BAC Information

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BAC

Clone NameB6Ng01-160O12
Chromosome3 (Build37)17 (Build37)
Map Location 41,059,159 - 41,059,73718,209,536 - 18,210,585
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160O12.bB6Ng01-160O12.g
ACCDH954160DH954161
length9871,044
definitionDH954160|Mus musculus domesticus DNA, BAC clone: B6Ng01-160O12, 5' end.DH954161|Mus musculus domesticus DNA, BAC clone: B6Ng01-160O12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,159 - 41,059,737)(18,209,536 - 18,210,585)
sequence
gaattcttcgtttagctctgagccccatttttaatggggttatttgtttt
tctggagtccaccttcttgagttctttatatattggacattagtccccta
tctgatttaggataggtaaagattcctttcccaatctgttggtggccttt
tggtcctattgatggtgtcttttgccttacagaagctttgcaattttatg
aggtcccatttgtcaattcttgatcttacagtacaagccattgctgttct
gtttaggcatttttcccctgtgcccatatcttcgaggctttcccacactt
tctcctctataagtttcagtgtctctgtttttatgtggagttccttgatc
cacttagatttgatcttagtacaaggagataggaatggatcaattcacat
tcttctacatgataacagccagttgtgccagcaccatttgttgaaaatgc
tgtctttttcccactggatggttttagctcccttgtcaaatatcaagtgt
ccataggtgtgtgtgttcatttctgggtcttcagttctattccattggtc
tacttgtctgtccgtataccagtaccatgaaatttttgtcactccttata
tgcttatatggtttctttgaatggaattcaattttgctggtttttacggt
cagggcctcacataatgaaacacctctggcattcctattacatctttccc
tagattccattgcattctaccgttttcctagtaaactgaatgacaccaaa
caattgaaagagtatgttacagaagagtcagcacctagttaagtcatact
tactttgactattctgattcaagactacagataaagcaaacaacttgcca
tatattttattaacaaataaattcaatgagaaaagagactaagtaattta
agtttacaaacaatgattctgccaatcatttaggatgtgacagaaactaa
taccattgaaaagaaatttgtctatatcacttcattt
gaattctcatgtaagaaaccattatctgaaatattttgcaaaaattattt
cttctaatctagatttctcatgtttaagttaaaaagtatctgtggatttt
gagtactatcagggccacagtaggtttttgcaatgtaatataatactgta
gttatttataaaaatattacagcattatcagtaaagtcagagaaatactg
tatgtaaagagaacaaaggcatttagatagtaaaatttaaatcacagtaa
tgaatacttttatggaatttatcagaagttgatgggtacttgaattgata
caatactgttctttaaaaaggtaaggcttgaaactcaacatattttccaa
ctgaagccatctccagttgtacatacactggctttgctgaatgtacagac
tgactattaaaatgtaaaatgtaggtatagagagcacaaggagttgtgaa
taaaaactgaggaaaggaaagttgtgtgatggtagtatttaaagaaagat
tgtatcaagtcctactgtatgtgaacataaatatggaaaaataatgtaag
gaactaggtgtactttattaatctagtattatgcatacaagtgtactaat
tactttgtccctgagaaaacaaagtacagtgacttgtatggcagtccctg
tagttagtaatgtctaagaataaaaggaatcaccatagactagactccag
atctcatgataacctatatttttgaccagatgtagaccagtgtgtgaagt
gtccagagggtcattatgcaaatacagagaagaacaactgcttagaaaaa
tctgtgagctttctggcatatgaagaccccttggggatggctctagccag
catagctttgtgcttatctgcactcactattttggttattggcatatttg
tgaacacagagacactcctattgtcaggccaataatcgactttgagtatt
tttgctcatcacactcaccttcttgtttctatgtccttgacttcattggt
cagtcccaacacaggctgctgcatccttcagcagaccacctttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059159_41059737
seq2: B6Ng01-160O12.b_48_625 (reverse)

seq1  CATGGTACTGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATTGAA  50
      |||||||||||||||  |||||||||| ||||||||||||||||| ||||
seq2  CATGGTACTGGTATACGGACAGACAAGTAGACCAATGGAATAGAACTGAA  50

seq1  GACTCAGAAACGAATCCACACACCTATGGTCACTTGATCTTCGACAAGGG  100
      ||| |||||| |||  ||||||||||||| |||||||| || ||||||||
seq2  GACCCAGAAATGAACACACACACCTATGGACACTTGATATTTGACAAGGG  100

seq1  AGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCT  150
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGCTAAAACCATCCAGTGGGAAAAAGACAGCATTTTCAACAAATGGTGCT  150

seq1  GGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACTCCTA  200
      ||||||||||| |||||||||||||||||||| ||||||||||| |||||
seq2  GGCACAACTGGCTGTTATCATGTAGAAGAATGTGAATTGATCCATTCCTA  200

seq1  TCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAA  250
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  TCTCCTTGTACTAAGATCAAATCTAAGTGGATCAAGGAACTCCACATAAA  250

seq1  ACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAG  300
      | |||||||||||||||||||||||||||||||| || ||||||| ||||
seq2  AACAGAGACACTGAAACTTATAGAGGAGAAAGTGTGGGAAAGCCTCGAAG  300

seq1  ATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCT  350
      |||||| |||||||||||||| |||  | |||||||||||||||||| ||
seq2  ATATGGGCACAGGGGAAAAATGCCTAAACAGAACAGCAATGGCTTGTACT  350

seq1  GTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTG  400
      |||||||  ||||| ||||||||||||||||| ||| |||||||||||||
seq2  GTAAGATCAAGAATTGACAAATGGGACCTCATAAAATTGCAAAGCTTCTG  400

seq1  CAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CACCAACAGATTGGG  449
       ||||||||||||||| |||||| ||| |||||| |||||||||||||||
seq2  TAAGGCAAAAGACACCATCAATAGGACCAAAAGGCCACCAACAGATTGGG  450

seq1  AAAGG-ATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATAT  498
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAGGAATCTTTACCTATCCTAAATCAGATAGGGGACTAATGTCCAATAT  500

seq1  ATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTA  548
      |||  ||||||||||||||||||| ||||||||| |||||||||||||| 
seq2  ATA--AAGAACTCAAGAAGGTGGACTCCAGAAAAACAAATAACCCCATT-  547

seq1  AAAAATGGGGCTCAGAGCTAAACAAAGAATT  579
      ||||||||||||||||||||||| |||||||
seq2  AAAAATGGGGCTCAGAGCTAAACGAAGAATT  578

seq1: chr17_18209536_18210585
seq2: B6Ng01-160O12.g_68_1111

seq1  GAATTCTCATGTAAGAAACCATTATCTGAAATATTTTGCAAAAATTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGTAAGAAACCATTATCTGAAATATTTTGCAAAAATTATTT  50

seq1  CTTCTAATCTAGATTTCTCATGTTTAAGTTAAAAAGTATCTGTGGATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAATCTAGATTTCTCATGTTTAAGTTAAAAAGTATCTGTGGATTTT  100

seq1  GAGTACTATCAGGGCCACAGTAGGTTTTTGCAATGTAATATAATACTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTATCAGGGCCACAGTAGGTTTTTGCAATGTAATATAATACTGTA  150

seq1  GTTATTTATAAAAATATTACAGCATTATCAGTAAAGTCAGAGAAATACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTATAAAAATATTACAGCATTATCAGTAAAGTCAGAGAAATACTG  200

seq1  TATGTAAAGAGAACAAAGGCATTTAGATAGTAAAATTTAAATCACAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAAGAGAACAAAGGCATTTAGATAGTAAAATTTAAATCACAGTAA  250

seq1  TGAATACTTTTATGGAATTTATCAGAAGTTGATGGGTACTTGAATTGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACTTTTATGGAATTTATCAGAAGTTGATGGGTACTTGAATTGATA  300

seq1  CAATACTGTTCTTTAAAAAGGTAAGGCTTGAAACTCAACATATTTTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTGTTCTTTAAAAAGGTAAGGCTTGAAACTCAACATATTTTCCAA  350

seq1  CTGAAGCCATCTCCAGTTGTACATACACTGGCTTTGCTGAATGTACAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCCATCTCCAGTTGTACATACACTGGCTTTGCTGAATGTACAGAC  400

seq1  TGACTATTAAAATGTAAAATGTAGGTATAGAGAGCACAAGGAGTTGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATTAAAATGTAAAATGTAGGTATAGAGAGCACAAGGAGTTGTGAA  450

seq1  TAAAAACTGAGGAAAGGAAAGTTGTGTGATGGTAGTATTTAAAGAAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACTGAGGAAAGGAAAGTTGTGTGATGGTAGTATTTAAAGAAAGAT  500

seq1  TGTATCAAGTCCTACTGTATGTGAACATAAATATGGAAAAATAATGTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCAAGTCCTACTGTATGTGAACATAAATATGGAAAAATAATGTAAG  550

seq1  GAACTAGGTGTACTTTATTAATCTAGTATTATGCATACAAGTGTACTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGGTGTACTTTATTAATCTAGTATTATGCATACAAGTGTACTAAT  600

seq1  TACTTTGTCCCTGAGAAAACAAAGTACAGTGACTTGTATGGCAGTCCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTCCCTGAGAAAACAAAGTACAGTGACTTGTATGGCAGTCCCTG  650

seq1  TAGTTAGTAATGTCTAAGAATAAAAGGAATCACCATAGACTAGACTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGTAATGTCTAAGAATAAAAGGAATCACCATAGACTAGACTCCAG  700

seq1  ATCTCATGATAACCTATATTTTTGACCAGATGTAGACCAGTGTGTGAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATGATAACCTATATTTTTGACCAGATGTAGACCAGTGTGTGAAGT  750

seq1  GTCCAGAGGGTCATTATGCAAATACAGAGAAGAACAACTGCTTAGAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAGGGTCATTATGCAAATACAGAGAAGAACAACTGCTTAGAAAAA  800

seq1  TCTGTGAGCTTTCTGGCATATGAAGACCCCTTGGGGATGGCTCTAGCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAGCTTTCTGGCATATGAAGACCCCTTGGGGATGGCTCTAGCCAG  850

seq1  CATAGCTTTGTGCTTATCTGCACTCACTATTTTTGTTATTGGCATATTTG  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CATAGCTTTGTGCTTATCTGCACTCACTATTTTGGTTATTGGCATATTTG  900

seq1  TGAAACACAGAGACACTCCTATTGTCAAGGCCAATAATCGAACTTTGAGT  950
      || ||||||||||||||||||||||| ||||||||||||| |||||||| 
seq2  TG-AACACAGAGACACTCCTATTGTC-AGGCCAATAATCG-ACTTTGAG-  946

seq1  TATATTTTGCTCATCACACTCACCTTCTGTTTCCTATGTTCCTTGAACTT  1000
      ||| ||||||||||||||||||||||||  || ||||| |||||| ||||
seq2  TAT-TTTTGCTCATCACACTCACCTTCTTGTTTCTATG-TCCTTG-ACTT  993

seq1  CATTGGTCAG-CCCAACACA-GCTGCCTGCATCCTTCAGCAGACCACCTT  1048
      |||||||||| ||||||||| |||| ||||||||||||||||||||||||
seq2  CATTGGTCAGTCCCAACACAGGCTG-CTGCATCCTTCAGCAGACCACCTT  1042

seq1  TG  1050
      ||
seq2  TG  1044