BAC Information

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BAC

Clone NameB6Ng01-165B23
Chromosome17 (Build37)
Map Location 47,535,806 - 47,701,961
singlet/doubletdoublet
Overlap geneGuca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3
Upstream geneZfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b
Downstream geneBysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165B23.bB6Ng01-165B23.g
ACCDH957264DH957265
length1,117707
definitionDH957264|Mus musculus domesticus DNA, BAC clone: B6Ng01-165B23, 5' end.DH957265|Mus musculus domesticus DNA, BAC clone: B6Ng01-165B23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,700,976 - 47,701,961)(47,535,806 - 47,536,512)
sequence
gaattcactatatacccaggctagctagcatcaaactgacagacatcctc
ctgcttcagcttcccaagcgctaggattacagatgtcagccacaatatcc
tacttgcccctttctttctccttcctgaggtgctggggttgttcccagag
agactcaagaacacaaggcaggtattctgccgctgagctataccccaaac
ccaaagttctttccatactgcaggctgtctccactgtgatcagagagtgc
cggagacaggaaaccatgctgggaaagattacttctcgctgacctgacac
aaaactctgatattaggggagataacacttagctgacagcgaagggtgtg
aagtttcaccactacaggggttactgcagatgagtcaccccctgctagaa
aacatgaaaccctacagtgtggatggggcagagtcttcagtagtggttca
tcaaaaattttgacaacaatctcagtaaaatcaaataaacaacaacaaca
acaaaaattgagacagcggctcactctgtagcccaagctggccacaaact
ccaggaagtccttctgcctcagccacctaagaagtagaattacagacacg
agccaccgcaactggctcaagtcctcaagtgtatgtggtattgtcaacaa
tgatttgaaaagctctaagaaactctttcttgatgctttttttttttttt
ttaagtctgggtttcttatgtagaccaacctggcctcaaactcatgacac
gcctgcctcaccttctaaggtgtcagggttacaagtgtgtctgtcccaca
aagtccagcttggaataacacttttctactatccagcattcacctcacgt
ggctcacaaacccataaactgcatctccaggagactggaggccactggcc
tccaagggcacctacatgcaaaccccccccccctccattcacacacacag
agacacacacccaatttaaaaataaatcttgtgggctagaagagatggtt
cagcagttaaaagggggttcaggttattcaggcacctacatggtatagct
tcataacttgcctttaactccaattctttgggaatgggatgttttttgcc
tgtccttcagtactaca
gaattccagacaatacgtgtgacagaaactgaagagatggcacccaagtg
acaagggttaggtaatggtggaggagttgcattgtggctgacttgaagga
atcttcccacagacttgtcttgaccccaagggcttcccttaacaggagga
gacaagatgttccagtgtgttgtgggtaggtgctgggatccctcccaacc
tggccaggaggaccactgcttcccctgagcactttgggaggaccactgct
ccccccaagtactgcaggaggaccactgcttccccggagcactttggggt
gtccaccctcatttctccttcaccttatcaccctatcccgggctctctgg
ccatctccttcagaagagcccttagagcggggacactgcccttgggctgg
ttctttagttcccgtaatccgattgggcctcttaactcatgtattagtga
gttttaaataaccacacagggatcgtggtgttccctagaaacaccgacca
cagtggtgttcttgaggggaggggcgccccctgccacaatggccacatgg
ccggccctatatcactgatagaacccatgtcccagtgaggggccagccca
gctgaggatcagcagacagagcataagcaggtgtgtggctttggattcca
ccctctttatacctgactgatctagataaatggtggctttatttatttat
agagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_47700976_47701961
seq2: B6Ng01-165B23.b_165_1161 (reverse)

seq1  TGTAGGAACTGAAGGGGCCAGGC-AAAAACATCCCA-TCCCAAAGAATTG  48
      |||| | ||||||  || ||||| |||||||||||| |||||||||||||
seq2  TGTA-GTACTGAA--GGACAGGCAAAAAACATCCCATTCCCAAAGAATTG  47

seq1  GAGTTAAAGGC-AGTTATG-AGCTATACCATGTAGGTG-CTG-ATAA-CT  93
      ||||||||||| ||||||| |||||||||||||||||| ||| |||| ||
seq2  GAGTTAAAGGCAAGTTATGAAGCTATACCATGTAGGTGCCTGAATAACCT  97

seq1  GAACCCCCTTTTAACTGCTGAACCATCTC-TCTAGCCC-CAAGATTTATT  141
      ||||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  GAACCCCCTTTTAACTGCTGAACCATCTCTTCTAGCCCACAAGATTTATT  147

seq1  TTT-AATTGGGTGTGTGTCTCTGTGTGTGTGAATGGA-GGGGGGGGGGTT  189
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTAAATTGGGTGTGTGTCTCTGTGTGTGTGAATGGAGGGGGGGGGGGTT  197

seq1  TGCATGTAGGTGCCCTTGGAGGCCAGTGGCCTCCAGTCTCCTGGAGATGC  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTAGGTGCCCTTGGAGGCCAGTGGCCTCCAGTCTCCTGGAGATGC  247

seq1  AG-TTATGGGTTTGTGAGCCACCTGAGGTGAATGCTGGATAGTAGAAAAG  288
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGTTTATGGGTTTGTGAGCCACGTGAGGTGAATGCTGGATAGTAGAAAAG  297

seq1  TGTTATTCCAAGCTGGACTTTGTGGGACAGACACACTTGTAACCCTGACA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTCCAAGCTGGACTTTGTGGGACAGACACACTTGTAACCCTGACA  347

seq1  CCTTAGAAGGTGAGGCAGGCGTGTCATGAGTTTGAGGCCAGGTTGGTCTA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAAGGTGAGGCAGGCGTGTCATGAGTTTGAGGCCAGGTTGGTCTA  397

seq1  CATAAGAAACCCAGACTT--AAAAAAAAAAAAAAGCATCAAGAAAGAGTT  436
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  CATAAGAAACCCAGACTTAAAAAAAAAAAAAAAAGCATCAAGAAAGAGTT  447

seq1  TCTTAGAGCTTTTCAAATCATTGTTGACAATACCACATACACTTGAGGAC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAGCTTTTCAAATCATTGTTGACAATACCACATACACTTGAGGAC  497

seq1  TTGAGCCAGTTGCGGTGGCTCGTGTCTGTAATTCTACTTCTTAGGTGGCT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCAGTTGCGGTGGCTCGTGTCTGTAATTCTACTTCTTAGGTGGCT  547

seq1  GAGGCAGAAGGACTTCCTGGAGTTTGTGGCCAGCCTGGGCTACAGAGTGA  586
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAGGCAGAAGGACTTCCTGGAGTTTGTGGCCAGCTTGGGCTACAGAGTGA  597

seq1  GCCGCTGTCTCAATTTTTGTTGTTGTTGTTGTTTATTTGATTTTACTGAG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCTGTCTCAATTTTTGTTGTTGTTGTTGTTTATTTGATTTTACTGAG  647

seq1  ATTGTTGTCAAAATTTTTGATGAACCACTACTGAAGACTCTGCCCCATCC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGTCAAAATTTTTGATGAACCACTACTGAAGACTCTGCCCCATCC  697

seq1  ACACTGTAGGGTTTCATGTTTTCTAGCAGGGGGTGACTCATCTGCAGTAA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTAGGGTTTCATGTTTTCTAGCAGGGGGTGACTCATCTGCAGTAA  747

seq1  CCCCTGTAGTGGTGAAACTTCACACCCTTCGCTGTCAGCTAAGTGTTATC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTAGTGGTGAAACTTCACACCCTTCGCTGTCAGCTAAGTGTTATC  797

seq1  TCCCCTAATATCAGAGTTTTGTGTCAGGTCAGCGAGAAGTAATCTTTCCC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTAATATCAGAGTTTTGTGTCAGGTCAGCGAGAAGTAATCTTTCCC  847

seq1  AGCATGGTTTCCTGTCTCCGGCACTCTCTGATCACAGTGGAGACAGCCTG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGTTTCCTGTCTCCGGCACTCTCTGATCACAGTGGAGACAGCCTG  897

seq1  CAGTATGGAAAGAACTTTGGGTTTGGGGTATAGCTCAGCGGCAGAATACC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGGAAAGAACTTTGGGTTTGGGGTATAGCTCAGCGGCAGAATACC  947

seq1  TGCCTTGTGTTCTTGAGTCTCTCTGGGAACAACCCCAGCACCTCAGGAAG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTGTTCTTGAGTCTCTCTGGGAACAACCCCAGCACCTCAGGAAG  997

seq1: chr17_47535806_47536512
seq2: B6Ng01-165B23.g_67_773

seq1  GAATTCCAGACAATACGTGTGACAGAAACTGAAGAGATGGCACCCAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACAATACGTGTGACAGAAACTGAAGAGATGGCACCCAAGTG  50

seq1  ACAAGGGTTAGGTAATGGTGGAGGAGTTGCATTGTGGCTGACTTGAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGTTAGGTAATGGTGGAGGAGTTGCATTGTGGCTGACTTGAAGGA  100

seq1  ATCTTCCCACAGACTTGTCTTGACCCCAAGGGCTTCCCTTAACAGGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCCACAGACTTGTCTTGACCCCAAGGGCTTCCCTTAACAGGAGGA  150

seq1  GACAAGATGTTCCAGTGTGTTGTGGGTAGGTGCTGGGATCCCTCCCAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGATGTTCCAGTGTGTTGTGGGTAGGTGCTGGGATCCCTCCCAACC  200

seq1  TGGCCAGGAGGACCACTGCTTCCCCTGAGCACTTTGGGAGGACCACTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGGAGGACCACTGCTTCCCCTGAGCACTTTGGGAGGACCACTGCT  250

seq1  CCCCCCAAGTACTGCAGGAGGACCACTGCTTCCCCGGAGCACTTTGGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAAGTACTGCAGGAGGACCACTGCTTCCCCGGAGCACTTTGGGGT  300

seq1  GTCCACCCTCATTTCTCCTTCACCTTATCACCCTATCCCGGGCTCTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCCTCATTTCTCCTTCACCTTATCACCCTATCCCGGGCTCTCTGG  350

seq1  CCATCTCCTTCAGAAGAGCCCTTAGAGCGGGGACACTGCCCTTGGGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCCTTCAGAAGAGCCCTTAGAGCGGGGACACTGCCCTTGGGCTGG  400

seq1  TTCTTTAGTTCCCGTAATCCGATTGGGCCTCTTAACTCATGTATTAGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGTTCCCGTAATCCGATTGGGCCTCTTAACTCATGTATTAGTGA  450

seq1  GTTTTAAATAACCACACAGGGATCTTGGTGTTCCCTAGAAACACCGACCA  500
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTTTTAAATAACCACACAGGGATCGTGGTGTTCCCTAGAAACACCGACCA  500

seq1  CAGTGGTGTTCTTGAGGGGAGGGGCGCCCCCTGCCACAATGGCCACATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTGTTCTTGAGGGGAGGGGCGCCCCCTGCCACAATGGCCACATGG  550

seq1  CCGGCCCTATATCACTGATAGAACCCATGTCCCAGTGAGGGGCCAGCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCCTATATCACTGATAGAACCCATGTCCCAGTGAGGGGCCAGCCCA  600

seq1  GCTGAGGATCAGCAGACAGAGCATAAGCAGGTGTGTGGCTTTGGATTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGATCAGCAGACAGAGCATAAGCAGGTGTGTGGCTTTGGATTCCA  650

seq1  CCATCTTTATACCTGACTGTTCTAGATAAATGGTGGCTTTATTTATTTAT  700
      || |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCTCTTTATACCTGACTGATCTAGATAAATGGTGGCTTTATTTATTTAT  700

seq1  TGAGCTC  707
       ||||||
seq2  AGAGCTC  707