BAC Information

Click to search

BAC

Clone NameB6Ng01-159G10
Chromosome17 (Build37)
Map Location 86,955,905 - 87,088,858
singlet/doubletdoublet
Overlap genePrkce
Upstream geneLOC100043902, Six3, LOC100043717, Six2, LOC100043903, Srbd1, LOC545228
Downstream geneEpas1, 1700090G07Rik, Atp6v1e2, Rhoq, Pigf, Cript, EG433144, Socs5, Mcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159G10.bB6Ng01-159G10.g
ACCDH953075DH953076
length1,015529
definitionDH953075|Mus musculus domesticus DNA, BAC clone: B6Ng01-159G10, 5' end.DH953076|Mus musculus domesticus DNA, BAC clone: B6Ng01-159G10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,087,828 - 87,088,858)(86,955,905 - 86,956,439)
sequence
gaattcattttgtcgaccaactggtctcaaactcacagagctctgcctcc
ctccgcctccgcctcggcctccgcctccgcctccgcctccgcctccgcct
ccgcctccgcctccgcctccgcctccgcctccgcctccgcctccgcctcc
gcctccgcctctgcctctgcctcctgagtgctgggattaaagatgtgcac
caccacactctgctagctacatctttctattggctaccgagtaggtcatt
ataaatatcacttgtctccactggctgcatgaataccatcctgttataaa
tactcttagtttgagcaaaatgttcaccatacaaccataaggccatgagt
ctgatcccagaatgaatgtaaaaaaagtaaacaaaacaagctgggtacac
ccctttaaccttagtgctagtatgaggggacataggagggcccctagcca
ggcagtttagcccaatctgcaaactccaggttcagtgagagagatcgttg
ctctccttatacctcccaaaggacaatgattgaaaaagacaattgatgtt
gatttctggtgtccacatgcttaccacctcccattatggacacacacaca
cacacacacacacacacacacacacacacagagagagagagatatcttgt
ccttgccccagtttgagtactcacagatgagttgctcaacctgtcagcgt
gcaaaatttcatgagaaggcaataatgataattagctagttttgtattga
gacatttgggttatttccacggagtccccttgtcgtggacagtatgttgc
atgagcataccattagggtaaaaaaatcgagaagaggggctatacaaaag
gccggcacttgattgccatcatgcgcatgtgccatctaggctagacttca
gtgtttgcctcacccaagggtcatcaccaggtctgagctgcagtatctac
caggcattgtttgtgtggtgtgtttcagtgcaataatagacaatgggcat
tcgtaagttgactct
acagaggcaggaggatgaagcagatcacagtgtctaccctcagaaagaga
gagagatgagtgtgtgtgtgtgtgtgtgtgtgcacgtgtacatatgtgcg
tgtgtgtgtgtgtgcgcacacgcgtatatacgtgcgtgggggtgtgtgtg
gttgggtgcgtgtgtgcatggatagtctgagcactattggtcttgaggat
tcataaatgggaaggaatgcttattagcaatcagcaaggcagcaggaact
tctgaggacaaattgatgccctggggggaatcaggggacaagggaggctt
aaagtgagagacaaacgggagagatgttctaccttgggccccctgtgcat
actactaacgctagcggttagtatgccaaggagactatgccaaggagata
atagtgaagtagatatgctttgtgaatgaagaactatttatggtttgttt
tactctctcttaggaggacgtaatgtcctctaggaagcttctttaggata
ttttttgatgttgagactgtatgtgggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_87087828_87088858
seq2: B6Ng01-159G10.b_50_1064 (reverse)

seq1  AGAGTCAACTTAAAGAAATGCCCATTTGTCTATATATTTGCAACTGAAAA  50
      |||||||||||  |  |||||||| |||||||| || |||| ||||||| 
seq2  AGAGTCAACTT--ACGAATGCCCA-TTGTCTAT-TA-TTGC-ACTGAAAC  44

seq1  ACAACAACAACACAAACAAATGCTGGTAGATACTGGCAGCCTCAGACCTG  100
      ||    || ||||||||||   |||||||||||| |||| ||||||||||
seq2  AC----ACCACACAAACAATGCCTGGTAGATACT-GCAG-CTCAGACCTG  88

seq1  GTGATGACCCCTTGGGTGAGGCAAACACTGAAGTCTAGCCTAGATGGCAC  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGA-CCCTTGGGTGAGGCAAACACTGAAGTCTAGCCTAGATGGCAC  137

seq1  ATGCGCATGATGGCAAATCAAGTGCCGGCCTTTTGTATAAGCCCCTCTTC  200
      |||||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  ATGCGCATGATGGC-AATCAAGTGCCGGCCTTTTGTAT-AGCCCCTCTTC  185

seq1  TCGATTTTTTTACCCTAATGGTATGCTCATGCAAACATACTGTCCACGAC  250
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCGATTTTTTTACCCTAATGGTATGCTCATGC-AACATACTGTCCACGAC  234

seq1  AAGGGGACTCCGTGGAAATAACCCAAATGTCTCAATACAAAACTAGCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGACTCCGTGGAAATAACCCAAATGTCTCAATACAAAACTAGCTAA  284

seq1  TTATCATTATTGCCTTCTCATGAAATTTTGCACGCTGACAGGTTGAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATTATTGCCTTCTCATGAAATTTTGCACGCTGACAGGTTGAGCAA  334

seq1  CTCATCTGTGAGTACTCAAACTGGGGCAAGGACAAGATATCTCTCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTGTGAGTACTCAAACTGGGGCAAGGACAAGATATCTCTCTCTCT  384

seq1  CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCATAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCATAATG  434

seq1  GGAGGTGGTAAGCATGTGGACACCAGAAATCAACATCAATTGTCTTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGGTAAGCATGTGGACACCAGAAATCAACATCAATTGTCTTTTTC  484

seq1  AATCATTGTCCTTTGGGAGGTATAAGGAGAGCAACGATCTCTCTCACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTGTCCTTTGGGAGGTATAAGGAGAGCAACGATCTCTCTCACTGA  534

seq1  ACCTGGAGTTTGCAGATTGGGCTAAACTGCCTGGCTAGGGGCCCTCCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAGTTTGCAGATTGGGCTAAACTGCCTGGCTAGGGGCCCTCCTAT  584

seq1  GTCCCCTCATACTAGCACTAAGGTTAAAGGGGTGTACCCAGCTTGTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTCATACTAGCACTAAGGTTAAAGGGGTGTACCCAGCTTGTTTTG  634

seq1  TTTACTTTTTTTACATTCATTCTGGGATCAGACTCATGGCCTTATGGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTTTTTACATTCATTCTGGGATCAGACTCATGGCCTTATGGTTG  684

seq1  TATGGTGAACATTTTGCTCAAACTAAGAGTATTTATAACAGGATGGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGAACATTTTGCTCAAACTAAGAGTATTTATAACAGGATGGTATT  734

seq1  CATGCAGCCAGTGGAGACAAGTGATATTTATAATGACCTACTCGGTAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGCCAGTGGAGACAAGTGATATTTATAATGACCTACTCGGTAGCC  784

seq1  AATAGAAAGATGTAGCTAGCAGAGTGTGGTGGTGCACATCTTTAATCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAGATGTAGCTAGCAGAGTGTGGTGGTGCACATCTTTAATCCCA  834

seq1  GCACTCAGGAGGCAGAGGCAGAGGCGGAGGCGGAGGCGGAGGCGGAGGCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCAGGAGGCAGAGGCAGAGGCGGAGGCGGAGGCGGAGGCGGAGGCG  884

seq1  GAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGA  934

seq1  GGCGGAGGCGGAGGCCGAGGCGGAGGCGGAGGGAGGCAGAGCTCTGTGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGAGGCGGAGGCCGAGGCGGAGGCGGAGGGAGGCAGAGCTCTGTGAG  984

seq1  TTTGAGACCAGTTGGTCGACAAAATGAATTC  1031
      |||||||||||||||||||||||||||||||
seq2  TTTGAGACCAGTTGGTCGACAAAATGAATTC  1015

seq1: chr17_86955905_86956439
seq2: B6Ng01-159G10.g_70_604

seq1  GAATTCACAGAGGCAGGAGGATGAAGCAGATCACAGTGTCTACCCTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGGCAGGAGGATGAAGCAGATCACAGTGTCTACCCTCAGA  50

seq1  AAGAGAGAGAGATGAGTGTGTGTGTGTGTGTGTGTGTGCACGTGTACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAGAGATGAGTGTGTGTGTGTGTGTGTGTGTGCACGTGTACATA  100

seq1  TGTGCGTGTGTGTGTGTGTGCGCACACGCGTATATACGTGCGTGGGGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGTGTGTGTGTGTGTGCGCACACGCGTATATACGTGCGTGGGGGTG  150

seq1  TGTGTGGTTGGGTGCGTGTGTGCATGGATAGTCTGAGCACTATTGGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTTGGGTGCGTGTGTGCATGGATAGTCTGAGCACTATTGGTCTT  200

seq1  GAGGATTCATAAATGGGAAGGAATGCTTATTAGCAATCAGCAAGGCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTCATAAATGGGAAGGAATGCTTATTAGCAATCAGCAAGGCAGCA  250

seq1  GGAACTTCTGAGGACAAATTGATGCCCTGGGGGGAATCAGGGGACAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTCTGAGGACAAATTGATGCCCTGGGGGGAATCAGGGGACAAGGG  300

seq1  AGGCTTAAAGTGAGAGACAAACGGGAGAGATGTTCTACCTTGGGCCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTAAAGTGAGAGACAAACGGGAGAGATGTTCTACCTTGGGCCCCCT  350

seq1  GTGCATACTACTAACGCTAGCGGTTAGTATGCCAAGGAGACGATGCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTGCATACTACTAACGCTAGCGGTTAGTATGCCAAGGAGACTATGCCAAG  400

seq1  GAGATAATAGTGAAGTAGATATGCTTTGTGAATGAAGAACTATTTATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAATAGTGAAGTAGATATGCTTTGTGAATGAAGAACTATTTATGGT  450

seq1  TTGTTTTACTCTCTCTTAGGAGGACGTAATGTCCTCTAGGAAGCTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTACTCTCTCTTAGGAGGACGTAATGTCCTCTAGGAAGCTTCTTT  500

seq1  AGGATATATTTTGATGTTGAGACTGTATGTGGGAG  535
      ||||||| |||||||||||||||||||||||||||
seq2  AGGATATTTTTTGATGTTGAGACTGTATGTGGGAG  535