BAC Information

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BAC

Clone NameB6Ng01-159I17
Chromosome2 (Build37)17 (Build37)
Map Location 119,439,271 - 119,439,53742,054,501 - 42,055,025
singlet/doubletsingletsinglet
Overlap geneOip5
Upstream geneBub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307
Downstream geneNusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159I17.bB6Ng01-159I17.g
ACCDH953179DH953180
length780832
definitionDH953179|Mus musculus domesticus DNA, BAC clone: B6Ng01-159I17, 5' end.DH953180|Mus musculus domesticus DNA, BAC clone: B6Ng01-159I17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(119,439,271 - 119,439,537)(42,054,501 - 42,055,025)
sequence
gaattcacttaatttgggggggtctcattttttattgtcacaacttatga
accataagcagtgaaatcctcttctttgttgtcttggttagcatgtgagt
aggttttctatatctggaagatgggacttggtggcatttatatacactca
ttttcttataacccacttgttagtctcctatttgtaacagattgaaggct
gagaatatggcaatatttgtgtgtgtgtgtgtgtgtgtgtgtgtagacgt
gtgtgccattgaatgtggatgtcagatgagaatctcaggggttggtcagt
catttgctttccatgttgtttggtacaaggtctctggtttgctgcttgct
tgtgtcagtctagctggcacaagagctcctgggaactgtcctgtctccac
ttttcatctcaccttgggcatggtgggattacacaggatcactacctccc
ccaactttcctggattctggggacagaactcaggtcttcacacctgctca
gggagccttttatctaacatcttagttacttctttttttttttttggctt
ttcgagacagggtttctctgtgtagccctggctgtcctggaactcacttt
gtagaccaggctggccttgaactcagaaatccgcctgcctctgcctccca
agtgctgggattaaaggcgtgtgccaccaccacccagctcttagttactt
ctttattgtcacaacataacaccacaaccaaggcaaattattattatatt
taaaaagaagcatttactttgagactgctg
gaattcctgatctttccaacacttttctcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatgaatgacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgtgcttggattcagttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcatccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgatttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggttatctat
cttgttgattttctcaagaaccaactcctcgtttggttaattctttgata
gtcttctgttccacttgggtgattcacccctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_119439271_119439537
seq2: B6Ng01-159I17.b_572_796 (reverse)

seq1  TTCTTTTTAAATATAATTCTAAATAACAATAACTTCAGGGAAAAAAGAAG  50
      |||||||||||||||||          ||||| ||               
seq2  TTCTTTTTAAATATAAT----------AATAATTT---------------  25

seq1  CCAGGCACCATGGTTTATGCCTTTAATTCATCAAAGTTCTCTAGAGAA-A  99
             || |||||   |  ||          | ||| |   || || |
seq2  ------GCCTTGGTTGTGGTGTT----------ATGTTGT---GACAATA  56

seq1  CAGAATTTGTA--TAATGAAGCTGGGT-GTGGTGGTGCACACCTTTAATC  146
       ||||   |||  |||   |||||||| |||||||  ||| |||||||||
seq2  AAGAA---GTAACTAA--GAGCTGGGTGGTGGTGGCACACGCCTTTAATC  101

seq1  CCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCC  196
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCC  151

seq1  TGGGCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCT  246
      ||| ||||| |||||||||||||||||||||||||| |||||||||||||
seq2  TGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCT  201

seq1  GTCTCGAAAA---AAAAAAAAAAA  267
      ||||||||||   |||||||||||
seq2  GTCTCGAAAAGCCAAAAAAAAAAA  225

seq1: chr17_42054501_42055025
seq2: B6Ng01-159I17.g_71_595 (reverse)

seq1  ATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGT  50

seq1  CTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTA  100

seq1  AAAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACA  150
        |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACA  150

seq1  AAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATT  200

seq1  ACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAG  250
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAG  250

seq1  ACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCG  300

seq1  CTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTA  350
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTAACTGAATCCAAGCACACATTAAAGCAATCATCCATCCTGACCAAGTA  350

seq1  GGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAA  400

seq1  TGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCT  450
      ||| || |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCT  450

seq1  CGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATA  500
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAGA  500

seq1  AAAGTGTTGGAAAGATCAGGAATTC  525
      |||||||||||||||||||||||||
seq2  AAAGTGTTGGAAAGATCAGGAATTC  525