BAC Information

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BAC

Clone NameB6Ng01-160L12
Chromosome17 (Build37)9 (Build37)
Map Location 24,953,897 - 24,953,956113,133,422 - 113,134,261
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSrrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6
Downstream gene4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160L12.bB6Ng01-160L12.g
ACCDH954019DH954020
length127950
definitionDH954019|Mus musculus domesticus DNA, BAC clone: B6Ng01-160L12, 5' end.DH954020|Mus musculus domesticus DNA, BAC clone: B6Ng01-160L12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(24,953,897 - 24,953,956)(113,133,422 - 113,134,261)
sequence
catgaccataggaatgtgaggcacctggtcacgaggcaaccacagtgagg
aaggggagagagagagagagagagagggagagagagagagagagagagag
agagagaacagggagggggaagagaga
gaattctgacagagagtggactcgtcagaggacactgacttaccttgttt
cagttgctgaggttggcagtctccctctgacctgtggagactgacaggga
tgagaatctaagaggagggagaagccacatcttcccagtgaggaagaaac
actgacagagagtaaaatgaccttgttcttctgattagtgcttattttat
tttattaatttattcattttattttgatctcagtttcctatttttatttt
gtattttattactattgataactttgttctttgattgctttattgttgta
ttttgacttgaatcttgatgaaagaaaaatatctgatgattgtgctagtg
aattttaatgtcaatttgacacaagctggagtcatctgggaagactcaac
tgaggaagtgccggtcagatgtgccaagtcttagggcattgtttcgatta
atgatagttgtgagaaggacaggctcactatgggtggttctccactcggg
caggtgaccctagaatgtatgaagtacggtagctgagtgagtcacagaag
caatccagtaagcagtaagtaacccctccatgccttcaggttcccacctc
tagttcctgccctgacctccctcattgatggattgtgaccagagaggctg
tattagttagggttttattgttgtgaagaggcactatgaccacagcaact
ctcacaaaggaaagcatttcattggggctggcttaaggttcagaggctta
gctgtcacagtgagaagcatggaagcatgcaggcagacatggtgctggag
aagtagctgagaataatacatctagatccaaagacagcaagaagagagtg
aaacagtgggcctggcttgagcatctgaaactccagcaccgccccaatga
tgacacacttcctccacaagccacgtacactccaacaagaacatgcctct

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_24953897_24953956
seq2: B6Ng01-160L12.b_106_177 (reverse)

seq1  --TCTCT-----CTC-----TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  38
        |||||     |||     ||||||||||||||||||||||||||||||
seq2  TCTCTCTTCCCCCTCCCTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  50

seq1  CCTCTCTCTCTCTCTCTCTCTC  60
      ||||||||||||||||||||||
seq2  CCTCTCTCTCTCTCTCTCTCTC  72

seq1: chr9_113133422_113134261
seq2: B6Ng01-160L12.g_66_905

seq1  GAATTCTGACAGAGAGTGGACTCGTCAGAGGACACTGACTTACCTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACAGAGAGTGGACTCGTCAGAGGACACTGACTTACCTTGTTT  50

seq1  CAGTTGCTGAGGTTGGCAGTCTCCCTCTGACCTGTGGAGACTGACAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCTGAGGTTGGCAGTCTCCCTCTGACCTGTGGAGACTGACAGGGA  100

seq1  TGAGAATCTAAGAGGAGGGAGAAGCCACATCTTCCCAGTGAGGAAGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATCTAAGAGGAGGGAGAAGCCACATCTTCCCAGTGAGGAAGAAAC  150

seq1  ACTGACAGAGAGTAAAATGACCTTGTTCTTCTGATTAGTGCTTATTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAGAGAGTAAAATGACCTTGTTCTTCTGATTAGTGCTTATTTTAT  200

seq1  TTTATTAATTTATTCATTTTATTTTGATCTCAGTTTCCTATTTTTATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAATTTATTCATTTTATTTTGATCTCAGTTTCCTATTTTTATTTT  250

seq1  GTATTTTATTACTATTGATAACTTTGTTCTTTGATTGCTTTATTGTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTATTACTATTGATAACTTTGTTCTTTGATTGCTTTATTGTTGTA  300

seq1  TTTTGACTTGAATCTTGATGAAAGAAAAATATCTGATGATTGTGCTAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACTTGAATCTTGATGAAAGAAAAATATCTGATGATTGTGCTAGTG  350

seq1  AATTTTAATGTCAATTTGACACAAGCTGGAGTCATCTGGGAAGACTCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAATGTCAATTTGACACAAGCTGGAGTCATCTGGGAAGACTCAAC  400

seq1  TGAGGAAGTGCCGGTCAGATGTGCCAAGTCTTAGGGCATTGTTTCGATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAGTGCCGGTCAGATGTGCCAAGTCTTAGGGCATTGTTTCGATTA  450

seq1  ATGATAGTTGTGAGAAGGACAGGCTCACTATGGGTGGTTCTCCACTCGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGTTGTGAGAAGGACAGGCTCACTATGGGTGGTTCTCCACTCGGG  500

seq1  CAGGTGACCCTAGAATGTATGAAGTACGGTAGCTGAGTGAGTCACAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGACCCTAGAATGTATGAAGTACGGTAGCTGAGTGAGTCACAGAAG  550

seq1  CAATCCAGTAAGCAGTAAGTAACCCCTCCATGCCTTCAGGTTCCCACCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAGTAAGCAGTAAGTAACCCCTCCATGCCTTCAGGTTCCCACCTC  600

seq1  TAGTTCCTGCCCTGACCTCCCTCATTGATGGATTGTGACCAGAGAGGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCTGCCCTGACCTCCCTCATTGATGGATTGTGACCAGAGAGGCTG  650

seq1  TATTAGTTAGGGTTTTATTGTTGTGAAGAGGCACTATGACCACAGCAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTTAGGGTTTTATTGTTGTGAAGAGGCACTATGACCACAGCAACT  700

seq1  CTCACAAAGGAAAGCATTTCATTGGGGCTGGCTTAAGGTTCAGAGGCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAAGGAAAGCATTTCATTGGGGCTGGCTTAAGGTTCAGAGGCTTA  750

seq1  GCTGTCACAGTGAGAAGCATGGAAGCATGCAGGCAGACATGGTGCTGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCACAGTGAGAAGCATGGAAGCATGCAGGCAGACATGGTGCTGGAG  800

seq1  AAGTAGCTGAGAATAATACATCTAGATCCAAAGACAGCAA  840
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCTGAGAATAATACATCTAGATCCAAAGACAGCAA  840