BAC Information

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BAC

Clone NameB6Ng01-158J14
Chromosome17 (Build37)
Map Location 89,800,147 - 89,927,470
singlet/doubletdoublet
Overlap genenone
Upstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr, LOC100043904
Downstream geneLOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158J14.bB6Ng01-158J14.g
ACCDH952504DH952505
length1,0001,068
definitionDH952504|Mus musculus domesticus DNA, BAC clone: B6Ng01-158J14, 5' end.DH952505|Mus musculus domesticus DNA, BAC clone: B6Ng01-158J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,926,797 - 89,927,470)(89,800,147 - 89,801,231)
sequence
gaattctgtcagcgtgtgccacaaaactttcctatgtttcagctagtcac
agagaggtctagtttctgaatgacacatcagtatatatgcagacagaaac
attattttcttggtgatgcaaaccctgaaatgtacattgcatcaggcaaa
gtatgcagtattattgcaaattatctttacctatcagacattagatttca
tggggtacctcatttcagcagtgggtgatccagcctatatgctaagtaat
ccaaatttagtgtttctttcaaccatcatctccatttgccaaagcagtgg
acttcaagaattcctgtcagcaaaatgtagggcttaacataaaatttaaa
aaatctcttaattactcttttttttttattttccaaagggttaatttaat
ttttcttttttttgtaaacatggctttcagtactatgataataacattac
tactactactattattattattattattattattattattattattatta
ttatttagaaagcagaataccacccataaaataaagacaagattaaagag
ctctctagttctttttaaagcactagcaagtaaattttttccactttttt
ccttagatattttctttatttacatttcaaatgtttatcccctttcctag
cttaccctctgaaaatcccctatcccctcctacctcatcctgctcaccaa
cctacccatgcactcccacttcctggccctggcattccccatatactggg
gcataaaaacttcacaggaccaagggccactcctcccattgataacctac
taggccatcctctgctacacatgatgtgttggggtatccaggactggctg
tggtaggagtactgggtactgatgatgccaagtaatcttggtttctgttg
gtaagattcttgcgttgccttttgccatctgataatctctgggttagatg
tctgctctttctggctggagcttgtaccttctgtgagtctgtaagtcttt

gaattcaaatggaaccagatagatttgtctttcttgatttacctttgaga
gaaaagaagatggtatacaaatcccaggcctaataattgttctgccttgt
gacagagacaaatacctgcatttgagtagagaataaaagtttaaatgttt
gatagatttcttgttgtttttattgatcaaaatttctcttgccctgggac
ttaattgtatcttttgaagaaatacaattttatcttttgacttttaatag
ccaaatcttccacaagaaattgttttctataattttaagagatagaaata
ttattaaaattaggggccccttttatagttcttagttttgtttataaaat
gattcatcaagaaattcagaaagaaatctggaggaacatctcattagagt
ttgaaagacaacagagcagataatctccaaattttggtagctgtcataaa
gaaggtaagaacatcatgtcttttaagttagacatgggtatagacaagca
ggtgaatgggggataaaggctcttttatttatatacctatattaacccta
ttctttattgcatttaggtatttatgaattacatggtattttttataatt
tttattaggtattttcctcatttacatttccaatgctatccccaaagtcc
cccataccctccctcccaccccctacccacccactcccactttttggccc
tggattttccctgtactagggcatataaagtttgcaagtccaattggcct
ctctttccagtgatggcctacaaagccatcttttgatacatatgcagcta
gagtcaagatctccagggtactggttagttcataatgttgttccacctat
agggttcagatccctccagctacttggttactttatctatctcctccatt
ggggccctatgatccatccatagctgactatgagcatccacttatgtgtt
gttaggcccagaataagtctcacagagacagctatatcaggtcttttagc
aaatctgctagtgtgtgcatggtgtagcatggagcttgtcttggatgatc
ccagaattggcagtctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_89926797_89927470
seq2: B6Ng01-158J14.b_42_716 (reverse)

seq1  GGATAGGGGATTTTCAGAGGGTAAGCTAGGAAAGGGGAT-AACATTTGAA  49
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGATAGGGGATTTTCAGAGGGTAAGCTAGGAAAGGGGATAAACATTTGAA  50

seq1  ATGTAAATAAAGAAAATATCTAAGGAAAAAAGTGGAAAAAATTTACTTGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATAAAGAAAATATCTAAGGAAAAAAGTGGAAAAAATTTACTTGC  100

seq1  TAGTGCTTTAAAAAGAACTAGAGAGCTCTTTAATCTTGTCTTTATTTTAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTTTAAAAAGAACTAGAGAGCTCTTTAATCTTGTCTTTATTTTAT  150

seq1  GGGTGGTATTCTGCTTTCTAAATAATAATAATAATAATAATAATAATAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTATTCTGCTTTCTAAATAATAATAATAATAATAATAATAATAAT  200

seq1  AATAATAATAATAATAGTAGTAGTAGTAATGTTATTATCATAGTACTGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATAATAATAGTAGTAGTAGTAATGTTATTATCATAGTACTGAA  250

seq1  AGCCATGTTTACAAAAAAAAGAAAAATTAAATTAACCCTTTGGAAAATAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGTTTACAAAAAAAAGAAAAATTAAATTAACCCTTTGGAAAATAA  300

seq1  AAAAAAAAGAGTAATTAAGAGATTTTTTAAATTTTATGTTAAGCCCTACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAGTAATTAAGAGATTTTTTAAATTTTATGTTAAGCCCTACA  350

seq1  TTTTGCTGACAGGAATTCTTGAAGTCCACTGCTTTGGCAAATGGAGATGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGACAGGAATTCTTGAAGTCCACTGCTTTGGCAAATGGAGATGA  400

seq1  TGGTTGAAAGAAACACTAAATTTGGATTACTTAGCATATAGGCTGGATCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAAAGAAACACTAAATTTGGATTACTTAGCATATAGGCTGGATCA  450

seq1  CCCACTGCTGAAATGAGGTACCCCATGAAATCTAATGTCTGATAGGTAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGCTGAAATGAGGTACCCCATGAAATCTAATGTCTGATAGGTAAA  500

seq1  GATAATTTGCAATAATACTGCATACTTTGCCTGATGCAATGTACATTTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTGCAATAATACTGCATACTTTGCCTGATGCAATGTACATTTCA  550

seq1  GGGTTTGCATCACCAAGAAAATAATGTTTCTGTCTGCATATATACTGATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGCATCACCAAGAAAATAATGTTTCTGTCTGCATATATACTGATG  600

seq1  TGTCATTCAGAAACTAGACCTCTCTGTGACTAGCTGAAACATAGGAAAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTCAGAAACTAGACCTCTCTGTGACTAGCTGAAACATAGGAAAGT  650

seq1  TTTGTGGCACACGCTGACAGAATTC  674
      |||||||||||||||||||||||||
seq2  TTTGTGGCACACGCTGACAGAATTC  675

seq1: chr17_89800147_89801231
seq2: B6Ng01-158J14.g_65_1132

seq1  GAATTCAAATGGAACCAGATAGATTTGTCTTTCTTGATTTACCTTTGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGGAACCAGATAGATTTGTCTTTCTTGATTTACCTTTGAGA  50

seq1  GAAAAGAAGATGGTATACAAATCCCAGGCCTAATAATTGTTCTGCCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAGATGGTATACAAATCCCAGGCCTAATAATTGTTCTGCCTTGT  100

seq1  GACAGAGACAAATACCTGCATTTGAGTAGAGAATAAAAGTTTAAATGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGACAAATACCTGCATTTGAGTAGAGAATAAAAGTTTAAATGTTT  150

seq1  GATAGATTTCTTGTTGTTTTTATTGATCAAAATTTCTCTTGCCCTGGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATTTCTTGTTGTTTTTATTGATCAAAATTTCTCTTGCCCTGGGAC  200

seq1  TTAATTGTATCTTTTGAAGAAATACAATTTTATCTTTTGACTTTTAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTATCTTTTGAAGAAATACAATTTTATCTTTTGACTTTTAATAG  250

seq1  CCAAATCTTCCACAAGAAATTGTTTTCTATAATTTTAAGAGATAGAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCTTCCACAAGAAATTGTTTTCTATAATTTTAAGAGATAGAAATA  300

seq1  TTATTAAAATTAGGGGCCCCTTTTATAGTTCTTAGTTTTGTTTATAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAATTAGGGGCCCCTTTTATAGTTCTTAGTTTTGTTTATAAAAT  350

seq1  GATTCATCAAGAAATTCAGAAAGAAATCTGGAGGAACATCTCATTAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATCAAGAAATTCAGAAAGAAATCTGGAGGAACATCTCATTAGAGT  400

seq1  TTGAAAGACAACAGAGCAGATAATCTCCAAATTTTGGTAGCTGTCATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGACAACAGAGCAGATAATCTCCAAATTTTGGTAGCTGTCATAAA  450

seq1  GAAGGTAAGAACATCATGTCTTTTAAGTTAGACATGGGTATAGACAAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTAAGAACATCATGTCTTTTAAGTTAGACATGGGTATAGACAAGCA  500

seq1  GGTGAATGGGGGATAAAGGCTCTTTTATTTATATACCTATATTAACCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATGGGGGATAAAGGCTCTTTTATTTATATACCTATATTAACCCTA  550

seq1  TTCTTTATTGCATTTAGGTATTTATGAATTACATGGTATTTTTTATAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATTGCATTTAGGTATTTATGAATTACATGGTATTTTTTATAATT  600

seq1  TTTATTAGGTATTTTCCTCATTTACATTTCCAATGCTATCCCCAAAGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAGGTATTTTCCTCATTTACATTTCCAATGCTATCCCCAAAGTCC  650

seq1  CCCATACCCTCCCTCCCACCCCCTACCCACCCACTCCCACTTTTTGGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACCCTCCCTCCCACCCCCTACCCACCCACTCCCACTTTTTGGCCC  700

seq1  TGGATTTTCCCTGTACTAGGGCATATAAAGTTTGCAAGTCCAATTGGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTCCCTGTACTAGGGCATATAAAGTTTGCAAGTCCAATTGGCCT  750

seq1  CTCTTTCCAGTGATGGCCTACAAAGCCATCTTTTGATACATATGCAGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCAGTGATGGCCTACAAAGCCATCTTTTGATACATATGCAGCTA  800

seq1  GAGTCAAGATCTCCAGGGTACTGGTTAGTTCATAATGTTGTTCCACCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAGATCTCCAGGGTACTGGTTAGTTCATAATGTTGTTCCACCTAT  850

seq1  AGGGTTGCAGATCCCCCCAGCTACTTGGTTACTTTATCTAGCTCCTCCAT  900
      |||||| |||||||| |||||||||||||||||||||||| |||||||||
seq2  AGGGTT-CAGATCCCTCCAGCTACTTGGTTACTTTATCTATCTCCTCCAT  899

seq1  TGGGGGCCCTATGATCCATCCAATAGCTGACTATGAGCATCCACTTATGT  950
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  T-GGGGCCCTATGATCCATCC-ATAGCTGACTATGAGCATCCACTTATGT  947

seq1  GTTTGTTAGGCCCCAGAAT-AGTCTCACAAGAGACAGCTATATCAGGGTC  999
      | |||||||| |||||||| |||||||| ||||||||||||||||||   
seq2  G-TTGTTAGG-CCCAGAATAAGTCTCAC-AGAGACAGCTATATCAGG--T  992

seq1  CTTTCAGCAAAATCTTGCTAGTGTGTGCAATGGTGTCAGCATTTGGAGGC  1049
      |||| ||| ||||| ||||||||||||| ||||||| ||||  |||||  
seq2  CTTTTAGC-AAATC-TGCTAGTGTGTGC-ATGGTGT-AGCA--TGGAGCT  1036

seq1  TGTCTATGGGATGGATCCCCAGATATGGCAGTCTCT  1085
      ||||  | |||| ||| ||||||  |||||||||||
seq2  TGTC--TTGGAT-GAT-CCCAGAATTGGCAGTCTCT  1068