BAC Information

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BAC

Clone NameB6Ng01-158L06
Chromosome17 (Build37)
Map Location 76,627,561 - 76,778,097
singlet/doubletdoublet
Overlap geneLOC100043886
Upstream geneLtbp1, Rasgrp3, 2810405J04Rik, LOC668787, LOC100043885
Downstream geneEG624348, LOC545234
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158L06.bB6Ng01-158L06.g
ACCDH952583DH952584
length1,2341,114
definitionDH952583|Mus musculus domesticus DNA, BAC clone: B6Ng01-158L06, 5' end.DH952584|Mus musculus domesticus DNA, BAC clone: B6Ng01-158L06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,627,561 - 76,628,542)(76,776,981 - 76,778,097)
sequence
gaattcaactgctccttctagcagtgaatggcaagggtgggaggcctcca
aagatttcaatgttagagctcttcaatgtacagcttattagaaaacagct
cttttagacaacagtcaatgaaacagcttttgctctttatttggggtgag
caaggactatgtaaacctgagtgggatggaatttttcttagggtgacatt
tcactgactgaggtttaagtttctgggcatacttccttttcatggagagg
catttcaggaatttgaacctgtaattttgcaatgacattcttcaggtaga
gtgtggggatttggctccccatatagggtagagaagatgaagctctgcta
ggaaagggaatcgtctattttgcacccacctcagggaagctgtctggaca
tgggtgacttgaaccttaagtagcagggtttctcaactatacaggtctaa
ctgcatgtttgcttgtagaagaaagcaaatagagtctatttatcaccctt
cacaaaactcaagtacaagtagatcaaagattcaacataaaaccagatat
actaaatctcaaagaagagaaaatgagggatagccttaaacacatttaca
taggagacaacttcctgaacaaagcaccaacagctcaggcacatagatca
acaattaataaatgagacttcatgaaactgaaaatcctcagtaaggcaaa
tgataccttaaataggacaaaatgacagcctacagaatggggaaagattg
tcattagtcctacatccaaaagagatgatgtccacattcttgtggtgggc
ctcttacttccactttctataaaaagttttctgttatctactgtaggttc
ttagctgtcatgggtgctatagtttatgcaccaacccttttcatgaaagt
tccagagaaaatcaaagtggatctagttgactctgaagaacacacctgtg
tttttcatagccagatggaaatggacatcagtaatgtgagtgtcaaggta
gagagatgtccctagagagcagacagcacatgctcagatcattgacttct
tagtatctgcttaataaagggcttattcttttctaatgtcaatcagctgg
attattggatgatgctcaatttatgctataaccaagctctcagaattatc
attctaggcattcagtattggaaatgtcttggatgtctcctcaatgactg
tgatgaaatatgtctcttaaagtcacacgcgctc
gaattctatctacttgaccttacacaaatgtgtatatttagtggtataca
agataaactaaagatcataggctatatatttgtctatcttaagattttct
cttagctaaaaatttctgtaattccatttcaattgacacacacacaaatt
tggaaaaagaatccaaataattctatattgggacactaatttaattttta
tctctttgatattattcacaatactgcataagtatctagcccatctaacc
ttctatactgatgcatttctgttcttggaaaagatttccagtaatgagat
agctgggtcaaagttttttttggaaaattcagttttaatagctactaccc
aattgactttccagaggcttgccacatttccctcagtacctgagagtcat
tctcactctacagcacctttgacaaaacagtggaacagtgtcagtatagt
tcttagcaacaatcacatttctttctttttagattttaaaccattatatt
gtgataaatttatgactaatgcatttttaagatagtgtttttatattcat
tacattggatactattttatcctgtttaattaatctagtggtatattctc
agtagtcagacattcatcctatcatatctaatttagactgtgtggagaga
gaataagagagagagagagagaagctgggcatggtggcacactcctttaa
tcccagcactcgggaggcagaggcaggtggatttttgagttcgaggtcac
tcactacaaaatgagttccaggacagccccagggctatacagagaaaccc
tgtctcgaaacgcccccccccccccaccaaaataagagagagacagagag
acagacagagacagagacagacagtcagacagagacacacacatacacac
acagagaaatggagacagagaaacacagagacagagagagacagagacag
agaagcatattactacatgtctttatcctagaactcacaagtggaggtac
aaagatcatgaattcaataatagttttgttaaataaaagagtttgagaca
agtctattgtaaaggtttattcacaaaaaacaaacttatgtggtgtgtgt
ggtgttggtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_76627561_76628542
seq2: B6Ng01-158L06.b_329_1276

seq1  ATTCTTCAGGTAGAGTGTGGGGATTTGGCTCCCCATATAGGGTAGAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCAGGTAGAGTGTGGGGATTTGGCTCCCCATATAGGGTAGAGAAG  50

seq1  ATGAAGCTCTGCTAGGAAAGGGAATCGTCTATTTTGCACCCACCTCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCTCTGCTAGGAAAGGGAATCGTCTATTTTGCACCCACCTCAGGG  100

seq1  AAGCTGTCTGGACATGGGTGACTTGAACCTTAAGTAGCAGGGTTTCTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTCTGGACATGGGTGACTTGAACCTTAAGTAGCAGGGTTTCTCAA  150

seq1  CTATACAGGTCTAACTGCATGTTTGCTTGTAGAAGAAAGCAAATAGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAGGTCTAACTGCATGTTTGCTTGTAGAAGAAAGCAAATAGAGTC  200

seq1  TATTTATCACCCTTCACAAAACTCAAGTACAAGTAGATCAAAGATTCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATCACCCTTCACAAAACTCAAGTACAAGTAGATCAAAGATTCAAC  250

seq1  ATAAAACCAGATATACTAAATCTCAAAGAAGAGAAAATGAGGGATAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCAGATATACTAAATCTCAAAGAAGAGAAAATGAGGGATAGCCT  300

seq1  TAAACACATTTACATAGGAGACAACTTCCTGAACAAAGCACCAACAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACATTTACATAGGAGACAACTTCCTGAACAAAGCACCAACAGCTC  350

seq1  AGGCACATAGATCAACAATTAATAAATGAGACTTCATGAAACTGAAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACATAGATCAACAATTAATAAATGAGACTTCATGAAACTGAAAATC  400

seq1  CTCAGTAAGGCAAATGATACCTTAAATAGGACAAAATGACAGCCTACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAAGGCAAATGATACCTTAAATAGGACAAAATGACAGCCTACAGA  450

seq1  ATGGGGAAAGATTGTCATTAGTCCTACATCCAAAAGAGATGATGTCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAAAGATTGTCATTAGTCCTACATCCAAAAGAGATGATGTCCACA  500

seq1  TTCTTGTGGTGGGCCTCTTACTTCCACTTTCTATAAAAAGTTTTCTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGGTGGGCCTCTTACTTCCACTTTCTATAAAAAGTTTTCTGTTA  550

seq1  TCTACTGTAGGTTCTTAGCTGTCATGGGTGCTATAGTTTATGCACCAA-C  599
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTACTGTAGGTTCTTAGCTGTCATGGGTGCTATAGTTTATGCACCAACC  600

seq1  CTTTTCATGAAAGTTCCAAGAGAAAATCAAAGTGGATCTAGTTGACTCTG  649
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTTTCATGAAAGTTCC-AGAGAAAATCAAAGTGGATCTAGTTGACTCTG  649

seq1  AAGAACACACCTGTGTTTTTCATAGCCAGATGGAAATGGACATCAGTAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACACCTGTGTTTTTCATAGCCAGATGGAAATGGACATCAGTAAT  699

seq1  GTGAGTGTCAAGGTAGAAGAGATGTCCCTAGAAGGAAGCAAGACAAGCAC  749
      |||||||||||||||| |||||||||||||||    ||| |||| |||||
seq2  GTGAGTGTCAAGGTAG-AGAGATGTCCCTAGA---GAGC-AGAC-AGCAC  743

seq1  ATGCTCAGATCATTGACTTCCTTTAGTATCTGCTTCATAAAGGGCCTATT  799
      ||||||||||||||||||||  ||||||||||||| ||||||||| ||||
seq2  ATGCTCAGATCATTGACTTC--TTAGTATCTGCTTAATAAAGGGCTTATT  791

seq1  CTTTTCTTAAATTGTCAAATTCAGCTTGAATTTATTGAATAGATTGCTCA  849
      |||||||   | ||||||  |||||| ||  |||||| || || ||||||
seq2  CTTTTCT---AATGTCAA--TCAGCTGGA--TTATTGGAT-GA-TGCTCA  832

seq1  TTTTATGCTAATAAATCTAAGAGCTCCCAAGAAATCTACCAATTCTAAGG  899
       |||||||| ||||  | |||  |||   |||| | |    ||||||  |
seq2  ATTTATGCT-ATAA--CCAAGCTCTC---AGAATTAT---CATTCTA--G  871

seq1  GCATTTCAGTATAGGAAATAATTGTCCCTTG--TTTCTCCTCTAATGACT  947
      ||| |||||||| |||||    |||  ||||  | ||||||| |||||||
seq2  GCA-TTCAGTATTGGAAA----TGT--CTTGGATGTCTCCTC-AATGACT  913

seq1  GTGATGAAAATTATGT-TCTTAAGTTCACACG-GCTC  982
      |||||||||  ||||| ||||||  ||||||| ||||
seq2  GTGATGAAA--TATGTCTCTTAAAGTCACACGCGCTC  948

seq1: chr17_76776981_76778097
seq2: B6Ng01-158L06.g_66_1179 (reverse)

seq1  CACACACACACACACACACACA-CACATAAGTATGTTTTTTGTGATAAGA  49
      |||||||  |||| |||||||| ||||||||| ||||||||||||  | |
seq2  CACACACCAACAC-CACACACACCACATAAGTTTGTTTTTTGTGAATAAA  49

seq1  CCTTATGACAATAGACCTAGTCTCAAACTCTCTATGTTAACAAAACTATT  99
      |||  | |||||||| || |||||||||||| |   ||||||||||||||
seq2  CCT--TTACAATAGA-CTTGTCTCAAACTCTTTTATTTAACAAAACTATT  96

seq1  ATTGAATTCATGATCTTTGTACCTCCACCTGTGAGTTCTAGGATAAAAGA  149
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  ATTGAATTCATGATCTTTGTACCTCCACTTGTGAGTTCTAGGAT-AAAGA  145

seq1  CATGTAGTAATATGCTTCTCTGTCTCTGTCTCTCTCTGTCTCTGTGTTTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGTAATATGCTTCTCTGTCTCTGTCTCTCTCTGTCTCTGTGTTTC  195

seq1  TCTGTCTCCATTTCTCTGTGTGTGTATGTGTGTGTCTCTGTCTGACTGTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCCATTTCTCTGTGTGTGTATGTGTGTGTCTCTGTCTGACTGTC  245

seq1  TGTCTCTGTCTCTGTCTGTCTCTCTGTCTCTCTCTTATTTTGGT-GGGGG  298
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTCTCTGTCTCTGTCTGTCTCTCTGTCTCTCTCTTATTTTGGTGGGGGG  295

seq1  GGGGGGGCGTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGGGCTGTCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGCGTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGGGCTGTCCT  345

seq1  GGAACTCATTTTGTAGTGAGTGACCTCGAACTCAAAAATCCACCTGCCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCATTTTGTAGTGAGTGACCTCGAACTCAAAAATCCACCTGCCTC  395

seq1  TGCCTCCCGAGTGCTGGGATTAAAGGAGTGTGCCACCATGCCCAGCTTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCGAGTGCTGGGATTAAAGGAGTGTGCCACCATGCCCAGCTTCT  445

seq1  CTCTCTCTCTCTCTTATTCTCTCTCCACACAGTCTAAATTAGATATGATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTTATTCTCTCTCCACACAGTCTAAATTAGATATGATA  495

seq1  GGATGAATGTCTGACTACTGAGAATATACCACTAGATTAATTAAACAGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAATGTCTGACTACTGAGAATATACCACTAGATTAATTAAACAGGA  545

seq1  TAAAATAGTATCCAATGTAATGAATATAAAAACACTATCTTAAAAATGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGTATCCAATGTAATGAATATAAAAACACTATCTTAAAAATGCA  595

seq1  TTAGTCATAAATTTATCACAATATAATGGTTTAAAATCTAAAAAGAAAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCATAAATTTATCACAATATAATGGTTTAAAATCTAAAAAGAAAGA  645

seq1  AATGTGATTGTTGCTAAGAACTATACTGACACTGTTCCACTGTTTTGTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGATTGTTGCTAAGAACTATACTGACACTGTTCCACTGTTTTGTCA  695

seq1  AAGGTGCTGTAGAGTGAGAATGACTCTCAGGTACTGAGGGAAATGTGGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCTGTAGAGTGAGAATGACTCTCAGGTACTGAGGGAAATGTGGCA  745

seq1  AGCCTCTGGAAAGTCAATTGGGTAGTAGCTATTAAAACTGAATTTTCCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTGGAAAGTCAATTGGGTAGTAGCTATTAAAACTGAATTTTCCAA  795

seq1  AAAAAACTTTGACCCAGCTATCTCATTACTGGAAATCTTTTCCAAGAACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTTTGACCCAGCTATCTCATTACTGGAAATCTTTTCCAAGAACA  845

seq1  GAAATGCATCAGTATAGAAGGTTAGATGGGCTAGATACTTATGCAGTATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCATCAGTATAGAAGGTTAGATGGGCTAGATACTTATGCAGTATT  895

seq1  GTGAATAATATCAAAGAGATAAAAATTAAATTAGTGTCCCAATATAGAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAATATCAAAGAGATAAAAATTAAATTAGTGTCCCAATATAGAAT  945

seq1  TATTTGGATTCTTTTTCCAAATTTGTGTGTGTGTCAATTGAAATGGAATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGATTCTTTTTCCAAATTTGTGTGTGTGTCAATTGAAATGGAATT  995

seq1  ACAGAAATTTTTAGCTAAGAGAAAATCTTAAGATAGACAAATATATAGCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATTTTTAGCTAAGAGAAAATCTTAAGATAGACAAATATATAGCC  1045

seq1  TATGATCTTTAGTTTATCTTGTATACCACTAAATATACACATTTGTGTAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCTTTAGTTTATCTTGTATACCACTAAATATACACATTTGTGTAA  1095

seq1  GGTCAAGTAGATAGAATTC  1117
      |||||||||||||||||||
seq2  GGTCAAGTAGATAGAATTC  1114