BAC Information

Click to search

BAC

Clone NameB6Ng01-158E13
Chromosome17 (Build37)
Map Location 21,608,885 - 21,708,301
singlet/doubletdoublet
Overlap geneZfp53, LOC100042508, Zfp52, BC049807
Upstream geneEG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51
Downstream geneZfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158E13.bB6Ng01-158E13.g
ACCDH952279DH952280
length1,1271,092
definitionDH952279|Mus musculus domesticus DNA, BAC clone: B6Ng01-158E13, 5' end.DH952280|Mus musculus domesticus DNA, BAC clone: B6Ng01-158E13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,608,885 - 21,609,999)(21,707,187 - 21,708,301)
sequence
gaattcttctgagaactgttatttttgttatgcttgtctttctgagaaca
gctaatattattttggcagctgcaggcttaattattttgaccgctaaaac
tatgtttttgcatttgtttagtcagcttccttatctggctctgcacttgg
cctgctagtacagtttgtaaagtccttttcaaagggggaaagtactgggt
ggtcttgaattcattttggatattacaagaggacagagcagagggggacc
aagaaggcaagagcaaaagagaggggaggggtcaaacagccccttttata
gtgagtaacatatacctggctgttgccaggcaactatggggtggagctta
gacaaaatgctaacaaacaatgtgactgaagcaattacaaaatgccattt
taaaaataactccatgagcagaacgacaagattctatgagaacttcaaag
aactaacagcaaagttatttaacatttactacttcttgacacaaaagatc
aagacttcctgcgtctactatctggtactaaagcagataaggtgctggaa
atggtggcacatacctttaaccctagctatccagaggcagagtaggctga
tttcagcaagttcaaccccagcctgtctcgaaaaaaaaaaaaaaaaattc
ccaccatgtactggtgcaaccaaacaaaaaaattacatactaatgtagtc
ttttttgttttaattgagctgagcatagtaccacatgcctttaaacacat
ttttacatagagaaagcctgacttgcatgaataaatgaacaacccccccc
aactttttattattagctatttcacattcacatatacatgtatatacaca
cagaatgtgtgtgtgcatttgtgtgcacacatcaaatgctgcccactctc
actcctacctctacactattctggtctaccaatcccaaacatgactctac
tggtgtccatatctattcatattgcttgtgatccactgaagatgaaccag
agccatttgtgagatggtgaatttaggagcctgatgtgtgctggaagcct
gatgtgcctcagcacaggataacaacctaatggccattgatttcttctcc
tacaatatatccatatgctcaatgtct
gaattcagtggagaattagttggagaaatagcctttcccagagaatagaa
catccaatatcaaatgttcacccctgaaaacatacagattgagtagggtg
tatttttatgtttgagaatccacacaaacatacaacaatatttaaaggaa
aaattatttaaaataataaatgtatgtttaaattgaaaaatgtgtacata
ccacataaaaatgattagaaggctttagaccattttctcttattcctatg
cacaaaaattacacttaatatagggatagagagatggctcagtactttca
ctgtttactgttttgtagaaatccaagttccataactaggatcaatacat
ggttcccaactgcccataactccaggtctagaatagatatgatgcaagca
aaatactcatatacatatgacataaatatctaaatggaaaatagtacaat
gcttgagcaattccaatgtgattccaaatgatcaatgcaaaagtgcagca
gatccagaacctgtccagtagcaatgaccaggtgaatgtcaccaaaatat
cataaacatgtgttgcagactagacagcctcttcacacagtagtactggg
aaaagtatctatctgcatataaaaacatgaacatgggtccaagtctctcc
taccatacaaagaatcaaagaccttcatgtaggatctgaaacagtgaatc
ctgcagaataacaaggtaatgacacttgatacaagagcaggaactgacaa
atagtactgtgtacaattaaaatatccagcgtaatactgagaattataaa
gcttgaagagacaaactctccagtagataaatatattaggtttctacagt
atatggatagaaatataaaacctattaaaattataaggaaggaaacaata
tatattataaatatgcaattagttgaacagacatactcagagcagatgaa
tgttcaatatgtacataataaaaagctcttcatttcagtcatagaatgca
aatttgctatacagagtacagttctgcatggtcagtgtccactcagagtt
ctaataataacaatgcacttgattcagtaattaatgatgtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_21608885_21609999
seq2: B6Ng01-158E13.b_46_1172

seq1  GAATTCTTCTGAGAACTGTTATTTTTGTTATGCTTGTCTTTCTGAGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGAGAACTGTTATTTTTGTTATGCTTGTCTTTCTGAGAACA  50

seq1  GCTAATATTATTTTGGCAGCTGCAGGCTTAATTATTTTGACCGCTAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATATTATTTTGGCAGCTGCAGGCTTAATTATTTTGACCGCTAAAAC  100

seq1  TATGTTTTTGCATTTGTTTAGTCAGCTTCCTTATCTGGCTCTGCACTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTTGCATTTGTTTAGTCAGCTTCCTTATCTGGCTCTGCACTTGG  150

seq1  CCTGCTAGTACAGTTTGTAAAGTCCTTTTCAAAGGGGGAAAGTACTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTAGTACAGTTTGTAAAGTCCTTTTCAAAGGGGGAAAGTACTGGGT  200

seq1  GGTCTTGAATTCATTTTGGATATTACAAGAGGACAGAGCAGAGGGGGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGAATTCATTTTGGATATTACAAGAGGACAGAGCAGAGGGGGACC  250

seq1  AAGAAGGCAAGAGCAAAAGAGAGGGGAGGGGTCAAACAGCCCCTTTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGCAAGAGCAAAAGAGAGGGGAGGGGTCAAACAGCCCCTTTTATA  300

seq1  GTGAGTAACATATACCTGGCTGTTGCCAGGCAACTATGGGGTGGAGCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTAACATATACCTGGCTGTTGCCAGGCAACTATGGGGTGGAGCTTA  350

seq1  GACAAAATGCTAACAAACAATGTGACTGAAGCAATTACAAAATGCCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAATGCTAACAAACAATGTGACTGAAGCAATTACAAAATGCCATTT  400

seq1  TAAAAATAACTCCATGAGCAGAACGACAAGATTCTATGAGAACTTCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAACTCCATGAGCAGAACGACAAGATTCTATGAGAACTTCAAAG  450

seq1  AACTAACAGCAAAGTTATTTAACATTTACTACTTCTTGACACAAAAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACAGCAAAGTTATTTAACATTTACTACTTCTTGACACAAAAGATC  500

seq1  AAGACTTCCTGCGTCTACTATCTGGTACTAAAGCAGATAAGGTGCTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTCCTGCGTCTACTATCTGGTACTAAAGCAGATAAGGTGCTGGAA  550

seq1  ATGGTGGCACATACCTTTAACCCTAGCTATCCAGAGGCAGAGTAGGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGCACATACCTTTAACCCTAGCTATCCAGAGGCAGAGTAGGCTGA  600

seq1  TTTCAGCAAGTTCAACCCCAGCCTGTCTCGAAAAAAAAAAAAAAAAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCAAGTTCAACCCCAGCCTGTCTCGAAAAAAAAAAAAAAAAATTC  650

seq1  CCACCATGTACTGGTGCAACCAAAC-AAAAAATTACATACTAATGTAGTC  699
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCACCATGTACTGGTGCAACCAAACAAAAAAATTACATACTAATGTAGTC  700

seq1  TTTTTTGTTTTAATTGAGCTGAGCATAGTACCACATGCCTTTAAACACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTAATTGAGCTGAGCATAGTACCACATGCCTTTAAACACAT  750

seq1  TTTTACATAGAGAAAGCCTGACTTGCATGAATAAATGAACAACCCCCCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATAGAGAAAGCCTGACTTGCATGAATAAATGAACAACCCCCCCC  800

seq1  AACTTTTTATTATTAGCTATTTCACATTCACATATACATGTATATACACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTTATTATTAGCTATTTCACATTCACATATACATGTATATACACA  850

seq1  CAGAATGTGTGTGTGCATTTGTGTGCACACATCAAATGCTGCCCACTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTGTGTGTGCATTTGTGTGCACACATCAAATGCTGCCCACTCTC  900

seq1  ACTCCTACCTCTCCACTATTCTGGTCTA-CAATCCCAACAGTGACTCTAC  948
      |||||||||||| ||||||||||||||| |||||||||   |||||||||
seq2  ACTCCTACCTCTACACTATTCTGGTCTACCAATCCCAAACATGACTCTAC  950

seq1  T-GTGTCCATATCTATTCATATTGCTTGTGATCCACTG-AGATGAACCAG  996
      | |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGTGTCCATATCTATTCATATTGCTTGTGATCCACTGAAGATGAACCAG  1000

seq1  AGCCATTTGTGAGACTGTGAATTT-GGAGCCTGATGTGTGCTGG-AGCCT  1044
      ||||||||||||||  |||||||| ||||||||||||||||||| |||||
seq2  AGCCATTTGTGAGATGGTGAATTTAGGAGCCTGATGTGTGCTGGAAGCCT  1050

seq1  GATGTG-CTCAGCACAGGATAACAA-CTAAAGG-CAATGA-TTCTTCTCC  1090
      |||||| |||||||||||||||||| |||| || || ||| |||||||||
seq2  GATGTGCCTCAGCACAGGATAACAACCTAATGGCCATTGATTTCTTCTCC  1100

seq1  TACAATATATCCATA-GC-CAATGTCT  1115
      ||||||||||||||| || ||||||||
seq2  TACAATATATCCATATGCTCAATGTCT  1127

seq1: chr17_21707187_21708301
seq2: B6Ng01-158E13.g_69_1160 (reverse)

seq1  GTACATTTCATTAAATTACTGAAACAAGTGCATTTGTTATTATTTAGGAA  50
      |||||  ||||| |||||||||| |||||||| |||||||||||   |||
seq2  GTACA--TCATT-AATTACTGAATCAAGTGCA-TTGTTATTATT--AGAA  44

seq1  CTTCTGAGTGGACACTGACAATGCAAAATTGGAACCTCTGTATAGCAAAT  100
      | ||||||||||||||||| ||||| || || |  |||||||||||||||
seq2  C-TCTGAGTGGACACTGACCATGCAGAACTGTA--CTCTGTATAGCAAAT  91

seq1  TTGCATTTTCTTATGACCTGAAATGTAGAGCTTTTTATTATGTACATATT  150
      |||||||    ||||| |||||||| ||||||||||||||||||||||||
seq2  TTGCATT---CTATGA-CTGAAATGAAGAGCTTTTTATTATGTACATATT  137

seq1  GAACATTTCATCTGCTCTTGAGTATGGTCTGTTCAACTAATTTGCATATT  200
      ||||| ||||||||||| ||||||| |||||||||||||| |||||||||
seq2  GAACA-TTCATCTGCTC-TGAGTAT-GTCTGTTCAACTAA-TTGCATATT  183

seq1  TATTAATTATATTATTGTTTCCTTCCTTTATAATTTTTAATAGGTTTTAT  250
      |||  | |||| |||||||||||||| |||||| ||||||||||||||||
seq2  TAT--AATATA-TATTGTTTCCTTCC-TTATAA-TTTTAATAGGTTTTAT  228

seq1  ATTTCTATCCATTATACTGTAGAAACCTAATATATTTATCTACTGGAGAG  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATCCA-TATACTGTAGAAACCTAATATATTTATCTACTGGAGAG  277

seq1  TTTGTCTCTTCAAGCTTTATAATTCTCAGTATTACGCTGGATATTTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCTTCAAGCTTTATAATTCTCAGTATTACGCTGGATATTTTAAT  327

seq1  TGTACACAGTACTATTTGTCAGTTCCTGCTCTTGTATCAAGTGTCATTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACAGTACTATTTGTCAGTTCCTGCTCTTGTATCAAGTGTCATTAC  377

seq1  CTTGTTATTCTGCAGGATTCACTGTTTCAGATCCTACATGAAGGTCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTATTCTGCAGGATTCACTGTTTCAGATCCTACATGAAGGTCTTTG  427

seq1  ATTCTTTGTATGGTAGGAGAGACTTGGACCCATGTTCATGTTTTTATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTGTATGGTAGGAGAGACTTGGACCCATGTTCATGTTTTTATATG  477

seq1  CAGATAGATACTTTTCCCAGTACTACTGTGTGAAGAGGCTGTCTAGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGATACTTTTCCCAGTACTACTGTGTGAAGAGGCTGTCTAGTCTG  527

seq1  CAACACATGTTTATGATATTTTGGTGACATTCACCTGGTCATTGCTACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACATGTTTATGATATTTTGGTGACATTCACCTGGTCATTGCTACTG  577

seq1  GACAGGTTCTGGATCTGCTGCACTTTTGCATTGATCATTTGGAATCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTTCTGGATCTGCTGCACTTTTGCATTGATCATTTGGAATCACAT  627

seq1  TGGAATTGCTCAAGCATTGTACTATTTTCCATTTAGATATTTATGTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTGCTCAAGCATTGTACTATTTTCCATTTAGATATTTATGTCATA  677

seq1  TGTATATGAGTATTTTGCTTGCATCATATCTATTCTAGACCTGGAGTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGAGTATTTTGCTTGCATCATATCTATTCTAGACCTGGAGTTAT  727

seq1  GGGCAGTTGGGAACCATGTATTGATCCTAGTTATGGAACTTGGATTTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTTGGGAACCATGTATTGATCCTAGTTATGGAACTTGGATTTCTA  777

seq1  CAAAACAGTAAACAGTGAAAGTACTGAGCCATCTCTCTATCCCTATATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAGTAAACAGTGAAAGTACTGAGCCATCTCTCTATCCCTATATTA  827

seq1  AGTGTAATTTTTGTGCATAGGAATAAGAGAAAATGGTCTAAAGCCTTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAATTTTTGTGCATAGGAATAAGAGAAAATGGTCTAAAGCCTTCTA  877

seq1  ATCATTTTTATGTGGTATGTACACATTTTTCAATTTAAACATACATTTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTTATGTGGTATGTACACATTTTTCAATTTAAACATACATTTAT  927

seq1  TATTTTAAATAATTTTTCCTTTAAATATTGTTGTATGTTTGTGTGGATTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAATAATTTTTCCTTTAAATATTGTTGTATGTTTGTGTGGATTC  977

seq1  TCAAACATAAAAATACACCCTACTCAATCTGTATGTTTTCAGGGGTGAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACATAAAAATACACCCTACTCAATCTGTATGTTTTCAGGGGTGAAC  1027

seq1  ATTTGATATTGGATGTTCTATTCTCTGGGAAAGGCTATTTCTCCAACTAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATATTGGATGTTCTATTCTCTGGGAAAGGCTATTTCTCCAACTAA  1077

seq1  TTCTCCACTGAATTC  1115
      |||||||||||||||
seq2  TTCTCCACTGAATTC  1092