BAC Information

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BAC

Clone NameB6Ng01-163H21
Chromosome17 (Build37)
Map Location 85,924,018 - 86,104,818
singlet/doubletdoublet
Overlap geneLOC383282, LOC100043902, Six3, LOC100043717, Six2
Upstream genePlekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901, 1700106N22Rik, EG668850
Downstream geneLOC100043903, Srbd1, LOC545228, Prkce
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163H21.bB6Ng01-163H21.g
ACCDH956064DH956065
length1,174309
definitionDH956064|Mus musculus domesticus DNA, BAC clone: B6Ng01-163H21, 5' end.DH956065|Mus musculus domesticus DNA, BAC clone: B6Ng01-163H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,103,643 - 86,104,818)(85,924,018 - 85,924,326)
sequence
gaattcaacacagaacccaagtgagaaagagagagagacagagacagaga
gacagacagagacagagagacagagagagacagagacacagagagactca
aggccactctcagaatcaagcatgacaagtagaaaaaaaaaatcaatggc
caaatgttacatttcctgaagcaacaaaattcaggtgactcagtgggtgt
gttcaacaggtcctctacttctcttcctgcccgcaagtttaaatgtgtgc
atgtgtgtgtgtgcactggtacatgtgtgtgcacataaggggctgcgagt
gtccttctgcatgtctgactctgctccagagaagagtgccaaatgagtag
tttatactggaagcagcctggaatatctgactacttatgtagctatgtgt
tgtatggcctcttaatttagccctcattccagatgcatgacacgtccttt
tgacacctcgaagaaatgtttctcagatggcaggctgggcaccacagctc
caggctgccaaaggaaaacacatggctctaaaaattaaaagtgatttaga
tcctcctaggaaatgcctcgcttcaggctacttgatgtggccatttatta
agtggcttaatcaggaaaaggaactccgtctcagagcaattaaacccctt
tctgggcacccctgggtcccctgacgatggatggagaatgtgttcatggt
gtattctctccagaacagaactgatccaagttgggtaagggtcgggggct
tagccacggagactgttgcctagaaacacacctaaatcactgggtctggg
gaacttgcctttgatggaagccaagttgtcttttagtgtggtttcatttg
cccttcagtgggaaggttagagtcacagtctggcaaatctgaagctctgc
gctgtgctggcccaagcctgtcttccctctgccaggaacaagagaatgtc
agtactcgaggccacacaccttgactttggactacacccagggctccctt
ctcgaaatgccagactcttgagtaatttagaagacgaaagggttcttcag
gcccttattgggatactgaagggaccatctgaaactgccaactcccccct
cccagaaagatgaggtggggtccaggaaggaaccaatccaaatggctatt
cctgtgtgccagtggtaaagctgg
aatgcatgcttgtgagcaagcaaacaacatgagaatgaactacattctca
acaataacatgccaagctcttctttgagctcctagagcaattctcttttt
ctctccccctgcctctccatttgctctccattccccagtctctcctcccc
gtctatctcccctctctccatacccctcttcctttcctttcctttcctct
ccatacccctcttcctttcctttcctttcctttcctttcctttcctttcc
tttcctttcctttcctttcctttcctttcctttcctctcctctcctctcc
actccactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_86103643_86104818
seq2: B6Ng01-163H21.b_43_1216 (reverse)

seq1  CCAGCTTTTACACTGG--CACAGGAATAGCCATTTGGTTTTGTTCTTTCC  48
      ||||||||  ||||||  ||||||||||||||||||| || |||| || |
seq2  CCAGCTTTACCACTGGCACACAGGAATAGCCATTTGGATTGGTTCCTT-C  49

seq1  CTGGA-CCCACATCTACTTCTTGGGA--GGGGAGTT-GCAGTTTCCAGAA  94
      ||||| ||||| ||  |||  |||||  |||||||| ||||||| |||| 
seq2  CTGGACCCCACCTCATCTTTCTGGGAGGGGGGAGTTGGCAGTTT-CAGAT  98

seq1  TGTCCCTTCAGTATCCCAATAGGGCCTTGAAGAACCCTTTTCCTTCTCTA  144
       |||||||||||||||||||| || | |||||||||| |||| |  ||||
seq2  GGTCCCTTCAGTATCCCAATAAGGGCCTGAAGAACCC-TTTCGTCTTCTA  147

seq1  ATTTACTCAAGAGTCTGGCATTTCGAGAAGGGAGCCCTGGGTGTTAGTCC  194
      | ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATTACTCAAGAGTCTGGCATTTCGAGAAGGGAGCCCTGGGTG-TAGTCC  196

seq1  AAAGTCAAGGTGTGTGGCCTCGAGTACTGACATTCTCTTTGTTTCCTTGG  244
      ||||||||||||||||||||||||||||||||||||| |||||  | |||
seq2  AAAGTCAAGGTGTGTGGCCTCGAGTACTGACATTCTC-TTGTT--CCTGG  243

seq1  CAGAGGGAGGACAGGCTTGGGCCAGCACAGCGCAGAGCTTCAGATTTTGC  294
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  CAGAGGGAAGACAGGCTTGGGCCAGCACAGCGCAGAGCTTCAGA-TTTGC  292

seq1  CAGACTGTGACTCTAACCTTCCCACTGAAGGGCAAATGAAACCACACTAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGTGACTCTAACCTTCCCACTGAAGGGCAAATGAAACCACACTAA  342

seq1  AAGACAACTTGGCTTCCATCAAAGGCAAGTTCCCCAGACCCAGTGATTTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAACTTGGCTTCCATCAAAGGCAAGTTCCCCAGACCCAGTGATTTA  392

seq1  GGTGTGTTTCTAGGCAACAGTCTCCGTGGCTAAGCCCCCGACCCTTACCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTTTCTAGGCAACAGTCTCCGTGGCTAAGCCCCCGACCCTTACCC  442

seq1  AACTTGGATCAGTTCTGTTCTGGAGAGAATACACCATGAACACATTCTCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGATCAGTTCTGTTCTGGAGAGAATACACCATGAACACATTCTCC  492

seq1  ATCCATCGTCAGGGGACCCAGGGGTGCCCAGAAAGGGGTTTAATTGCTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCGTCAGGGGACCCAGGGGTGCCCAGAAAGGGGTTTAATTGCTCT  542

seq1  GAGACGGAGTTCCTTTTCCTGATTAAGCCACTTAATAAATGGCCACATCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGGAGTTCCTTTTCCTGATTAAGCCACTTAATAAATGGCCACATCA  592

seq1  AGTAGCCTGAAGCGAGGCATTTCCTAGGAGGATCTAAATCACTTTTAATT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCCTGAAGCGAGGCATTTCCTAGGAGGATCTAAATCACTTTTAATT  642

seq1  TTTAGAGCCATGTGTTTTCCTTTGGCAGCCTGGAGCTGTGGTGCCCAGCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGCCATGTGTTTTCCTTTGGCAGCCTGGAGCTGTGGTGCCCAGCC  692

seq1  TGCCATCTGAGAAACATTTCTTCGAGGTGTCAAAAGGACGTGTCATGCAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCTGAGAAACATTTCTTCGAGGTGTCAAAAGGACGTGTCATGCAT  742

seq1  CTGGAATGAGGGCTAAATTAAGAGGCCATACAACACATAGCTACATAAGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATGAGGGCTAAATTAAGAGGCCATACAACACATAGCTACATAAGT  792

seq1  AGTCAGATATTCCAGGCTGCTTCCAGTATAAACTACTCATTTGGCACTCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATATTCCAGGCTGCTTCCAGTATAAACTACTCATTTGGCACTCT  842

seq1  TCTCTGGAGCAGAGTCAGACATGCAGAAGGACACTCGCAGCCCCTTATGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGAGCAGAGTCAGACATGCAGAAGGACACTCGCAGCCCCTTATGT  892

seq1  GCACACACATGTACCAGTGCACACACACACATGCACACATTTAAACTTGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACATGTACCAGTGCACACACACACATGCACACATTTAAACTTGC  942

seq1  GGGCAGGAAGAGAAGTAGAGGACCTGTTGAACACACCCACTGAGTCACCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGAAGAGAAGTAGAGGACCTGTTGAACACACCCACTGAGTCACCT  992

seq1  GAATTTTGTTGCTTCAGGAAATGTAACATTTGGCCATTGATTTTTTTTTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTGTTGCTTCAGGAAATGTAACATTTGGCCATTGATTTTTTTTTT  1042

seq1  CTACTTGTCATGCTTGATTCTGAGAGTGGCCTTGAGTCTCTCTGTGTCTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGTCATGCTTGATTCTGAGAGTGGCCTTGAGTCTCTCTGTGTCTC  1092

seq1  TGTCTCTCTCTGTCTCTCTGTCTCTGTCTGTCTCTCTGTCTCTGTCTCTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCTCTGTCTCTCTGTCTCTGTCTGTCTCTCTGTCTCTGTCTCTC  1142

seq1  TCTCTTTCTCACTTGGGTTCTGTGTTGAATTC  1176
      ||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTCACTTGGGTTCTGTGTTGAATTC  1174

seq1: chr17_85924018_85924326
seq2: B6Ng01-163H21.g_72_380

seq1  AATGCATGCTTGTGAGCAAGCAAACAACATGAGAATGAACTACATTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATGCTTGTGAGCAAGCAAACAACATGAGAATGAACTACATTCTCA  50

seq1  ACAATAACATGCCAAGCTCTTCTTTGAGCTCCTAGAGCAATTCTCTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAACATGCCAAGCTCTTCTTTGAGCTCCTAGAGCAATTCTCTTTTT  100

seq1  CTCTCCCCCTGCCTCTCCATTTGCTCTCCATTCCCCAGTCTCTCCTCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCCCTGCCTCTCCATTTGCTCTCCATTCCCCAGTCTCTCCTCCCC  150

seq1  GTCTATCTCCCCTCTCTCCATACCCCTCTTCCTTTCCTTTCCTTTCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATCTCCCCTCTCTCCATACCCCTCTTCCTTTCCTTTCCTTTCCTCT  200

seq1  CCATACCCCTCTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCCCTCTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCC  250

seq1  TTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTCTCCTCTCCTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTCTCCTCTCCTCTCC  300

seq1  TCTCCTCTC  309
       |||| |||
seq2  ACTCCACTC  309