BAC Information

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BAC

Clone NameB6Ng01-164J15
Chromosome17 (Build37)
Map Location 55,399,002 - 55,399,707
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117, EG629178, LOC100043833, LOC100043485
Downstream geneLOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164J15.bB6Ng01-164J15.g
ACCDH956883DH956884
length1,107706
definitionDH956883|Mus musculus domesticus DNA, BAC clone: B6Ng01-164J15, 5' end.DH956884|Mus musculus domesticus DNA, BAC clone: B6Ng01-164J15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctttacaacttgacttctaggcacaattgctggccattactatc
tcccacctggaaagcatgcccttaccaatttattctctccatctctccac
ttgccctaaacgtcagtggctagttccacctagccccagccagacatcct
tggccaccgcctgcagcagaggctacaggacctacctcccccaagacatg
gttgttgcattcttcttcctccaaagcacagcagaaaacgtcctctctcc
ttccctgcatctgccttttcctctttggaccctgaagtcctgcctgtagc
ttccttccaacaattggccttctttgctgacaaatcaagaaccaattgga
gaacaggactttaacatcagaacctcttccttcaggatacagttgtcaga
gagtgcagacaggctttctgcaggagactagctgcggctctgtaggcctt
ttatatgtctaccatggtggtggtagatgaaagagacagtcatatttatt
tatattatttatttgatgtttattatggaaaatgggtgcacaccttctcg
gggtcagacctgagactaattaccttttgcatgaaggaatgtctgggaag
ggaagtttattggctaagccctcagggcttcctggtaccctgaaactttt
gcatggagaactctgtgctgagcctacatgactacagatcatgtttcctt
atgtgaggagtgtggcatgtgttccaggccaggaatctatcagggagtag
ggagtcgcctaagtctcagatatgtgccttccaagtctctgggtctgaac
cctctttacccaccaagcttactggcatggctttactgttacacaactca
tccttttttctttttataaagcagaggtggcattggagtgactgcctcta
atgtatttttggtgaatattttgggtgtggtgaaagtaccaaaataaaac
gcggcacaggccagagtggtagtacacataaatcacaggggtatgatggg
tggggatatgtagacagtgaattatggaccatgcatattcagtgattgta
cggttgtagtgtataatatccttttaacaatatgaatcatggaggtttcc
cttacat
gaattcttggattatcaacatgtactaactttactgatctgacatataga
aaaaataagagcttttatgccttaactcttttttattttttaaagattta
tttatttattttatgtatatgagtacactgtaatcttcagacacaccaga
cacatcacattatagatggttgtgagccaccatgtggttgttgggaattg
aactcaggacctctggaagagctgtcagtgttcttaattgctgacccatc
tctcaaaccctatgtcttaattcctttatctatctattcgtggaatatat
gtttttcttcagaaatacttttctatctatattacaataatgataagagt
atgccaggcagtggtggttcgtgcctttaatcatagcacttggtaggcag
aggaaggcagatctctgagtttaagctagtctagtctacaaagctagtat
gaggacagccaggactacacagtgaaactctgtcttgaaaaaaatgataa
tgataataacatgaaggaatgaattatattaactgattctatttaaagtg
aatacataaagtatttggttgtacataataatttgatatatatttgtcaa
atacatgagtatacaaaaattttacaactttttctccagccccctctcac
catggtgtgtgtgtatgtgtgtgtgtctgtctgtgtgtgtgtgtgtgtgt
gtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_55399002_55399707
seq2: B6Ng01-164J15.g_66_771 (reverse)

seq1  ACACACACACACACACACACACACAGACAGACACACACACATACACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACAGACAGACACACACACATACACACAC  50

seq1  ACCATGGTGAGAGGGGGCTGGAGAAAAAGTTGTAAAATTTTTGTATACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGTGAGAGGGGGCTGGAGAAAAAGTTGTAAAATTTTTGTATACTC  100

seq1  ATGTATTTGACAAATATATATCAAATTATTATGTACAACCAAATACTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTGACAAATATATATCAAATTATTATGTACAACCAAATACTTTA  150

seq1  TGTATTCACTTTAAATAGAATCAGTTAATATAATTCATTCCTTCATGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCACTTTAAATAGAATCAGTTAATATAATTCATTCCTTCATGTTA  200

seq1  TTATCATTATCATTTTTTTCAAGACAGAGTTTCACTGTGTAGTCCTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATTATCATTTTTTTCAAGACAGAGTTTCACTGTGTAGTCCTGGCT  250

seq1  GTCCTCATACTAGCTTTGTAGACTAGACTAGCTTAAACTCAGAGATCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCATACTAGCTTTGTAGACTAGACTAGCTTAAACTCAGAGATCTGC  300

seq1  CTTCCTCTGCCTACCAAGTGCTATGATTAAAGGCACGAACCACCACTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTGCCTACCAAGTGCTATGATTAAAGGCACGAACCACCACTGCC  350

seq1  TGGCATACTCTTATCATTATTGTAATATAGATAGAAAAGTATTTCTGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATACTCTTATCATTATTGTAATATAGATAGAAAAGTATTTCTGAAG  400

seq1  AAAAACATATATTCCACGAATAGATAGATAAAGGAATTAAGACATAGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATATATTCCACGAATAGATAGATAAAGGAATTAAGACATAGGGT  450

seq1  TTGAGAGATGGGTCAGCAATTAAGAACACTGACAGCTCTTCCAGAGGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGATGGGTCAGCAATTAAGAACACTGACAGCTCTTCCAGAGGTCC  500

seq1  TGAGTTCAATTCCCAACAACCACATGGTGGCTCACAACCATCTATAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCAATTCCCAACAACCACATGGTGGCTCACAACCATCTATAATGT  550

seq1  GATGTGTCTGGTGTGTCTGAAGATTACAGTGTACTCATATACATAAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTCTGGTGTGTCTGAAGATTACAGTGTACTCATATACATAAAATA  600

seq1  AATAAATAAATCTTTAAAAAATAAAAAAGAGTTAAGGCATAAAAGCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATCTTTAAAAAATAAAAAAGAGTTAAGGCATAAAAGCTCTT  650

seq1  ATTTTTTCTATATGTCAGATCAGTAAAGTTAGTACATGTTGATAATCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCTATATGTCAGATCAGTAAAGTTAGTACATGTTGATAATCCAA  700

seq1  GAATTC  706
      ||||||
seq2  GAATTC  706