BAC Information

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BAC

Clone NameB6Ng01-162F08
ChromosomeX (Build37)17 (Build37)
Map Location 17,403,291 - 17,403,39820,316,830 - 20,317,931
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNdph, LOC100043063, Efhc2, Fundc1, EG278181, EG668994
Downstream geneEG436196, EG331391, Dusp21, LOC100043951, Utx, LOC100043952, 4930578C19Rik, LOC100043098
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162F08.bB6Ng01-162F08.g
ACCDH955197DH955198
length1,0051,113
definitionDH955197|Mus musculus domesticus DNA, BAC clone: B6Ng01-162F08, 5' end.DH955198|Mus musculus domesticus DNA, BAC clone: B6Ng01-162F08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,403,291 - 17,403,398)(20,316,830 - 20,317,931)
sequence
gaattcagtctgtatccagaacagaaactaattattttgtgccatcttcg
attggcttttgggcctgtaactcaggacttacccctgtgtatcaactaag
gtttttgaatcttcccatgatttctgtgttatgatccaactgttacctca
agtgtattatcattctgcatctattctagaagaaatatacgctggtacaa
gatttaaaagagaacctgttactttaaccttagccaccttttttgggcat
tgggatggcagtaggagtgggaatgggagtatcgaccttaattgaaggaa
gacaagggatccaatccttaagagatgctgttaacaaagatctagagatg
ttagaaaagtcaattgatgctttgaaaaaatctttatcctcactatcaga
agtagtgttacagaataggagaggtcttgatctgctcttcctaaaggaag
aaggactgtgtgcagccctaaaagaagaatgctgtttttatgcagatcac
actgggttagttagggattcaatgcaaaagctgagagaaaaactcaaacg
aagaaagcaagaatgagaggcccaacagggatggttagagtcgtggtatt
cttggtcaccgtggacaacatctttattttctgccctagctggaccagtt
attttcatatgtctaattctgatctttggtccttgcataattaatagggg
aatggcttttatccagagtaggatagacacagtcaaactcctggttatac
aatgacaatatcaacccataattcagatagaagaagaattaggagacacg
ggttttttaattctaggattgatgttcggggcagttctaccgaggtaatc
ttagagccgcagaattctatgttttgccatggtcagtagaagaagagggg
aatgaaggaagatgaaatattgtacttgtgagttgttaggagccgccccg
ggcctggggctgagacaagcagagcatgcgcaggcatgccagggcagggc
tgtca
gaattctatggagattttaggggaaagagggacatcaaccacactattct
gaagagagaaataggacacccatgatcaaaatattggcaatgtatgacaa
tgtgtgctgtagtgccatgaacactttataagttataatatactcgctag
ttaattaggaagagaatttgatgggaaggaatctatgtatgttactatga
gctcacttagtgtatatgggtgttcatgattaaataggcacacccatgga
acttactacttttgttcatgtaaaacaagtagcaagaagctaccctctaa
atatctatgcaaataaaaatgacactgtcacacttatttattgatggccc
tctttgtagtgaacagcactactcagagattgacatcagctcctagaatt
gagaataagtgtatgttgatggctcagtttgaaataaggtattaatacta
cttcttttttgtctgagatattgtataataatgaatgaaagaatgctaaa
cactaggagatagtttataacattcccaagtcttgaatgggaaactggta
aaaagagaggcacaattgatccagctgcctgagaattggaattatgaact
cagttgatggaaacccactgctaagcaattgggatttaagcaagatggta
tagtgaaagccctctgaggatgaaatattggaactataccttgtaactct
gggtttttatattttctgtaaatttcacataaacctagaaacagccagag
aaaaatccctactaagtaattatctcaatcagattgtccttttaaaattt
gggtaagggcaattttgtgctatttgattaattataacacaacccacaat
ggattataatatttctcagcattgggcctaggctgtataagaaattgtat
caagaaagacagaggatccaaaccaagaaaaatctctgtgctcatgatta
ctgcttccagattctgtcttcagatcttgccttgattcctcaatgatgga
tatatcctgtgtgatagtatgaattgaaagtatcgcttctagtgtcttat
gtctgatgttattaccagagtgtgagattgtttgccaggatgaaaactat
agaaaattgaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_17403291_17403398
seq2: B6Ng01-162F08.b_949_1049

seq1  TGAAGGAAGATGAAATAATGTAACTTGTGAGTTGTCTAGGAGCCCGAGGC  50
      ||||||||||||||||| ||| ||||||||||||| ||||||||   | |
seq2  TGAAGGAAGATGAAATATTGT-ACTTGTGAGTTGT-TAGGAGCC---GCC  45

seq1  CCCGACCTGGGGCTGAGAACAAAGCAGAACAGGCCCAGGTATGCCAGGGC  100
      || | |||||||||||||   ||||||| || || |||| ||||||||||
seq2  CCGGGCCTGGGGCTGAGA--CAAGCAGAGCATGCGCAGGCATGCCAGGGC  93

seq1  AGGGCTGT  108
      ||||||||
seq2  AGGGCTGT  101

seq1: chr17_20316830_20317931
seq2: B6Ng01-162F08.g_84_1179 (reverse)

seq1  GCCTC-ATATTCTAATAGTTTTCATCCTTGCAAACAATCTCAC-CTCTGG  48
      ||||| || |||| |||||||||||||| |||||||||||||| ||||||
seq2  GCCTCAATTTTCT-ATAGTTTTCATCCTGGCAAACAATCTCACACTCTGG  49

seq1  TAAATAAACACTCAGACATAAGACACTAGAAGCGATACTTTC-ATTCATA  97
      |||   |||| ||||||||||||||||||||||||||||||| |||||||
seq2  TAA--TAACA-TCAGACATAAGACACTAGAAGCGATACTTTCAATTCATA  96

seq1  CTATCACACAGGATATATTCCATCATTTGAGGAAATCAAGGCAAGATCTG  147
      ||||||||||||||||| ||||||| |||||| |||||||||||||||||
seq2  CTATCACACAGGATATA-TCCATCA-TTGAGG-AATCAAGGCAAGATCTG  143

seq1  AAGACAGAATCTGGAAGCAGTAATCATGAGCACAGAAGATTTTTCTTGGT  197
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAGACAGAATCTGGAAGCAGTAATCATGAGCACAG-AGATTTTTCTTGGT  192

seq1  TTGGATCCTCTGTCTTTCTTGATACAATTTCTTATACAGCCTAGGCCCAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCCTCTGTCTTTCTTGATACAATTTCTTATACAGCCTAGGCCCAA  242

seq1  TGCTGAGAAATATTATAATCCATTGTGGGTTGTGTTATAATTAATCAAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGAAATATTATAATCCATTGTGGGTTGTGTTATAATTAATCAAAT  292

seq1  AGCAACAAAATTGCCCTTACCCAAATTTTAAAAGGACAATCTGATTGAGA  347
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGC-ACAAAATTGCCCTTACCCAAATTTTAAAAGGACAATCTGATTGAGA  341

seq1  TAATTACTTAGTAGGGATTTTTCTCTGGCTGTTTCTAGGTTTATGTGAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACTTAGTAGGGATTTTTCTCTGGCTGTTTCTAGGTTTATGTGAAA  391

seq1  TTTACAGAAAATATAAAAACCCAGAGTTACAAGGTATAGTTCCAATATTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGAAAATATAAAAACCCAGAGTTACAAGGTATAGTTCCAATATTT  441

seq1  CATCCTCAGAGGGCTTTCACTATACCATCTTGCTTAAATCCCAATTGCTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCAGAGGGCTTTCACTATACCATCTTGCTTAAATCCCAATTGCTT  491

seq1  AGCAGTGGGTTTCCATCAACTGAGTTCATAATTCCAATTCTCAGGCAGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGGGTTTCCATCAACTGAGTTCATAATTCCAATTCTCAGGCAGCT  541

seq1  GGATCAATTGTGCCTCTCTTTTTACCAGTTTCCCATTCAAGACTTGGGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAATTGTGCCTCTCTTTTTACCAGTTTCCCATTCAAGACTTGGGAA  591

seq1  TGTTATAAACTATCTCCTAGTGTTTAGCATTCTTTCATTCATTATTATAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAAACTATCTCCTAGTGTTTAGCATTCTTTCATTCATTATTATAC  641

seq1  AATATCTCAGACAAAAAAGAAGTAGTATTAATACCTTATTTCAAACTGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTCAGACAAAAAAGAAGTAGTATTAATACCTTATTTCAAACTGAG  691

seq1  CCATCAACATACACTTATTCTCAATTCTAGGAGCTGATGTCAATCTCTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAACATACACTTATTCTCAATTCTAGGAGCTGATGTCAATCTCTGA  741

seq1  GTAGTGCTGTTCACTACAAAGAGGGCCATCAATAAATAAGTGTGACAGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGCTGTTCACTACAAAGAGGGCCATCAATAAATAAGTGTGACAGTG  791

seq1  TCATTTTTATTTGCATAGATATTTAGAGGGTAGCTTCTTGCTACTTGTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTATTTGCATAGATATTTAGAGGGTAGCTTCTTGCTACTTGTTT  841

seq1  TACATGAACAAAAGTAGTAAGTTCCATGGGTGTGCCTATTTAATCATGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAACAAAAGTAGTAAGTTCCATGGGTGTGCCTATTTAATCATGAA  891

seq1  CACCCATATACACTAAGTGAGCTCATAGTAACATACATAGATTCCTTCCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATATACACTAAGTGAGCTCATAGTAACATACATAGATTCCTTCCC  941

seq1  ATCAAATTCTCTTCCTAATTAACTAGCGAGTATATTATAACTTATAAAGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTCTCTTCCTAATTAACTAGCGAGTATATTATAACTTATAAAGT  991

seq1  GTTCATGGCACTACAGCACACATTGTCATACATTGCCAATATTTTGATCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGGCACTACAGCACACATTGTCATACATTGCCAATATTTTGATCA  1041

seq1  TGGGTGTCCTATTTCTCTCTTCAGAATAGTGTGGTTGATGTCCCTCTTTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTCCTATTTCTCTCTTCAGAATAGTGTGGTTGATGTCCCTCTTTC  1091

seq1  CCCTA  1102
      |||||
seq2  CCCTA  1096