BAC Information

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BAC

Clone NameB6Ng01-159I22
Chromosome17 (Build37)
Map Location 88,555,249 - 88,687,089
singlet/doubletdoublet
Overlap genenone
Upstream geneMcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058
Downstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159I22.bB6Ng01-159I22.g
ACCDH953187DH953188
length1,1191,088
definitionDH953187|Mus musculus domesticus DNA, BAC clone: B6Ng01-159I22, 5' end.DH953188|Mus musculus domesticus DNA, BAC clone: B6Ng01-159I22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,555,249 - 88,556,379)(88,685,980 - 88,687,089)
sequence
attgattgacacagatccacaagtctggaacacactgtccaggtgaggac
actgggaagcacacggttggtggcaggtacttctgggaagagccgagtaa
atgtgacagtaacttcatttgtagaaattagtattatagacttggcctta
tacactgttacaggtaaaaggtcgctgtagtattttgtacaacagcaaag
tataagaaacaacccagatcctggagcgatggctcagcactcggtgtgca
cgctgctccagcacccacacaggtaaatgacaatgacctgtaactccagc
tctaagggccctctctgtcttagggttcctgctgctgcgaggagacacca
tgaccaaagtgacttgggaggaaagggttcatttggcttgcacttcccca
tcaccattcatcaatgaaggaagtcaggacaggaactcaagcagggcagg
aacttggaggcaggaactgatgcagagacccatgaggggtgctgcttact
ggctggttcattctgttttctcatacaacccaagaccaccagtccaggga
tggtaccacccacagtgagctgaggtctcttccaccaatcactaattaag
atgccctacaactggatcttctggaggcgttttctcaactgaggtgctct
cctctcagatgaatttagcttgtgtcacgttgacataaaactgtctagca
caagatccaataccctctcctagtctctgaaggcaccagatatgcctgcc
agtggtgctcagatatgccatcaggtaaaacttccatgtacataaaatat
aatgttatttttttgtctttattttattttttaaagaatgggtggggcat
tgccagttaaatggatgcttatcatggaatagctccataataaagatggt
ggctgctccctggcagagacctagagagatggaggacaagggaagctggg
tgggaaagtttactctcacgtgtagcctttgtactcttgtgatatctcat
tagggtttcattgctatgagagacgccatgacaagcaacttcttaatatt
tattggggctggcttacaggctcggagttcattccacattatgtagggaa
gcatggcagctatagtcag
gaattcagaagaaagacacaaacctgaccaaatcccaggaaaattcctaa
acccaaagactagacaggaaactttggaagctttcagatagatggagttg
tcaaatgaaaagatagtaaggctggggtcatatttctcatttgtgaatag
tagtctcaagactagttaaacaacgctgacagagttgacagataaagcct
ttgatctgagccaagtcatcatcatatttatataaaaagcaaaagacaga
tacacaatggaataggacaaacagaaattatttagaaacatgtgctttcc
aaaaaaaaaaaaaaaaaaaaaaagattggttgagaacttcttcaaatgaa
tcaaaattaaatttggaataaagatctcaaaatagcataagatagaaaac
atgtaggagacagtgtgcaaaccataaataaaacacaattcatagtaaaa
atttaaaaaaaccaagccagtgtggttgcagactgtgcaggaaggttatt
gagccatgctggaaacatagtcatttgatacgggtggaaagataacctgg
atcccaacctttgagaattcttgccttattttatgactctgggtgttttg
cctgcatatgtttgtgtaccacacacatgcttggtgcccagggaagctgg
agaatttgggttccttggagcaagagctacagttgtgagtcacccaatat
gggtgctaggagcgaatctggttccttggtgaccagtatgtgttcttgga
tagatgctgagccatctatccaacctctcaagttttgataccttagaaaa
caaacactgaagtgtgatgagacaaaaatagatgtgtaggagacaaaaaa
atgcaagaaactaacaggcatgtgactcggtagataaatgcttgactacg
tgacaacgctggattgatcctcagagctacataaacccagctgtgaaata
cactgggtcccagcagtgagagtataagcaagagctcagtagtcaaagtc
atcttctatacgtagctagctcaatctaactctgggttaattgcgagtgt
gtctcaaaataaataggaagattcaactataaatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_88555249_88556379
seq2: B6Ng01-159I22.b_50_1168

seq1  ATTGATTGACACAGATCCACAAGTCTGGAACACACTGTCCAGGTGAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTGACACAGATCCACAAGTCTGGAACACACTGTCCAGGTGAGGAC  50

seq1  ACTAGGAAGCACACGGTTGGTGGCAGGTACTTCTGGGAAGAGCCGAGTAA  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAAGCACACGGTTGGTGGCAGGTACTTCTGGGAAGAGCCGAGTAA  100

seq1  ATGTGACAGTAACTTCATTTGTAGAAATTAGTATTATAGACTTGGCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACAGTAACTTCATTTGTAGAAATTAGTATTATAGACTTGGCCTTA  150

seq1  TACACTGTTACAGGTAAAAGGTCGCTGTAGTATTTTGTACAACAGCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGTTACAGGTAAAAGGTCGCTGTAGTATTTTGTACAACAGCAAAG  200

seq1  TATAAGAAACAACCCAGATCCTGGAGCGATGGCTCAGCACTCGGTGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAAACAACCCAGATCCTGGAGCGATGGCTCAGCACTCGGTGTGCA  250

seq1  CGCTGCTCCAGCACCCACACAGGTAAATGACAATGACCTGTAACTCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCTCCAGCACCCACACAGGTAAATGACAATGACCTGTAACTCCAGC  300

seq1  TCTAAGGGCCCTCTCTGTCTTAGGGTTCCTGCTGCTGCGAGGAGACACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGGCCCTCTCTGTCTTAGGGTTCCTGCTGCTGCGAGGAGACACCA  350

seq1  TGACCAAAGTGACTTGGGAGGAAAGGGTTCATTTGGCTTGCACTTCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAAGTGACTTGGGAGGAAAGGGTTCATTTGGCTTGCACTTCCCCA  400

seq1  TCACCATTCATCAATGAAGGAAGTCAGGACAGGAACTCAAGCAGGGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATTCATCAATGAAGGAAGTCAGGACAGGAACTCAAGCAGGGCAGG  450

seq1  AACTTGGAGGCAGGAACTGATGCAGAGACCCATGAGGGGTGCTGCTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGAGGCAGGAACTGATGCAGAGACCCATGAGGGGTGCTGCTTACT  500

seq1  GGCTGGTTCATTCTGTTTTCTCATAGAACCCAAGACCACCAGTCCAGGGA  550
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGCTGGTTCATTCTGTTTTCTCATACAACCCAAGACCACCAGTCCAGGGA  550

seq1  TGGTACCACCCACAGTGAGCTGAGGTCTCTTCCACCAATCACTAATTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCACCCACAGTGAGCTGAGGTCTCTTCCACCAATCACTAATTAAG  600

seq1  ATGCCCTACAACTGGATCTTCTGGAGGCGTTTTCTCAACTGAGGTGCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTACAACTGGATCTTCTGGAGGCGTTTTCTCAACTGAGGTGCTCT  650

seq1  CCTCTCAGATGAATTTAGCTTGTGTCACGTTGACATAAAACTGTCTAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGATGAATTTAGCTTGTGTCACGTTGACATAAAACTGTCTAGCA  700

seq1  CAAGATCCAATACCCTCTCCTAGTCTCTGAAGGCACCAGATATGCCTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCCAATACCCTCTCCTAGTCTCTGAAGGCACCAGATATGCCTGCC  750

seq1  AGTGGTGCTCAGATATGCCATCAGGTAAAACTTCCATGTACATAAAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGCTCAGATATGCCATCAGGTAAAACTTCCATGTACATAAAATAT  800

seq1  AATGTTATTTTTTTGTCTTTATTTTATTTTTTAAAGAATGGGTGGGGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATTTTTTTGTCTTTATTTTATTTTTTAAAGAATGGGTGGGGCAT  850

seq1  TGCCAGTTAAATGGATGCTTATCATGGAATAGCTCCATAATAAAGATGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTTAAATGGATGCTTATCATGGAATAGCTCCATAATAAAGATGGT  900

seq1  GGCTGCTCCCTGGCAGAGACCTAGAGAAGATGGAGGAACAAGGGAAGCTG  950
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  GGCTGCTCCCTGGCAGAGACCTAGAG-AGATGGAGG-ACAAGGGAAGCTG  948

seq1  GGTGGGAAAGTTTACTCTTCACCGTGTAGCCTTTGTACTCTTGTGATATT  1000
      ||||||||||||||||| ||| |||||||||||||||||||||||||| |
seq2  GGTGGGAAAGTTTACTC-TCA-CGTGTAGCCTTTGTACTCTTGTGATA-T  995

seq1  CTCATTAGGGTTTCATTGCTATGAAGAGACGCCATGACCAAGGCAACTCC  1050
      ||||||||||||||||||||||| ||||||||||||||  | |||||| |
seq2  CTCATTAGGGTTTCATTGCTATG-AGAGACGCCATGAC--AAGCAACTTC  1042

seq1  TTAAATATTTAATTGGGGCTGGCTTACAGGCTCGGAGGTTTCATCCACCA  1100
      || ||||||| ||||||||||||||||||||||||||  ||||| |  ||
seq2  TT-AATATTT-ATTGGGGCTGGCTTACAGGCTCGGAG--TTCATTCCACA  1088

seq1  TTATGTAGGG-AGCATGGCAGCCTATAGTCAG  1131
      |||||||||| |||||||||| ||||||||||
seq2  TTATGTAGGGAAGCATGGCAG-CTATAGTCAG  1119

seq1: chr17_88685980_88687089
seq2: B6Ng01-159I22.g_67_1154 (reverse)

seq1  ACACATTTAATAGTTTGATTCTTCCTTTATTTTATTTTTGAGACACACTC  50
      |||||||| |||| |||| ||||||  |||||   |||||||||||||||
seq2  ACACATTT-ATAG-TTGAATCTTCC--TATTT--ATTTTGAGACACACTC  44

seq1  GCATATAACCCAGAG-TAGATGTGAGCTAGCTACGTATTAGAAGATGACT  99
      |||  |||||||||| ||||| ||||||||||||||| ||||||||||||
seq2  GCAATTAACCCAGAGTTAGAT-TGAGCTAGCTACGTA-TAGAAGATGACT  92

seq1  TTGAACTACTGAGCCTCTTGCCTCTACCTCTCAACTGCTGGGACCCAGGT  149
      ||| ||||||||| ||||||| | || ||||| |||||||||||||| ||
seq2  TTG-ACTACTGAG-CTCTTGCTTATA-CTCTC-ACTGCTGGGACCCA-GT  137

seq1  GTATATCACCAAGCTGGGTTTATGTGGCTCTGAGGATCAAATCCAGGCCT  199
      |||| ||||  |||||||||||||| |||||||||||| |||||||  | 
seq2  GTATTTCAC--AGCTGGGTTTATGTAGCTCTGAGGATC-AATCCAG--CG  182

seq1  TTGTCCACGTTAGTCAAGCATTTTATCTACCGAGTCACATGCCCTGTTAG  249
      |||| |||| |||||||||| |||||||||||||||||||| ||||||||
seq2  TTGT-CACG-TAGTCAAGCA-TTTATCTACCGAGTCACATG-CCTGTTAG  228

seq1  TTTCTTGCATTTTTTTTGTCTCCTACACATCTATTTTTGTCTCATCACAC  299
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGCA-TTTTTTTGTCTCCTACACATCTATTTTTGTCTCATCACAC  277

seq1  TTCAGTGTTTGTTTTCTAAGGTATCAAAACTTGAGAGGTTGGATAGATGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGTTTGTTTTCTAAGGTATCAAAACTTGAGAGGTTGGATAGATGG  327

seq1  CTCAGCATCTATCCAAGAACACATACTGGTCACCAAGGAACCAGATTCGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATCTATCCAAGAACACATACTGGTCACCAAGGAACCAGATTCGC  377

seq1  TCCTAGCACCCATATTGGGTGACTCACAACTGTAGCTCTTGCTCCAAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCACCCATATTGGGTGACTCACAACTGTAGCTCTTGCTCCAAGGA  427

seq1  ACCCAAATTCTCCAGCTTCCCTGGGCACCAAGCATGTGTGTGGTACACAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAATTCTCCAGCTTCCCTGGGCACCAAGCATGTGTGTGGTACACAA  477

seq1  ACATATGCAGGCAAAACACCCAGAGTCATAAAATAAGGCAAGAATTCTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGCAGGCAAAACACCCAGAGTCATAAAATAAGGCAAGAATTCTCA  527

seq1  AAGGTTGGGATCCAGGTTATCTTTCCACCCGTATCAAATGACTATGTTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGGGATCCAGGTTATCTTTCCACCCGTATCAAATGACTATGTTTC  577

seq1  CAGCATGGCTCAATAACCTTCCTGCACAGTCTGCAACCACACTGGCTTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGGCTCAATAACCTTCCTGCACAGTCTGCAACCACACTGGCTTGG  627

seq1  TTTTTTTAAATTTTTACTATGAATTGTGTTTTATTTATGGTTTGCACACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAATTTTTACTATGAATTGTGTTTTATTTATGGTTTGCACACT  677

seq1  GTCTCCTACATGTTTTCTATCTTATGCTATTTTGAGATCTTTATTCCAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTACATGTTTTCTATCTTATGCTATTTTGAGATCTTTATTCCAAA  727

seq1  TTTAATTTTGATTCATTTGAAGAAGTTCTCAACCAATCTTTTTTTTTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTGATTCATTTGAAGAAGTTCTCAACCAATCTTTTTTTTTTTT  777

seq1  TTTTTTTTTTTGGAAAGCACATGTTTCTAAATAATTTCTGTTTGTCCTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTGGAAAGCACATGTTTCTAAATAATTTCTGTTTGTCCTAT  827

seq1  TCCATTGTGTATCTGTCTTTTGCTTTTTATATAAATATGATGATGACTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTGTATCTGTCTTTTGCTTTTTATATAAATATGATGATGACTTG  877

seq1  GCTCAGATCAAAGGCTTTATCTGTCAACTCTGTCAGCGTTGTTTAACTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGATCAAAGGCTTTATCTGTCAACTCTGTCAGCGTTGTTTAACTAG  927

seq1  TCTTGAGACTACTATTCACAAATGAGAAATATGACCCCAGCCTTACTATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGACTACTATTCACAAATGAGAAATATGACCCCAGCCTTACTATC  977

seq1  TTTTCATTTGACAACTCCATCTATCTGAAAGCTTCCAAAGTTTCCTGTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTGACAACTCCATCTATCTGAAAGCTTCCAAAGTTTCCTGTCT  1027

seq1  AGTCTTTGGGTTTAGGAATTTTCCTGGGATTTGGTCAGGTTTGTGTCTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTGGGTTTAGGAATTTTCCTGGGATTTGGTCAGGTTTGTGTCTTT  1077

seq1  CTTCTGAATTC  1110
      |||||||||||
seq2  CTTCTGAATTC  1088