BAC Information

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BAC

Clone NameB6Ng01-157J05
Chromosome17 (Build37)
Map Location 89,463,046 - 89,607,086
singlet/doubletdoublet
Overlap geneFshr
Upstream geneFbxo11, EG225058, Foxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867
Downstream geneLOC100043904, LOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157J05.bB6Ng01-157J05.g
ACCDH951770DH951771
length1,1881,067
definitionDH951770|Mus musculus domesticus DNA, BAC clone: B6Ng01-157J05, 5' end.DH951771|Mus musculus domesticus DNA, BAC clone: B6Ng01-157J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,605,883 - 89,607,086)(89,463,046 - 89,464,126)
sequence
gaattcttactccccaagcccatctctcagctggcactcacatgccacta
ctgtagggctagaaaggacagttgtgtcttatacacttctcaggtcaaca
ggcttcactaatattctaacttgtagaatgatcctatctcattgtggaaa
agtatatataagtacattaatatataataaatgtataataatatataata
tattataaatattatgctatttataaatatagtataaataaaatataata
taatgtagtacaaatataatatactatattacatatattattagcctcct
atttttacataatcctttctatccttagcatccaaatacaaataaaatat
cacttaaaaaggctaatattagccctagcacttgggaggcagaggcaggt
ggatttctgagttcgaggccagactggtctacagagtgagttccaggaca
gctagggctacacagagaaaccctgtctcagaaaaacgaaaaaaaaaaaa
aaaaaggactaatatttaaaagcaaatgtatgttaacaaataaattaata
ctcttagttttataataatatagttatgtagaaagaaatttgtgtcttta
ttaatcagagatagaaaacaagaattaataatgtaattttaaaaaaatgg
actgtatcattttttccctttgggcataacaaaatacttagctactagtt
taacaaactagtaaaatctgaagctgaatattcaactttatcagtatcac
catgtgagtaagcttcactttgaaaaaaacaatagaaaaaaaaaaaccca
atgccctctaaatacttccgtgcaagagacaaaagaccagtaaaggtggg
tgaccacaattgtttacacccttatttgaactttgctataccatgtgtca
cagcattgttttcatttgttgcttcatatggcctaagaggctacagcaaa
ttaatgatatgcaaatttggagtatttagaatatagtatcacatgaacaa
aaccaaacacttgtagcctcactgaaatcatttcaggacaagaccattgt
agatctatagctactgtaacatgggggtgaacttggctaagtctcaaaaa
ctcagccaactaagaacaaactacttttctggagagcaatgaaatatatg
ggttttttataaaaaaaaaatccttatactggagctgg
gaattccacaggaagaggcagtgtcttctgcattgctttgtgagcagaga
ttgtgtcctgcaggctgcctgattagtggctctcactcaccaatagttgg
tagactaaaggaatgacagaaatacggttatattgttaatttacctaaga
agcctggcaaagaacatggaggccagctggttttctagccaattaaaaga
ggaaggaggaacagttagccctctaacttcaggctggctttttctctggc
acagtgctgaaccccagggtcccaggctctctgtgtgcctggttttcagc
ttgacttactctacttgttcatgggatagtttgtattctttcacttctca
tctgctaagttctggggttacatagtcatgcctggtttacacagggcttt
gagcacggtacccaagcagtacactaatgaacacacctccatcctaaaga
gagcaatgcccctgtacaataaagagcctctacgggatcaacccatggct
ttagcaccttaccttaaccaagataattgaccatgcttgtgccttatctt
tttcctaaacaagtgtttgggggaggggaataagcatgctcagaaccact
ggacttttggttaaaattgtgggactaatttattatatcaaatcccgatt
tggatttcagaattcatttaaatacattagttttataatttgcatgtcta
attatggttttctctgtcaccaagcacaagcaatctcttccctccatctt
aggatcattgtgtctttaaatgtaagacataagacacaggcattaccata
gcaatgtgcttttcaattagactgcaattgctgacaataaatatgattag
acaatgtaagtgatggggtaagccccacagtgtgtaaagcatgttgccaa
tgtgcagtgaggaagcagaacgattggaatagtatgtgattcctttgctg
ctggctggctctatacctaaagaaacctcttatgggagcacagttataat
ctgcaaaagaagactggttctcaaatgctcataactaagatgaaagctag
atttgaagggaagataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_89605883_89607086
seq2: B6Ng01-157J05.b_49_1236 (reverse)

seq1  CCAGCCTCCAGTATTATGGATTTTTTTTTTTTTATAAAAAAACCTATTAT  50
      |||| |||||||| || |||   |||||||||||||||||| ||   |||
seq2  CCAG-CTCCAGTA-TAAGGA---TTTTTTTTTTATAAAAAACCCATATAT  45

seq1  TTCATTTGCTCTTCCAGGGATATGTAGTTTGGTCTTAGTTGGGCTGAGTA  100
      |||| |||||| ||||  || | |||||||| |||||||| |||||||| 
seq2  TTCA-TTGCTC-TCCA--GAAAAGTAGTTTGTTCTTAGTT-GGCTGAGT-  89

seq1  TTTTGAGACTTAGCCATGTTCACACCCATGTTTACAGTAAGCTATAGATC  150
      |||||||||||||||| |||||| |||||| ||||||| |||||||||||
seq2  TTTTGAGACTTAGCCAAGTTCACCCCCATG-TTACAGT-AGCTATAGATC  137

seq1  TACAATGGTCTTGTCCTGAAATGGTTTCAGTGGGGCTACAAGTTGGTTTG  200
      ||||||||||||||||||||||| |||||||| ||||||||||  |||||
seq2  TACAATGGTCTTGTCCTGAAATGATTTCAGTGAGGCTACAAGT--GTTTG  185

seq1  GTTTTGTTCATGTGATACTATATTCTAAATACTCCAAATTTGCATATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTCATGTGATACTATATTCTAAATACTCCAAATTTGCATATCAT  235

seq1  TAATTTTGCTGTAGCCTCTTAGGCCATATGAAGCAACAAATGAAAACAAT  300
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAA-TTTGCTGTAGCCTCTTAGGCCATATGAAGCAACAAATGAAAACAAT  284

seq1  GCTGTGACACATGGTATAGCAAAGTTCAAATAAGGGTGTAAACAATTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGACACATGGTATAGCAAAGTTCAAATAAGGGTGTAAACAATTGTG  334

seq1  GTCACCCACCTTTACTGGTCTTTTGTCTCTTGCACGGAAGTATTTAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCACCTTTACTGGTCTTTTGTCTCTTGCACGGAAGTATTTAGAGG  384

seq1  GCATTGGGTTTTTTTTTTTCTATTGTTTTTTTCAAAGTGAAGCTTACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGGTTTTTTTTTTTCTATTGTTTTTTTCAAAGTGAAGCTTACTCA  434

seq1  CATGGTGATACTGATAAAGTTGAATATTCAGCTTCAGATTTTACTAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGATACTGATAAAGTTGAATATTCAGCTTCAGATTTTACTAGTTT  484

seq1  GTTAAACTAGTAGCTAAGTATTTTGTTATGCCCAAAGGGAAAAAATGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACTAGTAGCTAAGTATTTTGTTATGCCCAAAGGGAAAAAATGATA  534

seq1  CAGTCCATTTTTTTAAAATTACATTATTAATTCTTGTTTTCTATCTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCATTTTTTTAAAATTACATTATTAATTCTTGTTTTCTATCTCTGA  584

seq1  TTAATAAAGACACAAATTTCTTTCTACATAACTATATTATTATAAAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAGACACAAATTTCTTTCTACATAACTATATTATTATAAAACTA  634

seq1  AGAGTATTAATTTATTTGTTAACATACATTTGCTTTTAAATATTAGTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATTAATTTATTTGTTAACATACATTTGCTTTTAAATATTAGTCCT  684

seq1  TTTTTTTTTTTTTTTTCGTTTTTCTGAGACAGGGTTTCTCTGTGTAGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTCGTTTTTCTGAGACAGGGTTTCTCTGTGTAGCCC  734

seq1  TAGCTGTCCTGGAACTCACTCTGTAGACCAGTCTGGCCTCGAACTCAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTCCTGGAACTCACTCTGTAGACCAGTCTGGCCTCGAACTCAGAA  784

seq1  ATCCACCTGCCTCTGCCTCCCAAGTGCTAGGGCTAATATTAGCCTTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTGCCTCTGCCTCCCAAGTGCTAGGGCTAATATTAGCCTTTTTA  834

seq1  AGTGATATTTTATTTGTATTTGGATGCTAAGGATAGAAAGGATTATGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATATTTTATTTGTATTTGGATGCTAAGGATAGAAAGGATTATGTAA  884

seq1  AAATAGGAGGCTAATAATATATGTAATATAGTATATTATATTTGTACTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGAGGCTAATAATATATGTAATATAGTATATTATATTTGTACTAC  934

seq1  ATTATATTATATTTTATTTATACTATATTTATAAATAGCATAATATTTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTATATTTTATTTATACTATATTTATAAATAGCATAATATTTAT  984

seq1  AATATATTATATATTATTATACATTTATTATATATTAATGTACTTATATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTATATATTATTATACATTTATTATATATTAATGTACTTATATA  1034

seq1  TACTTTTCCACAATGAGATAGGATCATTCTACAAGTTAGAATATTAGTGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTCCACAATGAGATAGGATCATTCTACAAGTTAGAATATTAGTGA  1084

seq1  AGCCTGTTGACCTGAGAAGTGTATAAGACACAACTGTCCTTTCTAGCCCT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTTGACCTGAGAAGTGTATAAGACACAACTGTCCTTTCTAGCCCT  1134

seq1  ACAGTAGTGGCATGTGAGTGCCAGCTGAGAGATGGGCTTGGGGAGTAAGA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGTGGCATGTGAGTGCCAGCTGAGAGATGGGCTTGGGGAGTAAGA  1184

seq1  ATTC  1204
      ||||
seq2  ATTC  1188

seq1: chr17_89463046_89464126
seq2: B6Ng01-157J05.g_66_1132

seq1  GAATTCCACAGGAAGAGGCAGTGTCTTCTGCATTGCTTTGTGAGCAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGGAAGAGGCAGTGTCTTCTGCATTGCTTTGTGAGCAGAGA  50

seq1  TTGTGTCCTGCAGGCTGCCTGATTAGTGGCTCTCACTCACCAATAGTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCCTGCAGGCTGCCTGATTAGTGGCTCTCACTCACCAATAGTTGG  100

seq1  TAGACTAAAGGAATGACAGAAATACGGTTATATTGTTAATTTACCTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTAAAGGAATGACAGAAATACGGTTATATTGTTAATTTACCTAAGA  150

seq1  AGCCTGGCAAAGAACATGGAGGCCAGCTGGTTTTCTAGCCAATTAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGCAAAGAACATGGAGGCCAGCTGGTTTTCTAGCCAATTAAAAGA  200

seq1  GGAAGGAGGAACAGTTAGCCCTCTAACTTCAGGCTGGCTTTTTCTCTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAGGAACAGTTAGCCCTCTAACTTCAGGCTGGCTTTTTCTCTGGC  250

seq1  ACAGTGCTGAACCCCAGGGTCCCAGGCTCTCTGTGTGCCTGGTTTTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCTGAACCCCAGGGTCCCAGGCTCTCTGTGTGCCTGGTTTTCAGC  300

seq1  TTGACTTACTCTACTTGTTCATGGGATAGTTTGTATTCTTTCACTTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTACTCTACTTGTTCATGGGATAGTTTGTATTCTTTCACTTCTCA  350

seq1  TCTGCTAAGTTCTGGGGTTACATAGTCATGCCTGGTTTACACAGGGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAAGTTCTGGGGTTACATAGTCATGCCTGGTTTACACAGGGCTTT  400

seq1  GAGCACGGTACCCAAGCAGTACACTAATGAACACACCTCCATCCTAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACGGTACCCAAGCAGTACACTAATGAACACACCTCCATCCTAAAGA  450

seq1  GAGCAATGCCCCTGTACAATAAAGAGCCTCTACGGGATCAACCCATGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATGCCCCTGTACAATAAAGAGCCTCTACGGGATCAACCCATGGCT  500

seq1  TTAGCACCTTACCTTAACCAAGATAATTGACCATGCTTGTGCCTTATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACCTTACCTTAACCAAGATAATTGACCATGCTTGTGCCTTATCTT  550

seq1  TTTCCTAAACAAGTGTTTGGGGGAGGGGAATAAGCATGCTCAGAACCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAAACAAGTGTTTGGGGGAGGGGAATAAGCATGCTCAGAACCACT  600

seq1  GGACTTTTGGTTAAAATTGTGGGACTAATTTATTATATCAAATCCCGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTTGGTTAAAATTGTGGGACTAATTTATTATATCAAATCCCGATT  650

seq1  TGGATTTCAGAATTCATTTAAATACATTAGTTTTATAATTTGCATGTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCAGAATTCATTTAAATACATTAGTTTTATAATTTGCATGTCTA  700

seq1  ATTATGGTTTTCTCTGTCACCAAGCACAAGCAATCTCTTCCCTCCATCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGTTTTCTCTGTCACCAAGCACAAGCAATCTCTTCCCTCCATCTT  750

seq1  AGGATCATTGTGTCTTTAAATGTAAGACATAAGACACAGGCATTACCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCATTGTGTCTTTAAATGTAAGACATAAGACACAGGCATTACCATA  800

seq1  GCAATGTGCTTTTCAATTAGACTGCAATTGCTGACAATAAATATGATTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTGCTTTTCAATTAGACTGCAATTGCTGACAATAAATATGATTAG  850

seq1  ACAATGTAAGTGATGGGGTAAGCCCCACAGTGTGTAAAGCATGTTGCCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTAAGTGATGGGGTAAGCCCCACAGTGTGTAAAGCATGTTGCCAA  900

seq1  TGTGCAGTGAGGAAGCAGGAAACGATTGGAAATAGTATGTGATTCCTTTG  950
      ||||||||||||||||||  ||||||||| ||||||||||||||||||||
seq2  TGTGCAGTGAGGAAGCAG--AACGATTGG-AATAGTATGTGATTCCTTTG  947

seq1  CTGCTGGCTGGCTCTATAACCTAAAGATACCTCTTATGGGAGCAACAGTT  1000
      ||||||||||||||||| ||||||||| ||||||||||||||| |||| |
seq2  CTGCTGGCTGGCTCTAT-ACCTAAAGAAACCTCTTATGGGAGC-ACAG-T  994

seq1  TATAATCTGCCAAAAGGAGACTGGTCCTCAAATGCTTCATAAACTAAAGA  1050
      ||||||||| |||||| |||||||| ||||||||| |||| |||| ||||
seq2  TATAATCTG-CAAAAGAAGACTGGTTCTCAAATGC-TCAT-AACT-AAGA  1040

seq1  TGGAAAAGCATAGATTTGAAAGGGAAGATAA  1081
      ||  ||||| |||||||| ||||||||||||
seq2  TG--AAAGC-TAGATTTG-AAGGGAAGATAA  1067