BAC Information

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BAC

Clone NameB6Ng01-157A08
Chromosome17 (Build37)
Map Location 56,333,212 - 56,485,349
singlet/doubletdoublet
Overlap geneDpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b
Upstream geneLOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e
Downstream genePtprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157A08.bB6Ng01-157A08.g
ACCDH951366DH951367
length1,1191,093
definitionDH951366|Mus musculus domesticus DNA, BAC clone: B6Ng01-157A08, 5' end.DH951367|Mus musculus domesticus DNA, BAC clone: B6Ng01-157A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,484,197 - 56,485,349)(56,333,212 - 56,334,312)
sequence
gaattccctagtttccttctgggagctggggaaagaactcttccgtggca
ttccggtagccgggaagtggtggcacatgccttgggagcacttgggaggc
aaaggcaggcggatctctgagttcaaggccagcctggtctactggtctac
agagtgagttccaggacagccagagctatacagagaaaacctgtctcgag
gaaaaaaaaaaaaaaagaactcttccactcccttcaggctcatcctggct
cagaaaccttgtttgagggcaaaggctgtctggggcactaagcttgaagg
acaaaaacagttgttttaggaggttaagacacaatgacttccaagccaga
gccacctgtccactgtctctcagccaccagtgatccacactgcctgcaag
gacagtggctctggttgttttgagcccaagaggcagtaatctctggttca
agactctattgtgccagcttgagttaataaagcccaatgcagacagggag
tcccacctaagatgctgagccaggccctgcaggtcaagccttttgagccg
tggcttccctgtccacagcaagcggaaaggcctcccccagctccaatctg
caatggcctggtcagctcaatggccttgcaaaatcaccttgctgggaatc
atccctgaaccagggaggcggcaatgaacccacttggcagtggcatctgt
cttcatggctcagaggtaacatgaagcccaacttgaaaccccaaaaattt
atctacaacttgataaccccatctgggcctttctcagccctgcaccttcc
tggggaaccccaagccactacagatgcccctgctaaattagccctatcca
agctgcagagcggtgtagtggtcatgcccaaattcacacacaaggctcag
gactgtgtctctagccccagacacaaacgacacacctggtttctgaggca
gagatctgctatgtgagaggtgactgtgcttcagggagctagaggcacgg
tgaccaacatctcacactgggcgggactctgatgcaccacgaacatggtg
agcactgaagtgcattaaccgatccactcacagaaagctgggttggcttg
gtctagcatgatcagcata
gaattctgccgctgagcccctgccacccttctaggtctttccaaggcatg
ctcaggacagtgaattaacaagtacccaaagtcctgtgtgctgaaactgg
acctcgaagccttgcaggcagagctgcagtgcacctcaggctctggggtg
atttctcagaacaccgtctctttttctgaggtccctctagtaactgaccc
tgtactccctgtcagaattacaacttccacagggcagtggtggcacacac
ctttaatcctagtcctccagaggcagaggcaggcagatcagatctgagct
ggaggccagcctggtctacagagtgaattcaaggacagccagggctacac
agagaaaccctgtctcaaaaaaacaaacaacaataataaaaaaaacttct
acaccttcccaacatctcagtgctcagaggcactgtcacaaccattaccc
cagggtgccagccagcctgcatctgcagccacacctgagtcaggagagac
acacagggaacctcttttgacccgagatgactcttccccaggcgtgcacc
tgtccctggcagcccggttgtctaccttgcccttccccctggctggcagg
ccagctccctaagaccacactactcactggctgcctccatcatgctggcc
cagaagcgtggttgcttgtgcagtgggtcatcatcggggccgctcagctt
gtacacatgtacacagggtggcgtgctcacactgctgtagtgactcacga
acatgtcgaagctctgctggccgcaggatggcactcagtgtacaggagca
ggcttctgcctcctccgagacactgtacagcctcacccgcctgtggatca
ttgccacgctctttgcagtgacgaacctgctcagtgagggtcattctcag
cctggagacccaggcttcgtcctcaatggacagcatcagcctggtttcta
gagtgtttaagaggctaagagctgtgggctgatcagagggagcagcctcc
ccacacttccgttcttcccggaaccttggagctgggtagcatgtgaccct
ggaagctgggtgggcgtggtgaccctggaagcctggggtgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_56484197_56485349
seq2: B6Ng01-157A08.b_47_1165 (reverse)

seq1  TATGCTGATCCATGCTTAGCACCAAGCCACACCCCAGCCTCTCTGTGAAG  50
      ||||||||| ||||| ||| |||||||  || ||||| || |||||||  
seq2  TATGCTGAT-CATGC-TAG-ACCAAGC--CAACCCAG-CTTTCTGTGA--  42

seq1  TGTGAATCGTGTTAATGCACTGTCCAGTGCTCACCATGTGTCTGTGGTGG  100
       ||| |||| ||||||||||  | ||||||||||||||| || |||||| 
seq2  -GTGGATCG-GTTAATGCAC--TTCAGTGCTCACCATGT-TC-GTGGTG-  85

seq1  CCATCAGAGTCCCCGCCCAGTGTGAGATGTTGTGTCCACCCGTGCCCTTC  150
       ||||||||| ||||||||||||||||||||| |||   |||||||  ||
seq2  -CATCAGAGT-CCCGCCCAGTGTGAGATGTTG-GTC--ACCGTGCC--TC  128

seq1  TTAGCTCCCCTTGAAAGGCACCAGTCACCCTCTCACATAGCAGGTTCCTC  200
       ||||||||  ||||  ||| |||||| ||||||||||||||| |  |||
seq2  -TAGCTCCC--TGAA--GCA-CAGTCA-CCTCTCACATAGCAGAT--CTC  169

seq1  TGCCCTCAGGAAACCAGGTGTGTTCGTTTGTGTCTGGGGCTAGAGACACA  250
      || ||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  TG-CCTCA-GAAACCAGGTGTG-TCGTTTGTGTCTGGGGCTAGAGACACA  216

seq1  GTCCTGGGCCTTGTGTGTGAATTTGGGCATGACCACTACACCGCTCTGCA  300
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAGCCTTGTGTGTGAATTTGGGCATGACCACTACACCGCTCTGCA  266

seq1  GCTTGGATAGGGCTAATTTAGCAGGGGCATCTGTAGTGGCTTGGGGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGATAGGGCTAATTTAGCAGGGGCATCTGTAGTGGCTTGGGGTTCC  316

seq1  CCAGGAAGGTGCAGGGCTGAGAAAGGCCCAGATGGGGTTATCAAGTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAGGTGCAGGGCTGAGAAAGGCCCAGATGGGGTTATCAAGTTGTA  366

seq1  GATAAATTTTTGGGGTTTCAAGTTGGGCTTCATGTTACCTCTGAGCCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATTTTTGGGGTTTCAAGTTGGGCTTCATGTTACCTCTGAGCCATG  416

seq1  AAGACAGATGCCACTGCCAAGTGGGTTCATTGCCGCCTCCCTGGTTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGATGCCACTGCCAAGTGGGTTCATTGCCGCCTCCCTGGTTCAGG  466

seq1  GATGATTCCCAGCAAGGTGATTTTGCAAGGCCATTGAGCTGACCAGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTCCCAGCAAGGTGATTTTGCAAGGCCATTGAGCTGACCAGGCCA  516

seq1  TTGCAGATTGGAGCTGGGGGAGGCCTTTCCGCTTGCTGTGGACAGGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGATTGGAGCTGGGGGAGGCCTTTCCGCTTGCTGTGGACAGGGAAG  566

seq1  CCACGGCTCAAAAGGCTTGACCTGCAGGGCCTGGCTCAGCATCTTAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGCTCAAAAGGCTTGACCTGCAGGGCCTGGCTCAGCATCTTAGGTG  616

seq1  GGACTCCCTGTCTGCATTGGGCTTTATTAACTCAAGCTGGCACAATAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCCTGTCTGCATTGGGCTTTATTAACTCAAGCTGGCACAATAGAG  666

seq1  TCTTGAACCAGAGATTACTGCCTCTTGGGCTCAAAACAACCAGAGCCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAACCAGAGATTACTGCCTCTTGGGCTCAAAACAACCAGAGCCACT  716

seq1  GTCCTTGCAGGCAGTGTGGATCACTGGTGGCTGAGAGACAGTGGACAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGCAGGCAGTGTGGATCACTGGTGGCTGAGAGACAGTGGACAGGT  766

seq1  GGCTCTGGCTTGGAAGTCATTGTGTCTTAACCTCCTAAAACAACTGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGGCTTGGAAGTCATTGTGTCTTAACCTCCTAAAACAACTGTTTT  816

seq1  TGTCCTTCAAGCTTAGTGCCCCAGACAGCCTTTGCCCTCAAACAAGGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTCAAGCTTAGTGCCCCAGACAGCCTTTGCCCTCAAACAAGGTTT  866

seq1  CTGAGCCAGGATGAGCCTGAAGGGAGTGGAAGAGTTCTTTTTTTTTTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCAGGATGAGCCTGAAGGGAGTGGAAGAGTTCTTTTTTTTTTTTT  916

seq1  TTCCTCGAGACAGGTTTTCTCTGTATAGCTCTGGCTGTCCTGGAACTCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCGAGACAGGTTTTCTCTGTATAGCTCTGGCTGTCCTGGAACTCAC  966

seq1  TCTGTAGACCAGTAGACCAGGCTGGCCTTGAACTCAGAGATCCGCCTGCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGACCAGTAGACCAGGCTGGCCTTGAACTCAGAGATCCGCCTGCC  1016

seq1  TTTGCCTCCCAAGTGCTCCCAAGGCATGTGCCACCACTTCCCGGCTACCG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCCCAAGTGCTCCCAAGGCATGTGCCACCACTTCCCGGCTACCG  1066

seq1  GAATGCCACGGAAGAGTTCTTTCCCCAGCTCCCAGAAGGAAACTAGGGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCACGGAAGAGTTCTTTCCCCAGCTCCCAGAAGGAAACTAGGGAA  1116

seq1  TTC  1153
      |||
seq2  TTC  1119

seq1: chr17_56333212_56334312
seq2: B6Ng01-157A08.g_68_1160

seq1  GAATTCTGCCGCTGAGCCCCTGCCACCCTTCTAGGTCTTTCCAAGGCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCGCTGAGCCCCTGCCACCCTTCTAGGTCTTTCCAAGGCATG  50

seq1  CTCAGGACAGTGAATTAACAAGTACCCAAAGTCCTGTGTGCTGAAACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGACAGTGAATTAACAAGTACCCAAAGTCCTGTGTGCTGAAACTGG  100

seq1  ACCTCGAAGCCTTGCAGGCAGAGCTGCAGTGCACCTCAGGCTCTGGGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCGAAGCCTTGCAGGCAGAGCTGCAGTGCACCTCAGGCTCTGGGGTG  150

seq1  ATTTCTCAGAACACCGTCTCTTTTTCTGAGGTCCCTCTAGTAACTGACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCAGAACACCGTCTCTTTTTCTGAGGTCCCTCTAGTAACTGACCC  200

seq1  TGTACTCCCTGTCAGAATTACAACTTCCACAGGGCAGTGGTGGCACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCCCTGTCAGAATTACAACTTCCACAGGGCAGTGGTGGCACACAC  250

seq1  CTTTAATCCTAGTCCTCCAGAGGCAGAGGCAGGCAGATCAGATCTGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCTAGTCCTCCAGAGGCAGAGGCAGGCAGATCAGATCTGAGCT  300

seq1  GGAGGCCAGCCTGGTCTACAGAGTGAATTCAAGGACAGCCAGGGCTACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCAGCCTGGTCTACAGAGTGAATTCAAGGACAGCCAGGGCTACAC  350

seq1  AGAGAAACCCTGTCTCAAAAAAACAAACAACAATAATAAAAAAAACTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACCCTGTCTCAAAAAAACAAACAACAATAATAAAAAAAACTTCT  400

seq1  ACACCTTCCCAACATCTCAGTGCTCAGAGGCACTGTCACAACCATTACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTCCCAACATCTCAGTGCTCAGAGGCACTGTCACAACCATTACCC  450

seq1  CAGGGTGCCAGCCAGCCTGCATCTGCAGCCACACCTGAGTCAGGAGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGCCAGCCAGCCTGCATCTGCAGCCACACCTGAGTCAGGAGAGAC  500

seq1  ACACAGGGAACCTCTTTTGACCCGAGATGACTCTTCCCCAGGCGTGCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGAACCTCTTTTGACCCGAGATGACTCTTCCCCAGGCGTGCACC  550

seq1  TGTCCCTGGCAGCCCGGTTGTCTACCTTGCCCTTCCCCCTGGCTGGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGGCAGCCCGGTTGTCTACCTTGCCCTTCCCCCTGGCTGGCAGG  600

seq1  CCAGCTCCCTAAGACCACACTACTCACTGGCTGCCTCCATCATGCTGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCCTAAGACCACACTACTCACTGGCTGCCTCCATCATGCTGGCC  650

seq1  CAGAAGCGTGGTTGCTTGTGCAGTGGGTCATCATCGGGGCCGCTCAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCGTGGTTGCTTGTGCAGTGGGTCATCATCGGGGCCGCTCAGCTT  700

seq1  GTACACATGTACACAGGGTGGCGTGCTCACACTGCTGTAGTGACTCACGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACATGTACACAGGGTGGCGTGCTCACACTGCTGTAGTGACTCACGA  750

seq1  ACATGTCGAAGCTCTGCTGGCCGCAGGATGGCACTCAGTGTACAGGAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCGAAGCTCTGCTGGCCGCAGGATGGCACTCAGTGTACAGGAGCA  800

seq1  GGCTTCTGCCTCCCCCGAGACACTGTACAGCCCCACCCGCCTGTGGATCA  850
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  GGCTTCTGCCTCCTCCGAGACACTGTACAGCCTCACCCGCCTGTGGATCA  850

seq1  TTGCCACGCCCTTTGCAGGTGACGAACCTGCCCAGTGAGGGTCATTCCCA  900
      ||||||||| ||||||| ||||||||||||| ||||||||||||||| ||
seq2  TTGCCACGCTCTTTGCA-GTGACGAACCTGCTCAGTGAGGGTCATTCTCA  899

seq1  GCCTGGAGACCCAGGCTTCGTCCTCAATGGACAGGCATCAGCCTGGTTTC  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCCTGGAGACCCAGGCTTCGTCCTCAATGGACA-GCATCAGCCTGGTTTC  948

seq1  TAGAGTGTTTTAAGAGGCTAAGAGCTGTGGGCTGATCAGAGGGAGCAGCC  1000
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTG-TTTAAGAGGCTAAGAGCTGTGGGCTGATCAGAGGGAGCAGCC  997

seq1  TCCCCACACTTCCG-TCCTCCCGGACCCTGGGAGGCTGGGGTAGGCATGG  1049
      |||||||||||||| || ||||||| ||| ||| ||| ||||| |||| |
seq2  TCCCCACACTTCCGTTCTTCCCGGAACCTTGGA-GCT-GGGTA-GCAT-G  1043

seq1  TGACCCTGGGAGGCTGGGGTGGGCGTGGTGACCCTGGGAGGCTGGGGTGG  1099
      ||||||| ||| ||| ||||||||||||||||||||| || |||||||||
seq2  TGACCCT-GGAAGCT-GGGTGGGCGTGGTGACCCTGGAAGCCTGGGGTGG  1091

seq1  GC  1101
      ||
seq2  GC  1093