BAC Information

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BAC

Clone NameB6Ng01-164C03
Chromosome17 (Build37)
Map Location 19,799,872 - 19,800,948
singlet/doubletsinglet
Overlap geneEG224572
Upstream geneVmn2r-ps115, Vmn2r-ps117, LOC100042183, EG627367, EG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576
Downstream geneEG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164C03.bB6Ng01-164C03.g
ACCDH956543DH956544
length1,2871,070
definitionDH956543|Mus musculus domesticus DNA, BAC clone: B6Ng01-164C03, 5' end.DH956544|Mus musculus domesticus DNA, BAC clone: B6Ng01-164C03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactactatcatttaaaaaacaagtcaaaaatcaatattcctcca
aaccaaaaacaatgccctcagaatcaataaccctttctcacatatcaact
tctgtcttccttgaattcagtggaagtgaagacacacaatgaccataaaa
attattatgaggcacaagtcccttccggtaaactccagcaccggggtgcc
ttgcctgcagagtcttcagatacccgcaaggagccacacaggatccccct
cgggatcctaagacctctggtgagtggaacacagcttctgctccaatcca
atcatgtgggacctcaaactgcattaactagggaaacagataacccgacc
tgatcagggtcacaagtcccttctgttccactccagcacctgtggagatt
ccggacacccccaaggtcctcacaagaccctatacaggatcttaaaacct
ctggtaagtggaacacaacctctgccaggaggcaggttcaagcaccagat
atttgggcaccttctgtgcaagaagagagcttgcatgcagagaatactct
gacaactgaagctaaggagagagctagtttcccaggtctgctgatagagg
ctaacagagtcacctgaggaacaagctctaaccagagacaactataacaa
ctagcttcagagattaccatttagcgaaaggcaaacttaagaatcttact
aacaggaaccaagaccactcaccatcatcagaatgcagcactcccacccc
acctagtcctgggcaccccaacacacctgaaaagcaagacctggatttaa
aagcatatctcatgatgatggtagaggacatcaagaaggactttaataac
tcacataaagaaatacaggagaacacagctaaacagatagaagaccttaa
agaggaaacacaaaaattccttaaagaattgcagaaaaacacgaccaaac
aggtgatggaattgaataaaaccatccaagacacaaaagggaagtaaaca
caataaagaaacccaaagtgaggcaacgctggagatagaaaccctaggaa
gaaatctggaacataaatgcgagcatcagcaacagaatgcaagaaaatgg
aggaaggaatctcaggggcgaagatcaaagaagaacttctgccccacaat
gaaaaaaatacggaatgcaaagatgctactctaacttcaggattcagacc
attggagagaaacctcgtatgagtgatgacctggaagttccacttgaggc
ccgcaatcttccacaaatggaggagaaagtcctcacc
gaattcaattctaggcaattttgtttttaatagaccgtaatattttattg
gagctatgcaccattgtgagctacgttgcatattaaaagacaaccaagtt
tctagaacatttctcatgtagaaatgccattctggatttttttttctacc
atgtgttccctcatgtatattaacagtgattatggctccattcctaacta
tattgtgatttggaattggctttatcattgctctcactatttctttgaat
tccagaaatgcaatttttcagtacaaaatcatttgttgaattttgaattc
aaacacaattccttcatggtcttatttttttcgaattaactgtaaaattc
ctttctttttatcgaccctgttgtaaccactgggatttattcaacccatt
tgcacttttcattggcagtaatgtctcttttgtgagctctgtttctccct
gtgtgtattttaagaaagatataatctccagaggtatatttaatcaaatt
taaaaatccaaacaaaagtagctcatagaatatatggcaaattttacagc
ttaagtttgttttgttagttctctctgtggtaaggactgatggtcctttt
tggtagcaatgaaaggattattttacctttcatctaacagaggtggatga
tgcatctaactaaaaaattcatattcattaattaatataatagttgtagg
ctgattttatgtaaaatctttagtgaggcaagttataatctttccaatga
aagaatattacaactaggtaaactatttcacagcatcctttagttacctg
catttgagtgtgtgtgagtgtgtatatgcaggtgtttgtgttgtgtaagt
tcaagtcatcctgggcattaatgaatgttgagtccatgaattaaaatgag
aaaggaattacataagaatttgcataatgaatggaagagggaaatgatgc
aatcattttatgatcttaagaaaaatgataaatatagttttaattttcaa
aatatatttattataagcatgctccttaaaatttgttgtgcaaagtgttg
atgttgcctctaatcattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_19799872_19800948
seq2: B6Ng01-164C03.g_64_1133

seq1  GAATTCAATTCTAGGCAATTTTGTTTTTAATAGACCGTAATATTTTATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCTAGGCAATTTTGTTTTTAATAGACCGTAATATTTTATTG  50

seq1  GAGCTATGCACCATTGTGAGCTACGTTGCATATTAAAAGACAACCAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATGCACCATTGTGAGCTACGTTGCATATTAAAAGACAACCAAGTT  100

seq1  TCTAGAACATTTCTCATGTAGAAATGCCATTCTGGATTTTTTTTTCTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAACATTTCTCATGTAGAAATGCCATTCTGGATTTTTTTTTCTACC  150

seq1  ATGTGTTCCCTCATGTATATTAACAGTGATTATGGCTCCATTCCTAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTCCCTCATGTATATTAACAGTGATTATGGCTCCATTCCTAACTA  200

seq1  TATTGTGATTTGGAATTGGCTTTATCATTGCTCTCACTATTTCTTTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGATTTGGAATTGGCTTTATCATTGCTCTCACTATTTCTTTGAAT  250

seq1  TCCAGAAATGCAATTTTTCAGTACAAAATCATTTGTTGAATTTTGAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAATGCAATTTTTCAGTACAAAATCATTTGTTGAATTTTGAATTC  300

seq1  AAACACAATTCCTTCATGGTCTTATTTTTTTCGAATTAACTGTAAAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAATTCCTTCATGGTCTTATTTTTTTCGAATTAACTGTAAAATTC  350

seq1  CTTTCTTTTTATCGACCCTGTTGTAACCACTGGGATTTATTCAACCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTTATCGACCCTGTTGTAACCACTGGGATTTATTCAACCCATT  400

seq1  TGCACTTTTCATTGGCAGTAATGTCTCTTTTGTGAGCTCTGTTTCTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTTTCATTGGCAGTAATGTCTCTTTTGTGAGCTCTGTTTCTCCCT  450

seq1  GTGTGTATTTTAAGAAAGATATAATCTCCAGAGGTATATTTAATCAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATTTTAAGAAAGATATAATCTCCAGAGGTATATTTAATCAAATT  500

seq1  TAAAAATCCAAACAAAAGTAGCTCATAGAATATATGGCAAATTTTACAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCCAAACAAAAGTAGCTCATAGAATATATGGCAAATTTTACAGC  550

seq1  TTAAGTTTGTTTTGTTAGTTCTCTCTGTGGTAAGGACTGATGGTCCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTGTTTTGTTAGTTCTCTCTGTGGTAAGGACTGATGGTCCTTTT  600

seq1  TGGTAGCAATGAAAGGATTATTTTACCTTTCATCTAACAGAGGTGGATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCAATGAAAGGATTATTTTACCTTTCATCTAACAGAGGTGGATGA  650

seq1  TGCATCTAACTAAAAAATTCATATTCATTAATTAATATAATAGTTGTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTAACTAAAAAATTCATATTCATTAATTAATATAATAGTTGTAGG  700

seq1  CTGATTTTATGTAAAATCTTTAGTGAGGCAAGTTATAATCTTTCCAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTTATGTAAAATCTTTAGTGAGGCAAGTTATAATCTTTCCAATGA  750

seq1  AAGAATATTACAACTAGGTAAACTATTTCACAGCATCCTTTAGTTACCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATTACAACTAGGTAAACTATTTCACAGCATCCTTTAGTTACCTG  800

seq1  CATTTGAGTGTGTGTGAGTGTGTATATGCAGGTGTTTGTGTTGTGTAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAGTGTGTGTGAGTGTGTATATGCAGGTGTTTGTGTTGTGTAAGT  850

seq1  TCAAGTCATCCTGGGCAATTAATGAATGTTGAGTCCATGAAATTAAAATG  900
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  TCAAGTCATCCTGGGC-ATTAATGAATGTTGAGTCCATG-AATTAAAATG  898

seq1  AGAAAGGAATTACATAAGAATTTGCATAATGAATGGAAGAGGGAAATGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAATTACATAAGAATTTGCATAATGAATGGAAGAGGGAAATGAT  948

seq1  GCAATCATTTTATGATCTTAAGAAAAAATGATAAATATAGTTTTAATTTT  1000
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCAATCATTTTATGATCTTAAG-AAAAATGATAAATATAGTTTTAATTTT  997

seq1  CAAAATATATTTATTATAAAGCATGCTCTTTAAAAATTTGTTGTGCAAAA  1050
      ||||||||||||||||| |||||||||| || |||||||||||||| |||
seq2  CAAAATATATTTATTAT-AAGCATGCTCCTT-AAAATTTGTTGTGC-AAA  1044

seq1  GTGTTTGATGTTGCCTCTAATCATTAA  1077
      ||| |||||||||||||||||||||||
seq2  GTG-TTGATGTTGCCTCTAATCATTAA  1070