BAC Information

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BAC

Clone NameB6Ng01-156N08
Chromosome17 (Build37)
Map Location 19,440,430 - 19,441,549
singlet/doubletsinglet
Overlap geneLOC627476
Upstream geneEG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070, Vmn2r-ps115, Vmn2r-ps117, LOC100042183, EG627367, EG224552, LOC665344, LOC627466
Downstream geneEG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156N08.bB6Ng01-156N08.g
ACCDH951234DH951235
length1,1141,199
definitionDH951234|Mus musculus domesticus DNA, BAC clone: B6Ng01-156N08, 5' end.DH951235|Mus musculus domesticus DNA, BAC clone: B6Ng01-156N08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgtctggtttcaacaagataatgtaacacttgggaccaaatat
gaaggcaaggagtgctgtgctggaagccaagatagagaagacttccatag
ccaccatgatcttccctttagtgctgtggtaaacaggaagaaaggtgacc
cagacacagaagaacaccagcatactgaatgacacaaatttggattcatt
gaatgtgtcaggcaaatttctagacaagaaggccatggcataactcccaa
aggccaagaaacaaaggtatcccaggactgagtggaaggcaacaactgag
cccttgctgcacaaaatgatgatgtgtccatgttcagtatgagcatcttg
gtcaatgaatggtggagacgttgccatccatattccacaaataagaagtt
ggatcaaggtgcagataggaatgatgtaatttggaccccttgatatcatt
agccaccttaccattctccctggaaaactgaccttaaaggcaaggaccac
agcaatagctttggccaacacagtggcaagagccatagtgaaagcaactg
caaatgtggtctgctgaaggatgcaggcagctgtgtttggcttaccaatg
aagttcaaagaacacaggaaacagaatgtgaggttgatgagcaaaacata
actgagagctcgattattggccttgacaataggagtgtctctgtgcttca
caaagatgccaataacaaaggcagtgagtgcagacaagcacaaagctatg
cttgccaatgccagccccaaggggtcttcataggccagaaagctcacaga
tttttggaagcagttgctcttcactgtatttgcataatgactttctggac
acttcacacactggtctatatctggtcaaaaatataggttatcttgagat
caggagttcagtctatgaagatttcttttattgttagacatctctaacta
tagggacagtcacagaagtcactgtattttgtttctcatggacaaagtat
tagtacagtgttatgaataaatctagattcagaaaacagcttcttgttct
ttacatattttctttcatagtaagttcacatactataggattggatcagc
tttattaatactac
gaattctttatatatgttgcatattagccacctatgggattaaacattgg
taaagagcttttcccagtctgttggttgccattttgtcctattgacagtg
tcttttgccttacagaatctttgcaattttatgaggtttcatttgtagat
tcttgattttacagaataagcaattggtgttctgttcaggaatattcccc
tgtgcccatatctttgaggctcttcaccactttctcctctatgtttcagt
atccatgattttatgtagagtaccttgatccacttagacttcagctttgt
acaaggagataagaatggatcaattcttgttctacatgctaaccgccagt
taattcagtaacatttgttgaaaatttttctttttcccactggctggttt
tacatcctttgtcaaagatcaagtcaccataggtgtgtgaaatcatttct
gtgtcatcaattctattccattgatcaacctacatgtcactgtatcaata
aaatgcagtttgtattgaaattgttctgtagtacagcttgaggccaggga
tggcgatttcaccagagaatcttatattgttaggagtagattttgctatt
ctaggtattttgttattccagatgaatttgcaaattgccctttctaactc
tgtgaagaattgagttggaattttgatggggattgcattgaattattaga
ttccttttggcaagatagacgtttttactatattaatcctgccaatccat
gagcatgggagatctttttatcttctgagatcttctttgatttctttctt
cagagactcaaagttattatcatatagatcttgacttccttatttagagt
cacaccaatgtattttatactatttgtgactattgtaagtggagttgttt
ccctaatttctttctcagctcttttatcctttgtgtagaagaagggccac
tgatttttttcagtaattttatatcaagctacttcactgtagttgttaat
aaggtttaggagttcctctgggagaatttttggtgtactaatatataatt
cttatcaatcatcttgcgaagactgatatttgacttctatcttcccattt
gtatccttgatcccttttgtgtctaattgttctgttcagggactcaggac
ttatgatagtacgagagatggtcaccacgggtcatggccggtattgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_19440430_19441549
seq2: B6Ng01-156N08.b_48_1161 (reverse)

seq1  GTAGTATTTAAATAAAGCTTGAATCAAATCCTATAGTATGTGAACATAAC  50
      ||||||||  |||||||||   ||| ||||||||||||||||||| | ||
seq2  GTAGTATT--AATAAAGCT--GATCCAATCCTATAGTATGTGAAC-TTAC  45

seq1  TATGGAAAGAAATATGTAAAGAACAAGAAGCTG-TTTCTGAATCTAGATT  99
      |||| ||  |||||||||||||||||||||||| ||||||||||||||||
seq2  TATGAAAGAAAATATGTAAAGAACAAGAAGCTGTTTTCTGAATCTAGATT  95

seq1  TATTCATAACACTGTACTAATTACTTTGTCCATGAGAAAACAAAATACAG  149
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  TATTCATAACACTGTACTAA-TACTTTGTCCATGAG-AAACAAAATACAG  143

seq1  TGACTTCTGTGACTGTCCCTATAGTTAGAGATGTCTAACAATAAAAGAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCTGTGACTGTCCCTATAGTTAGAGATGTCTAACAATAAAAGAAA  193

seq1  TCTTCATAGACTGAACTCCTGATCTCAAGATAACCTATATTTTTGACCAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATAGACTGAACTCCTGATCTCAAGATAACCTATATTTTTGACCAG  243

seq1  ATATAGACCAGTGTGTGAAGTGTCCAGAAAGTCATTATGCAAATACAGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGACCAGTGTGTGAAGTGTCCAGAAAGTCATTATGCAAATACAGTG  293

seq1  AAGAGCAACTGCTTCCAAAAATCTGTGAGCTTTCTGGCCTATGAAGACCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAACTGCTTCCAAAAATCTGTGAGCTTTCTGGCCTATGAAGACCC  343

seq1  CTTGGGGCTGGCATTGGCAAGCATAGCTTTGTGCTTGTCTGCACTCACTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGCTGGCATTGGCAAGCATAGCTTTGTGCTTGTCTGCACTCACTG  393

seq1  CCTTTGTTATTGGCATCTTTGTGAAGCACAGAGACACTCCTATTGTCAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTTATTGGCATCTTTGTGAAGCACAGAGACACTCCTATTGTCAAG  443

seq1  GCCAATAATCGAGCTCTCAGTTATGTTTTGCTCATCAACCTCACATTCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATAATCGAGCTCTCAGTTATGTTTTGCTCATCAACCTCACATTCTG  493

seq1  TTTCCTGTGTTCTTTGAACTTCATTGGTAAGCCAAACACAGCTGCCTGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTGTTCTTTGAACTTCATTGGTAAGCCAAACACAGCTGCCTGCA  543

seq1  TCCTTCAGCAGACCACATTTGCAGTTGCTTTCACTATGGCTCTTGCCACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGCAGACCACATTTGCAGTTGCTTTCACTATGGCTCTTGCCACT  593

seq1  GTGTTGGCCAAAGCTATTGCTGTGGTCCTTGCCTTTAAGGTCAGTTTTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGCCAAAGCTATTGCTGTGGTCCTTGCCTTTAAGGTCAGTTTTCC  643

seq1  AGGGAGAATGGTAAGGTGGCTAATGATATCAAGGGGTCCAAATTACATCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAATGGTAAGGTGGCTAATGATATCAAGGGGTCCAAATTACATCA  693

seq1  TTCCTATCTGCACCTTGATCCAACTTCTTATTTGTGGAATATGGATGGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATCTGCACCTTGATCCAACTTCTTATTTGTGGAATATGGATGGCA  743

seq1  ACGTCTCCACCATTCATTGACCAAGATGCTCATACTGAACATGGACACAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTCCACCATTCATTGACCAAGATGCTCATACTGAACATGGACACAT  793

seq1  CATCATTTTGTGCAGCAAGGGCTCAGTTGTTGCCTTCCACTCAGTCCTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTTGTGCAGCAAGGGCTCAGTTGTTGCCTTCCACTCAGTCCTGG  843

seq1  GATACCTTTGTTTCTTGGCCTTTGGGAGTTATGCCATGGCCTTCTTGTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTTTGTTTCTTGGCCTTTGGGAGTTATGCCATGGCCTTCTTGTCT  893

seq1  AGAAATTTGCCTGACACATTCAATGAATCCAAATTTGTGTCATTCAGTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTGCCTGACACATTCAATGAATCCAAATTTGTGTCATTCAGTAT  943

seq1  GCTGGTGTTCTTCTGTGTCTGGGTCACCTTTCTTCCTGTTTACCACAGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGTTCTTCTGTGTCTGGGTCACCTTTCTTCCTGTTTACCACAGCA  993

seq1  CTAAAGGGAAGATCATGGTGGCTATGGAAGTCTTCTCTATCTTGGCTTCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGGAAGATCATGGTGGCTATGGAAGTCTTCTCTATCTTGGCTTCC  1043

seq1  AGCACAGCACTCCTTGCCTTCATATTTGGTCCCAAGTGTTACATTATCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCACTCCTTGCCTTCATATTTGGTCCCAAGTGTTACATTATCTT  1093

seq1  GTTGAAACCAGACAAGAATTC  1120
      |||||||||||||||||||||
seq2  GTTGAAACCAGACAAGAATTC  1114