BAC Information

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BAC

Clone NameB6Ng01-165H13
Chromosome1 (Build37)17 (Build37)
Map Location 104,506,298 - 104,507,21620,849,699 - 20,850,004
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041056
Downstream geneLOC100041067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165H13.bB6Ng01-165H13.g
ACCDH957521DH957522
length913959
definitionDH957521|Mus musculus domesticus DNA, BAC clone: B6Ng01-165H13, 5' end.DH957522|Mus musculus domesticus DNA, BAC clone: B6Ng01-165H13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,506,298 - 104,507,216)(20,849,699 - 20,850,004)
sequence
gaattctataaccaattctataagaaatggttgtttctaaacacatgtgg
tttaacattaagaatgaacaaagatgcaggtaatgcagagatgtaggtag
gtaggtaggtagatagatacatagataaatagatagatagatagatagat
agatagatagatagatagatagatataaaagcctaaccctatttataatg
aatagagtaaaagaataataaatggttctgtaagaaagaaaatttggggg
caaatgttctggtgagaatgagtcaaggttctctataggaacaaaactta
tagattttatgtgtatattattatacatacctatacttatacaatattta
atttatttcaatacaagatttattctcttatctcatatgatagggatttg
tggttttacaatgtctatgttctgaaaatcctcaaaaaaacacccttcca
atataggaaatgtgattcctagaagttactgtccagctctaggatctgga
agttaaccaaaaggaattccagaaaatgactctgttaaaataaaaataaa
taaaataaaataaaataaaaatctgagtctgaagccaatgggttatgctg
gcaactgacctagtcactcccaaaagctgaaaatttgacctgcttttaac
aatctttcttcatcccaacaatctgttcaagtgataactacaccttcctt
gtcactgtcccacatatcaattctttatagaaactaaaagctgtcttagc
attctaaacatttcttaattcagtagtctggacaactcagactgaatata
cactgacatgttgtttaaagatttttttttttttttttttgcttcttgga
gagattgccaggcttaatagacacctatcatacatccaccagacctcttg
actgatgacctaa
gaattctatcttggtaatcccaaacttatgagctaatatcgactttcaag
aattgacaaatgggacctcataaaattgcaaagcttttgtaagtcaaagg
gcactgtcaatagaacaaaattaggctgagaagcacctaagtaaatgttc
agcatccttagtcatcagagaaatgtgaatcaaaacaaacctgggattcc
acctcacactagtcataatgactaagatcaaaacataggtgacagcagat
gctggcaaggatgttgagaaagagtaacactcatccattgctggtaggtt
tgcaagctggtacaaacactctgaaaatcatcttggtggttcatcagaaa
attggacatagtactatctgaggacccagctataccaccccttggcatat
attcagaagatgctccaacatgtaataaggaaacatgctccactcttttc
atagcagccttgtttaaaaggaccaagatgtccttcaacagagtaatgta
tagagaaaatatggtacctttacacaataaagtactacacaactactaaa
aattaggaactcatgaagttcttaggcaaatggatggaactagaaaatat
catcttgagtgaagtaacccaatcacaaaagaacacatatggtatgccct
cactgataagtggatattagcccagaagtttggaatacccaacacgcttg
gctgtatgaagccacctctcttttctacacgtggaatgtgtcagtttttt
tctatggcactgtctcagtcagggtgtctattcctgcacaaacatcatga
ccaagaaacaagttagggaggaaagggtttatttggcttatacttccata
ttgctgttcatcaccgaatgaagtcagaactggactcaagcaggtcagaa
agcagagctgatgcagagtccatggaggcatgttctttactggcttgctt
ccctgattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_104506298_104507216
seq2: B6Ng01-165H13.b_45_957

seq1  GAATTCTATAACCAATTCTATAAGAAATGGTTGTTTCTAAACACATGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAACCAATTCTATAAGAAATGGTTGTTTCTAAACACATGTGG  50

seq1  TTTAACATTAAGAATGAACAAAGATGCAGGTAATGCAGAGATGTAGGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACATTAAGAATGAACAAAGATGCAGGTAATGCAGAGATGTAGGTAG  100

seq1  GTAGGTAGGTAGATAGATACATAGATAAATAGATAGATAGATAGATAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTAGGTAGATAGATACATAGATAAATAGATAGATAGATAGATAGAT  150

seq1  AGATAGATAGATAGATAGATAGATATAAAAGCCTAACCCTATTTATAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATAGATAGATAGATATAAAAGCCTAACCCTATTTATAATG  200

seq1  AATAGAGTAAAAGAATAATAAATGGTTCTGTAAGAAAGAAAATTTGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGTAAAAGAATAATAAATGGTTCTGTAAGAAAGAAAATTTGGGGG  250

seq1  CAAATGTTCTGGTGAGAATGAGTCAAGGTTCTCTATAGGAACAAAACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTCTGGTGAGAATGAGTCAAGGTTCTCTATAGGAACAAAACTTA  300

seq1  TAGATTTTATGTGTATATTATTATACATACCTATACTTATACAATATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTATGTGTATATTATTATACATACCTATACTTATACAATATTTA  350

seq1  ATTTATTTCAATACAAGATTTATTCTCTTATCTCATATGATAGGGATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTCAATACAAGATTTATTCTCTTATCTCATATGATAGGGATTTG  400

seq1  TGGTTTTACAATGTCTATGTTCTGAAAATCCTCAAAAAAACACCCTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTACAATGTCTATGTTCTGAAAATCCTCAAAAAAACACCCTTCCA  450

seq1  ATATAGGAAATGTGATTCCTAGAAGTTACTGTCCAGCTCTAGGATCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGGAAATGTGATTCCTAGAAGTTACTGTCCAGCTCTAGGATCTGGA  500

seq1  AGTTAACCAAAAGGAATTCCAGAAAATGACTCTGTTAAAATAAAAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACCAAAAGGAATTCCAGAAAATGACTCTGTTAAAATAAAAATAAA  550

seq1  TAAAATAAAATAAAATAAAAATCTGAGTCTGAAGCCAATGGGTTATGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAAATAAAATAAAAATCTGAGTCTGAAGCCAATGGGTTATGCTG  600

seq1  GCAACTGACCTAGTCACTCCCAAAAGCTGAAAATTTGACCTGCTTTTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGACCTAGTCACTCCCAAAAGCTGAAAATTTGACCTGCTTTTAAC  650

seq1  AATCTTTCTTCATCCCAACAATCTGTTCAAGTGATAACTACACCTTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCTTCATCCCAACAATCTGTTCAAGTGATAACTACACCTTCCTT  700

seq1  GTCACTGTCCCACATATCAATTCTTTATAGAAACTAAAAGCTGTTCTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTCACTGTCCCACATATCAATTCTTTATAGAAACTAAAAGCTG-TCTTAG  749

seq1  CATTCTAAACATTTCTTAATTCAGTAGTCTGGACAACTCAGACTGAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAAACATTTCTTAATTCAGTAGTCTGGACAACTCAGACTGAATAT  799

seq1  AACACTGACATGTTGTTTAAAGAATTTTTTTTTTTTTTTTTTTTGCTTCT  850
       ||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  -ACACTGACATGTTGTTTAAAGA--TTTTTTTTTTTTTTTTTTTGCTTCT  846

seq1  TGGAGAGATTGCCAGCCTTAATAGGAACACCTATCATACATCCACCAGAC  900
      ||||||||||||||| ||||||||  ||||||||||||||||||||||||
seq2  TGGAGAGATTGCCAGGCTTAATAG--ACACCTATCATACATCCACCAGAC  894

seq1  CTCTTGACTGATGACCTTA  919
      ||||||||||||||||| |
seq2  CTCTTGACTGATGACCTAA  913

seq1: chr17_20849699_20850004
seq2: B6Ng01-165H13.g_416_704 (reverse)

seq1  GTTCTTTTGTGATTGGGTTACCTCACTCAGGATGATGCCCTCCAGGTCCA  50
      ||||||||||||||||||||| ||||||| ||||||    || || ||||
seq2  GTTCTTTTGTGATTGGGTTACTTCACTCAAGATGATATTTTCTAGTTCCA  50

seq1  ACCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAG  100
       ||||||||||| ||| ||||| | ||| |  |||||| ||| || ||||
seq2  TCCATTTGCCTAAGAACTTCATGAGTTCCTAATTTTTAGTAGTTGTGTAG  100

seq1  TACTCCATTGTGTAAATGTACCACATTTTTTGTATACATTCTTCTGTTGA  150
      ||||  |||||||||| |||||| ||||| | ||||||||  ||||||||
seq2  TACTTTATTGTGTAAAGGTACCATATTTTCTCTATACATTACTCTGTTGA  150

seq1  GGGACATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAACGCTGCTA  200
       |||||||| ||| ||||                 |||| || |||||||
seq2  AGGACATCTTGGTCCTTT-----------------TAAACAAGGCTGCTA  183

seq1  TGAACATAGTGAAGCATGTGTCCTTCTTACCGGTTGGGAAATCTTCTGGA  250
      |||| | |||| ||||||| ||||| ||||  |||||   |||||||| |
seq2  TGAAAAGAGTGGAGCATGTTTCCTTATTACATGTTGGAGCATCTTCTGAA  233

seq1  TATATGCCCAGGAGAGGTATTGCGGGATCCTCCGGTAGTACTATGTCCAA  300
      |||||||| ||| | ||||| || || ||||| | |||||||||||||||
seq2  TATATGCCAAGGGGTGGTATAGCTGGGTCCTCAGATAGTACTATGTCCAA  283

seq1  TTTTCT  306
      ||||||
seq2  TTTTCT  289