BAC Information

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BAC

Clone NameB6Ng01-158P09
Chromosome17 (Build37)
Map Location 59,680,908 - 59,859,464
singlet/doubletdoublet
Overlap geneLOC100043542
Upstream geneLOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537
Downstream geneLOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158P09.bB6Ng01-158P09.g
ACCDH952767DH952768
length1,123999
definitionDH952767|Mus musculus domesticus DNA, BAC clone: B6Ng01-158P09, 5' end.DH952768|Mus musculus domesticus DNA, BAC clone: B6Ng01-158P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,680,908 - 59,682,052)(59,858,461 - 59,859,464)
sequence
gaattctctgtagtggtgacagtgtgtggatgtgctgcatctccttcatt
tgtgccccagattctcttttccctgcagatctgactgcatggatgaccaa
ggaccacggttctatttctgtttcaagttagaggtctgaaataagaagaa
ccaatatcagatttggagaggagtgtggaacactggcaccgagatgagta
ttttcacagttttcctgattacaggtcatatgtgtttttatagttcactt
ctactaaaatccacaatgtttagcatgttatcctattcaataactacctt
ctggaacagaagaaggattcgttttatcatatttctggagctaggcttcc
ttgatgtcttctcaggaacaaaatgccgagcttcactatataaccttctt
tctaccaatgtgttttataaagcaagtgtgaggaatgttcaagttcatgt
caatttcacacatggcactgagataatacatagtacttatcatttataaa
caacttaatgcataatataaggagtaattgcaaacattttcttctcttta
gcaaatattgtagttggaaaaattaaaaattaaaagagtagagtaatatt
aacatacattaaatacatattaatgtgatctctgtctacattcgtttttc
aaatgttatatatttaataagaagtaaatatttatattttctttgttttg
tttttttcttttttctgccaaaaagttctaaaagaaaacccctccaaatc
gctatttctctgtcagtgtgaaagtaatccatccccttcactctgggagc
atatttaaacagaatacattatttgagaaataataaaaacagagaagaga
aattaaaatttatctcccagttttttctgcatatctcacatctggaaaat
tgaaatgaattcctagtagctagtggcaacaatggatttaaactatataa
tctaccttctcattcatcacaaaattacatagaaagacaaaacaattata
taattccacagcatcatattagagaaacattaaattgtcaacactagcag
aattaaacagaacatgcagcatactacctagaaacacatccttaggtgtc
tcatgggagagcaggacgagtat
gaattcaaggtaacaaaatgtttagggcatgatattaccttaatattggc
tttgttaatctttatttccttcaatctacttaatattttgataaatacta
agttgcaaaattattagaataaattttttcaattatagttaaaagtgtat
taaataatggtttgctaaaattggtaaacacgaataattgaatttttgac
ataattaagcagaaggtatgaaattgtgtggcaggaaaactggtttggat
ctgggaggaatacagaaggggagaaggtgtgtatggcggtggacactctc
ttagaagcaggcagagaggaggaatgggatttggaactgggggggagggg
cagactgagatgaggtaataactggattgcaaaaaattaataaaagaaag
agaaaaaaaggaaactggaaaagattcattttacaaaaaattctcatgca
aactaataaatccaagaaaaagtaatgctagttagaatatgatcattcca
caataaataatcagattttatcccttttccttagttccaaacttaggctt
aaattggccatttctgtcttttatgtccaatctcaaacaataaggtaaat
cttcatcttaaaaacaacatgcttccatactgtttgcaatttcttttcaa
aagaactccgaagaaaattgtgtatgtttataaataggacattttcttga
tagctgacagaaattctattatgaaataaaatggttttgaacattttaaa
atatctacatctagacttcctacacgtttctttctttaagggattcctgt
tcatgctgtaggctacataacacctttctaagaaaaagtctatagattaa
cattaattgatattttaaaagttgtatttaaataataatgtttagtgctt
ccctatttcatttaaaagcaagactttatatttatttttaactcttttat
ttttatgggttattacttaaatttcttttcggctttcttttttcatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_59680908_59682052
seq2: B6Ng01-158P09.b_46_1168

seq1  GAATTCTCTGTAGTGGTGACAGTGTGTGGATGTGCTGCATCTCCTTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTAGTGGTGACAGTGTGTGGATGTGCTGCATCTCCTTCATT  50

seq1  TGTGCCCCAGATTCTCTTTTCCCTGCAGATCTGACTGCATGGATGACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCCAGATTCTCTTTTCCCTGCAGATCTGACTGCATGGATGACCAA  100

seq1  GGACCACGGTTCTATTTCTGTTTCAAGTTAGAGGTCTGAAATAAGAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACGGTTCTATTTCTGTTTCAAGTTAGAGGTCTGAAATAAGAAGAA  150

seq1  CCAATATCAGATTTGGAGAGGAGTGTGGAACACTGGCACCGAGATGAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATCAGATTTGGAGAGGAGTGTGGAACACTGGCACCGAGATGAGTA  200

seq1  TTTTCACAGTTTTCCTGATTACAGGTCATATGTGTTTTTATAGTTCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAGTTTTCCTGATTACAGGTCATATGTGTTTTTATAGTTCACTT  250

seq1  CTACTAAAATCCACAATGTTTAGCATGTTATCCTATTCAATAACTACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAAAATCCACAATGTTTAGCATGTTATCCTATTCAATAACTACCTT  300

seq1  CTGGAACAGAAGAAGGATTCGTTTTATCATATTTCTGGAGCTAGGCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACAGAAGAAGGATTCGTTTTATCATATTTCTGGAGCTAGGCTTCC  350

seq1  TTGATGTCTTCTCAGGAACAAAATGCCGAGCTTCACTATATAACCTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTCTTCTCAGGAACAAAATGCCGAGCTTCACTATATAACCTTCTT  400

seq1  TCTACCAATGTGTTTTATAAAGCAAGTGTGAGGAATGTTCAAGTTCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCAATGTGTTTTATAAAGCAAGTGTGAGGAATGTTCAAGTTCATGT  450

seq1  CAATTTCACACATGGCACTGAGATAATACATAGTACTTATCATTTATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCACACATGGCACTGAGATAATACATAGTACTTATCATTTATAAA  500

seq1  CAACTTAATGCATAATATAAGGAGTAATTGCAAACATTTTCTTCTCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTAATGCATAATATAAGGAGTAATTGCAAACATTTTCTTCTCTTTA  550

seq1  GCAAATATTGTAGTTGGAAAAATTAAAAATTAAAAGAGTAGAGTAATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATATTGTAGTTGGAAAAATTAAAAATTAAAAGAGTAGAGTAATATT  600

seq1  AACATACATTAAATACATATTAATGTGATCTCTGTCTACATTCGTTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACATTAAATACATATTAATGTGATCTCTGTCTACATTCGTTTTTC  650

seq1  AAATGTTATATATTTAATAAGAAGTAAATATTTATATTTTCTTTGTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTATATATTTAATAAGAAGTAAATATTTATATTTTCTTTGTTTTG  700

seq1  TTTTTTTCTTTTTTCTGCCAAAAAGTTCTAAAAGAAAACCCC-CCAAATC  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTTTTTCTTTTTTCTGCCAAAAAGTTCTAAAAGAAAACCCCTCCAAATC  750

seq1  GCTATTTCTCTGTCAGTGTGAAAGTAATCCATCCCCTTCACTCTGGGAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTCTCTGTCAGTGTGAAAGTAATCCATCCCCTTCACTCTGGGAGC  800

seq1  ATATTTAAACAGAATACATTATTTGAGAAATAAT-AAAACAGAGAAGAGA  848
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATATTTAAACAGAATACATTATTTGAGAAATAATAAAAACAGAGAAGAGA  850

seq1  AATT-AAATTTATCTCCCAG-TTTTTCTGCATA-CCCACATCTGGAAAAT  895
      |||| ||||||||||||||| |||||||||||| | ||||||||||||||
seq2  AATTAAAATTTATCTCCCAGTTTTTTCTGCATATCTCACATCTGGAAAAT  900

seq1  TGAAATGAATTCCTAGTAGCTAGTGGCAACAATGGATTTAAACTATATAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGAATTCCTAGTAGCTAGTGGCAACAATGGATTTAAACTATATAA  950

seq1  TCTACCTTCCCATTCAATCACAAAAATTACATAGAAAGGAACAAAAACAA  995
      ||||||||| ||||| ||||| ||||||||||||||||  || |||||||
seq2  TCTACCTTCTCATTC-ATCAC-AAAATTACATAGAAAG--AC-AAAACAA  995

seq1  TTATATAAAATCCACAGCCATCATAATTAGAAGAAAACATTAAAATGTCA  1045
      |||||| || ||||||| |||||| ||||||   |||||||||| |||| 
seq2  TTATAT-AATTCCACAG-CATCAT-ATTAGA--GAAACATTAAATTGTC-  1039

seq1  AACAACCTAGCAGAATAAAACAAGAACAATGCAAGCAATACTACCCAAGA  1095
      ||||  |||||||||| |||| ||||| |||| ||| |||||||| |  |
seq2  AACA--CTAGCAGAATTAAAC-AGAAC-ATGC-AGC-ATACTACCTAGAA  1083

seq1  ACACCAACAAACCCCTTAAGGTGTCTCATGGGAGAGGCAAGGACGAGTAT  1145
      ||||      | ||  | ||||||||||||||||||   |||||||||||
seq2  ACAC------ATCC--TTAGGTGTCTCATGGGAGAG--CAGGACGAGTAT  1123

seq1: chr17_59858461_59859464
seq2: B6Ng01-158P09.g_67_1065 (reverse)

seq1  AAAATGAAAAAAGAAAGCCAGAAAAAAGAAATATAAGTAAATAACCAATA  50
      |||||||||||||||||||    ||||||||| ||||| ||||||| || 
seq2  AAAATGAAAAAAGAAAGCC---GAAAAGAAATTTAAGT-AATAACCCAT-  45

seq1  AAAAATAAAAGAATATAAAAATAAATATAAAGTCTTGCTTTTAAATGGAA  100
      |||||||||||| | |||||||||||||||||||||||||||||||| ||
seq2  AAAAATAAAAGAGT-TAAAAATAAATATAAAGTCTTGCTTTTAAATGAAA  94

seq1  TAGGG-AGCACTAAACATTATTATTTAAATACAACTTTTAAAATATCAAT  149
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAGCACTAAACATTATTATTTAAATACAACTTTTAAAATATCAAT  144

seq1  TAATGTTAATCTATAGACTTTTTCTTAGAAAGGTGTTATGTAGCCTACAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTAATCTATAGACTTTTTCTTAGAAAGGTGTTATGTAGCCTACAG  194

seq1  CATGAACAGGAATCCCTTAAAGAAAGAAACGTGTAGGAAGTCTAGATGTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACAGGAATCCCTTAAAGAAAGAAACGTGTAGGAAGTCTAGATGTA  244

seq1  GATATTTTAAAATGTTCAAAACCATTTTATTTCATAATAGAATTTCTGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTAAAATGTTCAAAACCATTTTATTTCATAATAGAATTTCTGTC  294

seq1  AGCTATCAAGAAAATGTCCTATTTATAAACATACACAATTTTCTTCGGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCAAGAAAATGTCCTATTTATAAACATACACAATTTTCTTCGGAG  344

seq1  TTCTTTTGAAAAGAAATTGCAAACAGTATGGAAGCATGTTGTTTTTAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGAAAAGAAATTGCAAACAGTATGGAAGCATGTTGTTTTTAAGA  394

seq1  TGAAGATTTACCTTATTGTTTGAGATTGGACATAAAAGACAGAAATGGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATTTACCTTATTGTTTGAGATTGGACATAAAAGACAGAAATGGCC  444

seq1  AATTTAAGCCTAAGTTTGGAACTAAGGAAAAGGGATAAAATCTGATTATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGCCTAAGTTTGGAACTAAGGAAAAGGGATAAAATCTGATTATT  494

seq1  TATTGTGGAATGATCATATTCTAACTAGCATTACTTTTTCTTGGATTTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGGAATGATCATATTCTAACTAGCATTACTTTTTCTTGGATTTAT  544

seq1  TAGTTTGCATGAGAATTTTTTGTAAAATGAATCTTTTCCAGTTTCCTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGCATGAGAATTTTTTGTAAAATGAATCTTTTCCAGTTTCCTTTT  594

seq1  TTTCTCTTTCTTTTATTAATTTTTTGCAATCCAGTTATTACCTCATCTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTCTTTTATTAATTTTTTGCAATCCAGTTATTACCTCATCTCA  644

seq1  GTCTGCCCCTCCCCCCCAGTTCCAAATCCCATTCCTCCTCTCTGCCTGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCCCTCCCCCCCAGTTCCAAATCCCATTCCTCCTCTCTGCCTGCT  694

seq1  TCTAAGAGAGTGTCCACCGCCATACACACCTTCTCCCCTTCTGTATTCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAGAGTGTCCACCGCCATACACACCTTCTCCCCTTCTGTATTCCT  744

seq1  CCCAGATCCAAACCAGTTTTCCTGCCACACAATTTCATACCTTCTGCTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATCCAAACCAGTTTTCCTGCCACACAATTTCATACCTTCTGCTTA  794

seq1  ATTATGTCAAAAATTCAATTATTCGTGTTTACCAATTTTAGCAAACCATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTCAAAAATTCAATTATTCGTGTTTACCAATTTTAGCAAACCATT  844

seq1  ATTTAATACACTTTTAACTATAATTGAAAAAATTTATTCTAATAATTTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATACACTTTTAACTATAATTGAAAAAATTTATTCTAATAATTTTG  894

seq1  CAACTTAGTATTTATCAAAATATTAAGTAGATTGAAGGAAATAAAGATTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTAGTATTTATCAAAATATTAAGTAGATTGAAGGAAATAAAGATTA  944

seq1  ACAAAGCCAATATTAAGGTAATATCATGCCCTAAACATTTTGTTACCTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCCAATATTAAGGTAATATCATGCCCTAAACATTTTGTTACCTTG  994

seq1  AATTC  1004
      |||||
seq2  AATTC  999