgaaaacatcataaatacaatgataaaaatat
atagggcatggtactgtactatttaatgtcatctattcacatttagaagc
agtctttccttagtttctctaagaaatagtaaatccatgctgcaatactc
aaaatattatatcagagaaatagttcccatgggtcacatgccatgaaatg
aatttcaaagatttttaaattaagatattttcttttaaaacttgttaggt
agatagtaaaatagtgagttttcacatgtttaagatgacagaagccaaga
ttctacattttcaaaagatgggaatatttggtgcaaatgatttcttgact
ggtaaacaaaaatgtataaaggataatctatgaaataataaataatttat
tgctttggagaatcataaataattgagtagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_19511346_19512481
seq2: B6Ng01-156F14.b_47_1175 (reverse)

seq1  TTGGACTTCAAACAAACTTGAGGCTATTTTAGTTTATGGGAAATTAAAGT  50
      ||| |||||||  || |||||||||||||||| |||||||||||   |||
seq2  TTGAACTTCAACAAACCTTGAGGCTATTTTAG-TTATGGGAAAT--CAGT  47

seq1  AGACCAAATCCATTTTGCACTATTTTATGGCTACAACACTATCAGTTCAA  100
      |||| || ||||||||||||||||||   |||||||||||||||||||||
seq2  AGACAAATTCCATTTTGCACTATTTTTATGCTACAACACTATCAGTTCAA  97

seq1  GGAATAGAATGCAGTGGTTTGTAGAGGAATGGCTCCTTAGTCTATTTTGT  150
      ||| ||||||||||||  ||||||| |||| |||||||||||||||||||
seq2  GGATTAGAATGCAGTG--TTGTAGA-GAAT-GCTCCTTAGTCTATTTTGT  143

seq1  TTAGATGTTTGACCATGCTTTGTGGCACTATTGGGATATGTATCTTTGTT  200
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTAGATGTTTGACCATGCTTTGTGGCACTATTGAGATATGTATCTTTGTT  193

seq1  GGAGTAGGCATGGACTTGTTAGACAAAGTGTGTCACGTTGTTGGTGGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGGCATGGACTTGTTAGACAAAGTGTGTCACGTTGTTGGTGGAGT  243

seq1  TAAACTTCTGAGAAGAACAAGTCTACTTAGTGTCACTCAGTTTCTACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTCTGAGAAGAACAAGTCTACTTAGTGTCACTCAGTTTCTACTTT  293

seq1  TGGTGCCTGTGGATAATGATATAAAATTGTCAGATTAATTTTTAAACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCTGTGGATAATGATATAAAATTGTCAGATTAATTTTTAAACCAT  343

seq1  TTCTGTAGGAATACAGTCATGTTTCCCACCATGATAATTATAGACTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGGAATACAGTCATGTTTCCCACCATGATAATTATAGACTAAAT  393

seq1  ATCTGAAATTATAAGCTAGCTCCAGTTATATGTTTTCCTTTATGAGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAATTATAAGCTAGCTCCAGTTATATGTTTTCCTTTATGAGAATA  443

seq1  GCAATGCTCATTATGTCTCCTCACAGCAATAAATCTCTAACTAAGAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGCTCATTATGTCTCCTCACAGCAATAAATCTCTAACTAAGAATTC  493

seq1  CTACTTAGATAGGGTTTGGACTTCATGCTGACCTCCATTTTTCTTGCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTAGATAGGGTTTGGACTTCATGCTGACCTCCATTTTTCTTGCTAG  543

seq1  TATTTTGATTCACTTGAACATTCACATATCATTGCATGTTATTATATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGATTCACTTGAACATTCACATATCATTGCATGTTATTATATTTA  593

seq1  GGGTGATGCCCTAAATATAACTTCCATCTTTTCTTGAGAATTTATTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGATGCCCTAAATATAACTTCCATCTTTTCTTGAGAATTTATTATTT  643

seq1  CCATGAGATTATAGTTTACCTCTCGTTCTTAGTTTCTTTCCACAGCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGATTATAGTTTACCTCTCGTTCTTAGTTTCTTTCCACAGCTTTT  693

seq1  GACCTAAATTCTTAGTACTGGGGGAGAAGAAAAAAAGTATATAATGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAAATTCTTAGTACTGGGGGAGAAGAAAAAAAGTATATAATGAAAA  743

seq1  CTTAATGACTTTAATTTTCTGTGATCCTCTTTGACAGATACATTAAGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGACTTTAATTTTCTGTGATCCTCTTTGACAGATACATTAAGTAA  793

seq1  TATTATTTTGTAGGTGTGGATTTGGAGCCTTTCAGATTAAGGGGTGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTTGTAGGTGTGGATTTGGAGCCTTTCAGATTAAGGGGTGTTTT  843

seq1  TCAACAAAACATAAAATTAAATAGAAAAAGAGATGTTTCAGAGAGTAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAAACATAAAATTAAATAGAAAAAGAGATGTTTCAGAGAGTAGAA  893

seq1  AACACCAATTGTGAGGAAGTGAGTTCATACCTTCCAAAAGAATATGAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAATTGTGAGGAAGTGAGTTCATACCTTCCAAAAGAATATGAATA  943

seq1  CAGGCCTGTAATCCAGTGATCATATGGAGGGTAAGAGAGTGAATCAAGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTGTAATCCAGTGATCATATGGAGGGTAAGAGAGTGAATCAAGAG  993

seq1  AATCTCTACAGGTTTCCTATGAAGAGATCTAGGCATATGTGATAAGAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTACAGGTTTCCTATGAAGAGATCTAGGCATATGTGATAAGAAAA  1043

seq1  TAAAGAAATCCAGCAGGCAAATATGCTTGTACAAGACTTTAGTCCCAGTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAATCCAGCAGGCAAATATGCTTGTACAAGACTTTAGTCCCAGTA  1093

seq1  GTCTAGAACAAGACACTGGTGGATATTTCTGAATTC  1136
      ||||||||||||||||||||||||||||||||||||
seq2  GTCTAGAACAAGACACTGGTGGATATTTCTGAATTC  1129

seq1: chr17_19424020_19425098
seq2: B6Ng01-156F14.g_69_1151

seq1  GAATTCATTTTTTTCCCTAAGGTTATTGTTAACCTCTGGTTCTTAGTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTTTCCCTAAGGTTATTGTTAACCTCTGGTTCTTAGTTAC  50

seq1  TTTCCACAGCTTTTGCCATAAATTTTTAGCACTGGGGGATAAGAAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACAGCTTTTGCCATAAATTTTTAGCACTGGGGGATAAGAAAAATT  100

seq1  ATATAATGAAAAATTAGTGACATTTTTTTTCAGTGATCCACTTTAACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATGAAAAATTAGTGACATTTTTTTTCAGTGATCCACTTTAACAGG  150

seq1  TACATTAAGTAAGACTATTTTGTAAGTGTGGATTTTGAGCCTTTCAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAAGTAAGACTATTTTGTAAGTGTGGATTTTGAGCCTTTCAGAGT  200

seq1  AAAGGGTATTTTTCAACAAACCGTATAATTAAACAGGTAAAAAGATGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTATTTTTCAACAAACCGTATAATTAAACAGGTAAAAAGATGTTT  250

seq1  CAGAGAGTAGAAAACACCAACTGTGATGAACTGAATTCATACCTCCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGTAGAAAACACCAACTGTGATGAACTGAATTCATACCTCCCAAA  300

seq1  ATAATATGAGTACATGCCTGTAATCCAGCGATCATACGGAGGGTAAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATGAGTACATGCCTGTAATCCAGCGATCATACGGAGGGTAAGAGA  350

seq1  GTGAATCAGGAGAATCTCTACAGGTTTCAGATGAAGAGTTCTAGGTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATCAGGAGAATCTCTACAGGTTTCAGATGAAGAGTTCTAGGTATAT  400

seq1  GTGAGAAGAAAATAAAGAAATCCAGCAGGCAAATATACTAGAACAAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAGAAAATAAAGAAATCCAGCAGGCAAATATACTAGAACAAGACT  450

seq1  TTATTCCTAGTAGTTTAGAAAAAGAGACTGGTGGGTATTTCTGAATTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCTAGTAGTTTAGAAAAAGAGACTGGTGGGTATTTCTGAATTCAA  500

seq1  GATCAATTGTGATTTGCACAACTTATAGTCAAGTCATAGACACTGTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATTGTGATTTGCACAACTTATAGTCAAGTCATAGACACTGTGTTA  550

seq1  CTGAGTAAACCAAGGAAGCAACTAAACATTAAATGAATGAAATGCATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTAAACCAAGGAAGCAACTAAACATTAAATGAATGAAATGCATAAA  600

seq1  TGCATAAGTGCATTGATATATATATAGATCTGTACATTCTAAGAGACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAGTGCATTGATATATATATAGATCTGTACATTCTAAGAGACATG  650

seq1  CATACATGTAATCACACATGAAAACATCATAAATACAATGATAAAAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGTAATCACACATGAAAACATCATAAATACAATGATAAAAATAT  700

seq1  ATAGGGCATGGTACTGTACTATTTAATGTCATCTATTCACATTTAGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGCATGGTACTGTACTATTTAATGTCATCTATTCACATTTAGAAGC  750

seq1  AGTCTTTCCTTAGTTTCTCTAAGAAATTAGTAAATCCATGCTGCAATACT  800
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGTCTTTCCTTAGTTTCTCTAAGAAA-TAGTAAATCCATGCTGCAATACT  799

seq1  CAAAATATTATATCAGAGAAATAGTTCCCAT-GGTCACATGCCATGAAAT  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAAAATATTATATCAGAGAAATAGTTCCCATGGGTCACATGCCATGAAAT  849

seq1  GAATTTCAAAAGATTTTTAAATTAAGATAATTTCTTTAAAAACTTGTTAG  899
      ||||||| ||||||||||||||||||||| ||||||| ||||||||||||
seq2  GAATTTC-AAAGATTTTTAAATTAAGATATTTTCTTTTAAAACTTGTTAG  898

seq1  GTAGATAGTAAAATAGTGAGTTTTCACATG-TTAAGATGACAGAAAGCCA  948
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  GTAGATAGTAAAATAGTGAGTTTTCACATGTTTAAGATGACAG-AAGCCA  947

seq1  AAGATCTACA-TTTCAAAAGATGGG-ATATTTGGTGCAAAATGA-TTCCT  995
      |   |||||| |||||||||||||| ||||||||||| |||||| ||| |
seq2  AGATTCTACATTTTCAAAAGATGGGAATATTTGGTGC-AAATGATTTCTT  996

seq1  GACTGGTAAAC-AAAATGTATAAAGAATAAATCTATGAAAT-ATAAATAA  1043
      ||||||||||| ||||||||||||| || |||||||||||| ||||||||
seq2  GACTGGTAAACAAAAATGTATAAAGGAT-AATCTATGAAATAATAAATAA  1045

seq1  TATA-TGCTTT-GAGAATCAATAAATAA-TGAGTAGTAA  1079
      | || |||||| ||||||| |||||||| ||||||||||
seq2  TTTATTGCTTTGGAGAATC-ATAAATAATTGAGTAGTAA  1083