BAC Information

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BAC

Clone NameB6Ng01-161B18
Chromosome17 (Build37)
Map Location 40,969,346 - 41,143,132
singlet/doubletdoublet
Overlap geneRhag, 9130008F23Rik, EG435528, Cenpq, Mut
Upstream geneLOC672857, LOC627695, LOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2
Downstream geneLdha-ps3, LOC627577
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161B18.bB6Ng01-161B18.g
ACCDH954313DH954314
length1,109863
definitionDH954313|Mus musculus domesticus DNA, BAC clone: B6Ng01-161B18, 5' end.DH954314|Mus musculus domesticus DNA, BAC clone: B6Ng01-161B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,142,025 - 41,143,132)(40,969,346 - 40,970,208)
sequence
gaattctgtgccttgttggccaaaacttctgtccatcattccaatggcaa
tactgtagaattgggcacagcatgagtaaatagtacagagtatgcatcct
gggtatcactgaccaaggtgattctgatgttattagacatgccaggatag
actgataaaaattataccgggaaagattttatttatttttacttttatta
ttattattattattattattattattattattattattattatagagcca
gagctctttaaaaagaaaaatgaagtcagagaggtgatgctccaaattca
gctgctggtggaatattcatcattgtctctccagtctccacagaaacatg
ctcttgtcatacttcccttctatttagatagatagatagatagatagata
gatagatagatagatagatagatagatagataaaacttaagcaaacaaaa
aaagttgtcttgtttaaaagcaagacctcttccttcacaggctgatcctt
ttccagtaaaagatgatcatgtactcccgatcatcctgattctatcattc
aagtgctaagataacaaccctgtgctaacataccaggtagcagtatatgt
ggtaattgggatgctacccagagcatgctaagccagtattccatcaactg
agctccagatcctaccctgggatgttttgctagtgtctgatatatgtgac
ttttaggaatcagcattaaccaagattcaaaacatcttttccagactctt
atatggttggtccaggtatgatcctccctaccgttgactggcaatagcca
ggtaggtctgacacactacaaaggggctgctgggcccctcctccctctct
tgcctcttacttctcttttgctctcttgtgcttgtcccttcttcactccc
ttccctatttccttcatcctcttccatgtgtcatggaaagcctctacttc
tctactcttcatcttctctgcctttctctactctattaccttctaactcc
ccttccaaggccttgaataaactctattttaaacctaatacttccggatg
gcctggtcccctattggggaagggggggccttggcatgggtccaccggag
gtcctcctc
gaattcactttgtagaccaagctggcctcaaactcagaaatctgcctgcc
tctgcctctgcctcctaagtgttgggattaaaggtgtgtgccaccaccac
ctggcaccaaataagagttttaataagtctgaagtaatgataattttatt
tttctatgtttatgcaagatttcaatgctggaggaatgtagacctatagg
aattctctgaagtaatttttacaacttctgtgtgcccaaaaagtaacgtg
acatctctttcttaaagttcaactccttgcctcaagcttcttgcctgtga
gttagagaaattgttattcaggacaaaacctcagatcaagcactcttctt
ttccaacctagggtaggaaatgactgatgcgttgtagatatattttaaga
ttttttttatgtttatggatttttgtctgcaagcatatcagtggaccaca
tgcatacaatgcccatgggtgggggggcagaaaaggacatggatcccctg
tcattggaatcacagagcagttgttagccactgtgtgggctctggggacc
tgaaccaggatcctctggtaaagcagaaaatgtccataaatattgaacat
ctctgaaactcctatatggcatacataaagcaaggttaagaacatatatt
tcaactgcttacaatttgtgtcataagagacaactttcagtacatttttt
aaaatcatactgaacaggtactctttttaaaatgataaatacccaactct
ttgggtataccagccagctgagaattctcatgagctgaaattggttctct
ctccatctcagatattccaggccataatgtgtttcaaggaaagaaaagtg
tgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_41142025_41143132
seq2: B6Ng01-161B18.b_46_1154 (reverse)

seq1  GAGGAGGTGCCTCAGTGGACCCATGCCAAGG-CACCCCTTCCCC-ATGAG  48
      |||||||  |  | ||||||||||||||||| | |||||||||| ||  |
seq2  GAGGAGGACCTCCGGTGGACCCATGCCAAGGCCCCCCCTTCCCCAATAGG  50

seq1  GGACCA-GCCACACGAAGGTAT--AGTATAGAATAGAGTTTATTCAGGGC  95
      |||||| ||||  || | ||||   || || ||||||||||||||| |||
seq2  GGACCAGGCCATCCGGAAGTATTAGGTTTAAAATAGAGTTTATTCAAGGC  100

seq1  ATGGGGAGGGGAGTTAAGAGGGTAATAGAGGTAGAGAAAGGCAGAGAAAG  145
       | || ||||||||| ||| ||||||||| |||||||||||||||| |||
seq2  CTTGGAAGGGGAGTT-AGAAGGTAATAGA-GTAGAGAAAGGCAGAG-AAG  147

seq1  ATGGAGAGTAGAGAAGTAGAGGCTTTCCATGAACACATGGAAAGAGGATG  195
      ||| ||||||||||||||||||||||||||| |||||||| |||||||||
seq2  ATGAAGAGTAGAGAAGTAGAGGCTTTCCATG-ACACATGG-AAGAGGATG  195

seq1  AAGGAAATAGGGAAGGGAGTGAGGAAGGGACAAGCACAAGAGAGCAAAAG  245
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGGAAATAGGGAAGGGAGTGAAGAAGGGACAAGCACAAGAGAGCAAAAG  245

seq1  AGAAGTAAGAGGCAAGAGAGGGAGGAGGGGCCAAGCAGCCCCTTTTGTAG  295
      |||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  AGAAGTAAGAGGCAAGAGAGGGAGGAGGGGCCCAGCAGCCCC-TTTGTAG  294

seq1  TGTGTCAGACCTACCTGGCTATTGCCAGTCAACGGTAGGGAGGATCATAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAGACCTACCTGGCTATTGCCAGTCAACGGTAGGGAGGATCATAC  344

seq1  CTGGACCAACCATATAAGAGTCTGGAAAAGATGTTTTGAATCTTGGTTAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCAACCATATAAGAGTCTGGAAAAGATGTTTTGAATCTTGGTTAA  394

seq1  TGCTGATTCCT-AAAGTCACATATATCAGACACTAGC-AAACATCCCAGG  443
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  TGCTGATTCCTAAAAGTCACATATATCAGACACTAGCAAAACATCCCAGG  444

seq1  GTAGGATCTGGAGCTCAGTTGATGGAATACTGGCTTAGCATGCTCTGGGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATCTGGAGCTCAGTTGATGGAATACTGGCTTAGCATGCTCTGGGT  494

seq1  AGCATCCCAATTACCACATATACTGCTACCTGGTATGTTAGCACAGGGTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCCAATTACCACATATACTGCTACCTGGTATGTTAGCACAGGGTT  544

seq1  GTTATCTTAGCACTTGAATGATAGAATCAGGATGATCGGGAGTACATGAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTTAGCACTTGAATGATAGAATCAGGATGATCGGGAGTACATGAT  594

seq1  CATCTTTTACTGGAAAAGGATCAGCCTGTGAAGGAAGAGGTCTTGCTTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTACTGGAAAAGGATCAGCCTGTGAAGGAAGAGGTCTTGCTTTT  644

seq1  AAACAAGACAACTTTTTTTGTTTGCTTAAGTTTTATCTATCTATCTATCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGACAACTTTTTTTGTTTGCTTAAGTTTTATCTATCTATCTATCT  694

seq1  ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAAATAGAAGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAAATAGAAGG  744

seq1  GAAGTATGACAAGAGCATGTTTCTGTGGAGACTGGAGAGACAATGATGAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATGACAAGAGCATGTTTCTGTGGAGACTGGAGAGACAATGATGAA  794

seq1  TATTCCACCAGCAGCTGAATTTGGAGCATCACCTCTCTGACTTCATTTTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCACCAGCAGCTGAATTTGGAGCATCACCTCTCTGACTTCATTTTT  844

seq1  CTTTTTAAAGAGCTCTGGCTCTATAATAATAATAATAATAATAATAATAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAAGAGCTCTGGCTCTATAATAATAATAATAATAATAATAATAA  894

seq1  TAATAATAATAATAATAATAAAAGTAAAAATAAATAAAATCTTTCCCGGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAATAATAATAATAAAAGTAAAAATAAATAAAATCTTTCCCGGT  944

seq1  ATAATTTTTATCAGTCTATCCTGGCATGTCTAATAACATCAGAATCACCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTTATCAGTCTATCCTGGCATGTCTAATAACATCAGAATCACCT  994

seq1  TGGTCAGTGATACCCAGGATGCATACTCTGTACTATTTACTCATGCTGTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGTGATACCCAGGATGCATACTCTGTACTATTTACTCATGCTGTG  1044

seq1  CCCAATTCTACAGTATTGCCATTGGAATGATGGACAGAAGTTTTGGCCAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTCTACAGTATTGCCATTGGAATGATGGACAGAAGTTTTGGCCAA  1094

seq1  CAAGGCACAGAATTC  1108
      |||||||||||||||
seq2  CAAGGCACAGAATTC  1109

seq1: chr17_40969346_40970208
seq2: B6Ng01-161B18.g_67_929

seq1  GAATTCACTTTGTAGACCAAGCTGGCCTCAAACTCAGAAATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAAGCTGGCCTCAAACTCAGAAATCTGCCTGCC  50

seq1  TCTGCCTCTGCCTCCTAAGTGTTGGGATTAAAGGTGTGTGCCACCACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTGCCTCCTAAGTGTTGGGATTAAAGGTGTGTGCCACCACCAC  100

seq1  CTGGCACCAAATAAGAGTTTTAATAAGTCTGAAGTAATGATAATTTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACCAAATAAGAGTTTTAATAAGTCTGAAGTAATGATAATTTTATT  150

seq1  TTTCTATGTTTATGCAAGATTTCAATGCTGGAGGAATGTAGACCTATAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGTTTATGCAAGATTTCAATGCTGGAGGAATGTAGACCTATAGG  200

seq1  AATTCTCTGAAGTAATTTTTACAACTTCTGTGTGCCCAAAAAGTAACGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCTGAAGTAATTTTTACAACTTCTGTGTGCCCAAAAAGTAACGTG  250

seq1  ACATCTCTTTCTTAAAGTTCAACTCCTTGCCTCAAGCTTCTTGCCTGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTTTCTTAAAGTTCAACTCCTTGCCTCAAGCTTCTTGCCTGTGA  300

seq1  GTTAGAGAAATTGTTATTCAGGACAAAACCTCAGATCAAGCACTCTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGAAATTGTTATTCAGGACAAAACCTCAGATCAAGCACTCTTCTT  350

seq1  TTCCAACCTAGGGTAGGAAATGACTGATGCGTTGTAGATATATTTTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACCTAGGGTAGGAAATGACTGATGCGTTGTAGATATATTTTAAGA  400

seq1  TTTTTTTTATGTTTATGGATTTTTGTCTGCAAGCATATCAGTGGACCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTATGTTTATGGATTTTTGTCTGCAAGCATATCAGTGGACCACA  450

seq1  TGCATACAATGCCCATGGGTGGGGGGGCAGAAAAGGACATGGATCCCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACAATGCCCATGGGTGGGGGGGCAGAAAAGGACATGGATCCCCTG  500

seq1  TCATTGGAATCACAGAGCAGTTGTTAGCCACTGTGTGGGCTCT-GGGACC  549
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCATTGGAATCACAGAGCAGTTGTTAGCCACTGTGTGGGCTCTGGGGACC  550

seq1  TGAACCAGGATCCTCTGGTAAAGCAGAAAATGTCCATAAATATTGAACAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAGGATCCTCTGGTAAAGCAGAAAATGTCCATAAATATTGAACAT  600

seq1  CTCTGAAACTCCTATATGGCATACATAAAGCAAGGTTAAGAACATATATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAACTCCTATATGGCATACATAAAGCAAGGTTAAGAACATATATT  650

seq1  TCAACTGCTTACAATTTGTGTCATAAGAGACAACTTTCAGTACATTTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGCTTACAATTTGTGTCATAAGAGACAACTTTCAGTACATTTTTT  700

seq1  AAAATCATACTGAACAGGTACTCTTTTTAAAATGATAAATACCCAACTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATACTGAACAGGTACTCTTTTTAAAATGATAAATACCCAACTCT  750

seq1  TTGGGTATACCAGCCAGCTGAGAATTCTCATGAGCTGAAATTGGTTCTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTATACCAGCCAGCTGAGAATTCTCATGAGCTGAAATTGGTTCTCT  800

seq1  CTCCAATCTCAGATATTCCAGGCCATAATGTGTTTCAAGGAAAGAAAAGT  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCC-ATCTCAGATATTCCAGGCCATAATGTGTTTCAAGGAAAGAAAAGT  849

seq1  GTGTGTGTGTGTGT  863
      ||||||||||||||
seq2  GTGTGTGTGTGTGT  863