BAC Information

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BAC

Clone NameB6Ng01-159K06
Chromosome17 (Build37)
Map Location 15,651,963 - 15,779,976
singlet/doubletdoublet
Overlap geneTbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775
Upstream geneThbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1
Downstream gene5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3, LOC100041383, LOC100041394, LOC213781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159K06.bB6Ng01-159K06.g
ACCDH953247DH953248
length1,1231,096
definitionDH953247|Mus musculus domesticus DNA, BAC clone: B6Ng01-159K06, 5' end.DH953248|Mus musculus domesticus DNA, BAC clone: B6Ng01-159K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,778,852 - 15,779,976)(15,651,963 - 15,653,062)
sequence
gaattcaaggctaaggaaatcaatttttaaaaaagatttatttatttatt
tatttatttatttatttatttattttatgtatgtgagtacactgtagctg
tacagatgtttgtaagccttcatgtggttgttgggaattgaattttaagg
acctctgctcactctggttggccccactcgctccagtcaactctgctcac
tcagtccttgcttgctccagcccaaagatttatttattattatacagaag
tacactgtagctaacttcagacgcaccagaagagggcattggatctcatt
acgggtggttgtgagccaccatgtggttgctgggatttgaactcaggacc
tctgtaagagcagtcagtgctctaaccagctgagccatctcgccagccct
ggaaatcaatattttttaagtgggggaggaagaaccttgaagactgataa
gtagcagaccagaacacaggctggttctcactctcccattaagacttcag
tgaggctgggtgtggtggcgcaggcctttaatcccagcacttgggaggca
gaggcaggaggatttctgagttcgaggccagcctggtctacagagtaagt
tccaggatagccagggctatacagagaaaccctgtcttgaaaaacaaaac
aaaacaaaacaaaacaaaaacaacaacaacaacaacaacaaagacttcag
tgaggcagtcagaaagcttcaggtttgcttttgtttggtgactttttcac
aacacagccatctgcagatttaacaggtaagatgggaggaccaagaggat
agcagaaaccaacagtggaaacggctgggaagctctgctagttctcaggg
gaattctgaagcagctctgggatacctcgatgcaaacagacagagtgaga
catggggaaatctgccatggtttacaaacaaaggtgccagaatgttctat
atactgcaaagtcaattcaatgtgcactcagacactgtccagcaactaga
accacattgagtcatataaaacctgtatgaacttaatattcacaggcccc
attgtggggcaatcggtccctgatctatggcctcattatgaacatcattt
ctctaagagacagttttgttttt
gaattcactcatgttgtcttcctcatatagacctgtcctgagtttatctc
tggatcactcacaagaaaggcagatccttttgtagactgaactaagaaac
ctgaaatcgctgtgttagagtatgttaactaatgtccgttcgaatagatg
gtatgaccagggagtcggttcatggccaagctcatgtctggtttctcact
ctagttaaggcacctgttagaaaagcaggcatctccaggagagttctgtt
caggaaggtgagatgattacagggctgactgccactcttagcttaggagt
gaatggtgagattttgataaggtgctataactagactagctttaactgca
tctaaataaggctcagaccgtgtgtatacaactcttgtttttatcacaga
acctctagagtctgaagatagcattaagtgataggaggacatgtagctag
tagttggtggctatgtccatgactcatggctcctggctggtttcttcctg
tgtgtcctacttgtgacacctggattctttactcaggactttctggcaca
aagcctcttgtattcagaaacacaaagaactggtgatttctaaactgtat
tcccattttctttctagctatgagccagaattatttcctggattaatcta
cagaatgatcaaacccagaattgttctccttatttttgtttctggaaaag
ttgtattaacaggtaagttgaaaggaagtggatgaaactgcaaaggatgt
tggggtggcattttctgtgttagaacagttgtctagccatgtgtaaggat
gctttttaagttttgcacaccattctaaccttcttgagaagggtagaaga
atgagaagaactgcagaggcctgctgctgatgtagccgtcagctagatta
agcttgactgtgggagcaggcagggatgggacactgactgtttcagttgg
ccctgcaccttgggggtagtagagtattgatacagactgagagagctcaa
ttgataccaacagttgggagaataagattcagtccctccattgcttggcc
gaataacatgtcatcccagtccagtatgggaaggaaccatgagtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_15778852_15779976
seq2: B6Ng01-159K06.b_50_1172 (reverse)

seq1  AAAAACAAAACTGT-TCTTAAAGAGAATGATG-TCATAATGAGGCCATAG  48
      |||||||||||||| ||||| ||| ||||||| |||||||||||||||||
seq2  AAAAACAAAACTGTCTCTTAGAGA-AATGATGTTCATAATGAGGCCATAG  49

seq1  ATCAGGGA-CGATTGCCCAAC-ATGTGGCCTGTGAATATTAAGTTCATTA  96
      |||||||| ||||||||| || ||| ||||||||||||||||||||| ||
seq2  ATCAGGGACCGATTGCCCCACAATGGGGCCTGTGAATATTAAGTTCA-TA  98

seq1  CAGGTTTTATATGACTCAATGTGGTTCTAGTTGCTGGACAGTGTCTTGAG  146
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGGTTTTATATGACTCAATGTGGTTCTAGTTGCTGGACAGTGTC-TGAG  147

seq1  TGCACATTTGAATTGACTTTGCAGTATATAGAACATTCTGGCACCTTTTG  196
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  TGCACA-TTGAATTGACTTTGCAGTATATAGAACATTCTGGCACC-TTTG  195

seq1  TTTGTAAACCATGGCAGATTTCCCCATGTCTCACTCTGTCTGTTTTGCAT  246
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTGTAAACCATGGCAGATTTCCCCATGTCTCACTCTGTCTG-TTTGCAT  244

seq1  CGAGGTATCCCAGAGCTGCTTCAGAATTCCCCTGGGAACTAGCAGAGCTT  296
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CGAGGTATCCCAGAGCTGCTTCAGAATTCCCCTGAGAACTAGCAGAGCTT  294

seq1  CCCAGCCGTTTCCACTGTTGGTTTCTGCTATCCTCTTGGTCCTCCCATCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCGTTTCCACTGTTGGTTTCTGCTATCCTCTTGGTCCTCCCATCT  344

seq1  TACCTGTTAAATCTGCAGATGGCTGTGTTGTGAAAAAGTCACCAAACAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTTAAATCTGCAGATGGCTGTGTTGTGAAAAAGTCACCAAACAAA  394

seq1  AGCAAACCTGAAGCTTTCTGACTGCCTCACTGAAGTCTTTGTTGTTGTTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACCTGAAGCTTTCTGACTGCCTCACTGAAGTCTTTGTTGTTGTTG  444

seq1  TTGTTGTTGTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTCAAGACAGGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTCAAGACAGGG  494

seq1  TTTCTCTGTATAGCCCTGGCTATCCTGGAACTTACTCTGTAGACCAGGCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTATAGCCCTGGCTATCCTGGAACTTACTCTGTAGACCAGGCT  544

seq1  GGCCTCGAACTCAGAAATCCTCCTGCCTCTGCCTCCCAAGTGCTGGGATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCGAACTCAGAAATCCTCCTGCCTCTGCCTCCCAAGTGCTGGGATT  594

seq1  AAAGGCCTGCGCCACCACACCCAGCCTCACTGAAGTCTTAATGGGAGAGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCTGCGCCACCACACCCAGCCTCACTGAAGTCTTAATGGGAGAGT  644

seq1  GAGAACCAGCCTGTGTTCTGGTCTGCTACTTATCAGTCTTCAAGGTTCTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCAGCCTGTGTTCTGGTCTGCTACTTATCAGTCTTCAAGGTTCTT  694

seq1  CCTCCCCCACTTAAAAAATATTGATTTCCAGGGCTGGCGAGATGGCTCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCACTTAAAAAATATTGATTTCCAGGGCTGGCGAGATGGCTCAG  744

seq1  CTGGTTAGAGCACTGACTGCTCTTACAGAGGTCCTGAGTTCAAATCCCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTAGAGCACTGACTGCTCTTACAGAGGTCCTGAGTTCAAATCCCAG  794

seq1  CAACCACATGGTGGCTCACAACCACCCGTAATGAGATCCAATGCCCTCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACATGGTGGCTCACAACCACCCGTAATGAGATCCAATGCCCTCTT  844

seq1  CTGGTGCGTCTGAAGTTAGCTACAGTGTACTTCTGTATAATAATAAATAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCGTCTGAAGTTAGCTACAGTGTACTTCTGTATAATAATAAATAA  894

seq1  ATCTTTGGGCTGGAGCAAGCAAGGACTGAGTGAGCAGAGTTGACTGGAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGGGCTGGAGCAAGCAAGGACTGAGTGAGCAGAGTTGACTGGAGC  944

seq1  GAGTGGGGCCAACCAGAGTGAGCAGAGGTCCTTAAAATTCAATTCCCAAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGGCCAACCAGAGTGAGCAGAGGTCCTTAAAATTCAATTCCCAAC  994

seq1  AACCACATGAAGGCTTACAAACATCTGTACAGCTACAGTGTACTCACATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATGAAGGCTTACAAACATCTGTACAGCTACAGTGTACTCACATA  1044

seq1  CATAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATCTTTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATCTTTTT  1094

seq1  TAAAAATTGATTTCCTTAGCCTTGAATTC  1125
      |||||||||||||||||||||||||||||
seq2  TAAAAATTGATTTCCTTAGCCTTGAATTC  1123

seq1: chr17_15651963_15653062
seq2: B6Ng01-159K06.g_66_1161

seq1  GAATTCACTCATGTTGTCTTCCTCATATAGACCTGTCCTGAGTTTATCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCATGTTGTCTTCCTCATATAGACCTGTCCTGAGTTTATCTC  50

seq1  TGGATCACTCACAAGAAAGGCAGATCCTTTTGTAGACTGAACTAAGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCACTCACAAGAAAGGCAGATCCTTTTGTAGACTGAACTAAGAAAC  100

seq1  CTGAAATCGCTGTGTTAGAGTATGTTAACTAATGTCCGTTCGAATAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATCGCTGTGTTAGAGTATGTTAACTAATGTCCGTTCGAATAGATG  150

seq1  GTATGACCAGGGAGTCGGTTCATGGCCAAGCTCATGTCTGGTTTCTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGACCAGGGAGTCGGTTCATGGCCAAGCTCATGTCTGGTTTCTCACT  200

seq1  CTAGTTAAGGCACCTGTTAGAAAAGCAGGCATCTCCAGGAGAGTTCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTAAGGCACCTGTTAGAAAAGCAGGCATCTCCAGGAGAGTTCTGTT  250

seq1  CAGGAAGGTGAGATGATTACAGGGCTGACTGCCACTCTTAGCTTAGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGTGAGATGATTACAGGGCTGACTGCCACTCTTAGCTTAGGAGT  300

seq1  GAATGGTGAGATTTTGATAAGGTGCTATAACTAGACTAGCTTTAACTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTGAGATTTTGATAAGGTGCTATAACTAGACTAGCTTTAACTGCA  350

seq1  TCTAAATAAGGCTCAGACCGTGTGTATACAACTCTTGTTTTTATCACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATAAGGCTCAGACCGTGTGTATACAACTCTTGTTTTTATCACAGA  400

seq1  ACCTCTAGAGTCTGAAGATAGCATTAAGTGATAGGAGGACATGTAGCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTAGAGTCTGAAGATAGCATTAAGTGATAGGAGGACATGTAGCTAG  450

seq1  TAGTTGGTGGCTATGTCCATGACTCATGGCTCCTGGCTGGTTTCTTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGGTGGCTATGTCCATGACTCATGGCTCCTGGCTGGTTTCTTCCTG  500

seq1  TGTGTCCTACTTGTGACACCTGGATTCTTTACTCAGGACTTTCTGGCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTACTTGTGACACCTGGATTCTTTACTCAGGACTTTCTGGCACA  550

seq1  AAGCCTCTTGTATTCAGAAACACAAAGAACTGGTGATTTCTAAACTGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCTTGTATTCAGAAACACAAAGAACTGGTGATTTCTAAACTGTAT  600

seq1  TCCCATTTTCTTTCTAGCTATGAGCCAGAATTATTTCCTGGATTAATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTTTCTTTCTAGCTATGAGCCAGAATTATTTCCTGGATTAATCTA  650

seq1  CAGAATGATCAAACCCAGAATTGTTCTCCTTATTTTTGTTTCTGGAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGATCAAACCCAGAATTGTTCTCCTTATTTTTGTTTCTGGAAAAG  700

seq1  TTGTATTAACAGGTAAGTTGAAAGGAAGTGGATGAAACTGCAAAGGATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTAACAGGTAAGTTGAAAGGAAGTGGATGAAACTGCAAAGGATGT  750

seq1  TGGGGTGGCATTTTCTGTGTTAGAACAGTTGTCTAGCCATGTGTAAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGGCATTTTCTGTGTTAGAACAGTTGTCTAGCCATGTGTAAGGAT  800

seq1  GCTTTTTAAGTTTTGCACACCATTCTAACCTTCTTGAGAAGGGTAGAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTAAGTTTTGCACACCATTCTAACCTTCTTGAGAAGGGTAGAAGA  850

seq1  ATGAGAAGAACTGCAGAGGCCTGCTGCTGATGTAGCCGTCAGCTAGATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAGAACTGCAGAGGCCTGCTGCTGATGTAGCCGTCAGCTAGATTA  900

seq1  AGCTTGACTGTGGGAGCAGGCAGGGATGGGACACTGACTGTTTTCAGTTG  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGCTTGACTGTGGGAGCAGGCAGGGATGGGACACTGACTG-TTTCAGTTG  949

seq1  GCCCTTGCACCTTGGGGGTTAGTAGAGTATGATTACAAGACTGAGAAGAG  1000
      |||| ||||||||||||| |||||||||||   ||| |||||||| ||||
seq2  GCCC-TGCACCTTGGGGG-TAGTAGAGTATTGATAC-AGACTGAG-AGAG  995

seq1  CTCAATTGAATACCAACAGTTGGGAGAATAAGATTTCAGTCC--TCAGTG  1048
      |||||||| |||||||||||||||||||||||| ||||||||   || ||
seq2  CTCAATTG-ATACCAACAGTTGGGAGAATAAGA-TTCAGTCCCTCCATTG  1043

seq1  CTTGTCAG-ATACCATGTCACTCAGGTCCAAGTATGGGAAGGAACTA-GA  1096
      |||| | | ||| |||||||  |  |||| ||||||||||||||| | ||
seq2  CTTGGCCGAATAACATGTCATCCCAGTCC-AGTATGGGAAGGAACCATGA  1092

seq1  GTAG  1100
      ||||
seq2  GTAG  1096