BAC Information

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BAC

Clone NameB6Ng01-156L03
Chromosome17 (Build37)
Map Location 34,248,419 - 34,430,233
singlet/doubletdoublet
Overlap geneBrd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa
Upstream geneMorc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa
Downstream geneH2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156L03.bB6Ng01-156L03.g
ACCDH951132DH951133
length1,037282
definitionDH951132|Mus musculus domesticus DNA, BAC clone: B6Ng01-156L03, 5' end.DH951133|Mus musculus domesticus DNA, BAC clone: B6Ng01-156L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,248,419 - 34,249,462)(34,429,952 - 34,430,233)
sequence
gaattcaccttcttaggtctaggcttagctggctttccttcctgtagagg
ttaactgctgtttttcaccaccttcaccagtcctatcactcttactctcc
acttgcaggtatatattgactcacttgtggcagaatgaactgtcactatt
ttggacactcctcagcctctgctcccatttcctttggtacactaaactaa
agcctcactttgaagagctgtgcatcacacagctcctgaatgaagacttg
gaacttaagacagagtggagtgccttataacctggttgaactcaaactaa
gctatccccttacctgtttggtcactgataggtacttagtaccagtcctt
gtctagcactctaggcttcaattcttagcactcttaaaagacagacctag
gggccaactgggggatatagctaatgatgatgtgatacccagcaccgaat
caagcagaacaatcgccacccaccccagcaccaataatactcaaccattt
cttctgagccactttgaacacagaaacaaatctcactaagaaaactaact
caaaacttcaataatattttctttatttacatgttagactcaagaaagaa
aagacagtcttggggccaactggagaggtgactaaaatccccaggcccca
aatggagtggaagtaaaagggaaaagtagaaaaaaaaagtcaatgtaaaa
aacaaaaagagctccctcttcttccctccccatggaagctggagggagga
ccacggctacacacccccagccttaccacatagcttaaataaattaaaac
ctcaaaacagggcccttagaagtgaacaggacagctacagctcagggggc
tttatgccaggcctatccccactcccacccatacccttgccccaccccca
tcatcctcaacagggacaccacacccaagagggctaggaattcatcgtat
ttgtccatgtccctgccttcctccccactgcagagcagctctctatggag
ggtgagatgagagcgtcacagcaagggaaagtgggga
tctgtactgagtgggaatagggactctctgtctgtgctttgattctgcac
ggctatgaccacggtcagaataagctccagtacacatctgggtacattcc
ctcacccccaccattaacccagcctagactttctgtttactcaaaccatg
aggatctgactcagccaatgcagttgatttggggaatatattggtaattt
aaaattatctatttgtttatttttatgagcataggtgtcttgcctgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_34248419_34249462
seq2: B6Ng01-156L03.b_48_1084

seq1  GAATTCACCTTCTTAGGTCTAGGCTTAGCTGGCTTTCCTTCCTGTAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTCTTAGGTCTAGGCTTAGCTGGCTTTCCTTCCTGTAGAGG  50

seq1  TTAACTGCTGTTTTTCACCACCTTCACCAGTCCTATCACTCTTACTCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGCTGTTTTTCACCACCTTCACCAGTCCTATCACTCTTACTCTCC  100

seq1  ACTTGCAGGTATATATTGACTCACTTGTGGCAGAATGAACTGTCACTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCAGGTATATATTGACTCACTTGTGGCAGAATGAACTGTCACTATT  150

seq1  TTGGACACTCCTCAGCCTCTGCTCCCATTTCCTTTGGTACACTAAACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACACTCCTCAGCCTCTGCTCCCATTTCCTTTGGTACACTAAACTAA  200

seq1  AGCCTCACTTTGAAGAGCTGTGCATCACACAGCTCCTGAATGAAGACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCACTTTGAAGAGCTGTGCATCACACAGCTCCTGAATGAAGACTTG  250

seq1  GAACTTAAGACAGAGTGGAGTGCCTTATAACCTGGTTGAACTCAAACTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTAAGACAGAGTGGAGTGCCTTATAACCTGGTTGAACTCAAACTAA  300

seq1  GCTATCCCCTTACCTGTTTGGTCACTGATAGGTACTTAGTACCAGTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCCCCTTACCTGTTTGGTCACTGATAGGTACTTAGTACCAGTCCTT  350

seq1  GTCTAGCACTCTAGGCTTCAATTCTTAGCACTCTTAAAAGACAGACCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGCACTCTAGGCTTCAATTCTTAGCACTCTTAAAAGACAGACCTAG  400

seq1  GGGCCAACTGGGGGATATAGCTAATGATGATGTGATACCCAGCACCGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAACTGGGGGATATAGCTAATGATGATGTGATACCCAGCACCGAAT  450

seq1  CAAGCAGAACAATCGCCACCCACCCCAGCACCAATAATACTCAACCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGAACAATCGCCACCCACCCCAGCACCAATAATACTCAACCATTT  500

seq1  CTTCTGAGCCACTTTGAACACAGAAACAAATCTCACTAAGAAAACTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGCCACTTTGAACACAGAAACAAATCTCACTAAGAAAACTAACT  550

seq1  CAAAACTTCAATAATATTTTCTTTATTTACATGTTAGACTCAAGAAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTCAATAATATTTTCTTTATTTACATGTTAGACTCAAGAAAGAA  600

seq1  AAGACAGTCTTGGGGCCAACTGGAGAGGTGACTAAAATCCCCAGGCCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGTCTTGGGGCCAACTGGAGAGGTGACTAAAATCCCCAGGCCCCA  650

seq1  AATGGAGTGGAAGTAAAAGGGAAAAGTAGAAAAAAAAAGTCAATGTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGTGGAAGTAAAAGGGAAAAGTAGAAAAAAAAAGTCAATGTAAAA  700

seq1  AACAAAAAGAGCTCCCTCTTCTTCCCTCCCCATGGAAGCTGGAGGGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAGAGCTCCCTCTTCTTCCCTCCCCATGGAAGCTGGAGGGAGGA  750

seq1  CCACGGCTACACACCCCCAGCCTTACCACATAGCTTAAATAAATTAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGCTACACACCCCCAGCCTTACCACATAGCTTAAATAAATTAAAAC  800

seq1  CTCAAAACAGGGCCCTTAGAAGTGAACAGGACAGCTACAGCTCAGGGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAACAGGGCCCTTAGAAGTGAACAGGACAGCTACAGCTCAGGGGGC  850

seq1  TTTATGCCAGGCCTATCCCCACTCCCACCCATACCCTTGCCCCACCCCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCCAGGCCTATCCCCACTCCCACCCATACCCTTGCCCCACCCCCA  900

seq1  TCATCCTCAACAGGGACACCACACCCAAGAGGGCTAGGAATTCAATCGTA  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCATCCTCAACAGGGACACCACACCCAAGAGGGCTAGGAATTC-ATCGTA  949

seq1  TTTTGTCCATGTCCCTGCCTTCCTCCCCACTGCAGAGCCAGCTCTCCTAT  1000
       |||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  -TTTGTCCATGTCCCTGCCTTCCTCCCCACTGCAGAG-CAGCTCT-CTAT  996

seq1  GGAGGGGTGAGATGAAGAAGCGTCACAGCAAGGGAAAGTGGGGA  1044
      ||| |||||||||||   ||||||||||||||||||||||||||
seq2  GGA-GGGTGAGATGA--GAGCGTCACAGCAAGGGAAAGTGGGGA  1037

seq1: chr17_34429952_34430233
seq2: B6Ng01-156L03.g_74_355 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACAGGCAAGACACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACAGGCAAGACACCT  50

seq1  ATGCTCATAAAAATAAACAAATAGATAATTTTAAATTACCAATATATTCC  100
      ||||||||                ||||||||||||||||||||||||||
seq2  ATGCTCATNNNNNNNNNNNNNNNNATAATTTTAAATTACCAATATATTCC  100

seq1  CCAAATCAACTGCATTGGCTGAGTCAGATCCTCATGGTTTGAGTAAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCAACTGCATTGGCTGAGTCAGATCCTCATGGTTTGAGTAAACAG  150

seq1  AAAGTCTAGGCTGGGTTAATGGTGGGGGTGAGGGAATGTACCCAGATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTAGGCTGGGTTAATGGTGGGGGTGAGGGAATGTACCCAGATGTG  200

seq1  TACTGGAGCTTATTCTGACCGTGGTCATAGCCGTGCAGAATCAAAGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGAGCTTATTCTGACCGTGGTCATAGCCGTGCAGAATCAAAGCACA  250

seq1  GACAGAGAGTCCCTATTCCCACTCAGTACAGA  282
      ||||||||||||||||||||||||||||||||
seq2  GACAGAGAGTCCCTATTCCCACTCAGTACAGA  282