BAC Information

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BAC

Clone NameB6Ng01-166B13
Chromosome17 (Build37)
Map Location 25,721,260 - 25,882,240
singlet/doubletdoublet
Overlap geneTmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484
Upstream genePkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8
Downstream geneMsln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166B13.bB6Ng01-166B13.g
ACCDH957965DH957966
length1,2041,009
definitionDH957965|Mus musculus domesticus DNA, BAC clone: B6Ng01-166B13, 5' end.DH957966|Mus musculus domesticus DNA, BAC clone: B6Ng01-166B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,721,260 - 25,722,479)(25,881,221 - 25,882,240)
sequence
gaattcactctgtagaccaggctggccacgaactcagagatctgcccact
tctgcctccccagtgcaggctttaaaggtgtgcaccaccattttttcttt
tcaaacttagatgatgctgttcattgcttgtgtataagagcacagtcggc
tcttctgttctgaccttgtgacccatcccatgatcttgattaatttacca
ttagtgctaacggttgtcatttttgtcttgtttttgtaagttctttggga
tcatccacatagaccatcttttgctaatgaagacacttttgcatcccccg
tctgtgtgtgtgcctcttaactctctcctctctcataccttttcctttgc
tttattctactcctccccaaccctgcactaggcacacatagctgaacacc
cggaagcagtggaagtgccctgtgaaagggaagatcctaggaatggactc
tgagctcgggctgtcacaatctcacgagtagccaaggctgctggcccttg
ccgttgcctgtttgtgacctgccctggttagtgtttattgtcaacttgac
ctggaaagaaggaattttgggtgaagaattgccccttcacactgagctgt
gggcgtgtccgtgggacattgatggtaatgattgatagctcgtgcaggag
tacccagcccactgtgggcggcaccatcccaaggcaagtggtcctgggct
acgtgtgagccagagagcaagctagtagtcagcattgcttcacagtttcc
gcttgagttcctgctctgacagccctcagtgatctgtgacctggaagcat
aagccgaaataagccatttccgcccttaagttggtttttaagttgcttta
agtcatggtgttcatcacagcaacagaaagcaaactggaacatgttatgt
tatgttcgtggctccatctcttcctcgtatgtccttatgaccgtagggcc
attatctcttcataccctgctcactaaggcctcttctctgtacccatgga
ggctgtctgcctgtgtcccttgggactgttgaagttgatcttattcgtgt
acacttggtgtcatggggggcccattcatggcccactgtgctcacctgtc
ctggtgttaccagccacatagcatttctttgatccccagggacccagtct
acttgcatccttgaaccatgaaggggggcgactctactcacactgcattg
tatg
gaattcagacccttatgtgtgtgttgcaagcactctacaggctgagccat
ctcccttgccacttgtgacattctcttatggcgatccactagacctctgg
tggcgaggcttggaccattccaccctctctccccatgctcagcttccccc
cccccccccccccggggcctcaggttgggaaggcggctgactgggaggct
caccggaactctgagggctggataaactgaagctgcttgaggctcatcca
gcagagacgggaacccccgatggccaccagaagagctccagtgaccttgc
cattgtggtccaagaacctctgtagaactgcctggaggcggggccaggct
cagtggggctgggcaaagcagaccagccggctccccgctgccccgttgcc
agccctatcaccctcacctccgtctggttgtccagagccgcatctgaggc
cagcaggatcatcactgtgtccccggatgtgatgttccactggcctattt
cagcgagggagtagaggtagaccagcgaggggatgaggtgcagctggtcc
tcagggatgccatgtgggtaaatctgaggcaggtgggcagtttcagttgg
agctgagccctccagcctccaccccgcacagaccagccacacacctgagt
aagcttggctttgacaacgcgctggcactctgcaggcagcgggtgttgga
gcaaggggtccaggttggccctgagcacgcgtgtgcctaggcaggattcc
agctgggtgcagtcatagtgcaccaggaagaggtcatcgtgcagggtggc
tgctgtgatgttgccacggacacaggatcttccctgcaaggtgtgctgat
gagcagtctggcagcgaagtctgagatgatagcttgctggctttgggact
ctatctgtaaccctggccctgactttgatcttatcacttttattttattt
tatatttgttttcgagataggatctctgattaggcctggctgtccggaac
cactctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_25721260_25722479
seq2: B6Ng01-166B13.b_45_1248

seq1  GAATTCACTCTGTAGACCAGGCTGGCCACGAACTCAGAGATCTGCCCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCCACGAACTCAGAGATCTGCCCACT  50

seq1  TCTGCCTCCCCAGTGCAGGCTTTAAAGGTGTGCACCACCATTTTTTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCCAGTGCAGGCTTTAAAGGTGTGCACCACCATTTTTTCTTT  100

seq1  TCAAACTTAGATGATGCTGTTCATTGCTTGTGTATAAGAGCACAGTCGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTTAGATGATGCTGTTCATTGCTTGTGTATAAGAGCACAGTCGGC  150

seq1  TCTTCTGTTCTGACCTTGTGACCCATCCCATGATCTTGATTAATTTACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTTCTGACCTTGTGACCCATCCCATGATCTTGATTAATTTACCA  200

seq1  TTAGTGCTAACGGTTGTCATTTTTGTCTTGTTTTTGTAAGTTCTTTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGCTAACGGTTGTCATTTTTGTCTTGTTTTTGTAAGTTCTTTGGGA  250

seq1  TCATCCACATAGACCATCTTTTGCTAATGAAGACACTTTTGCATCCCCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCACATAGACCATCTTTTGCTAATGAAGACACTTTTGCATCCCCCG  300

seq1  TCTGTGTGTGTGCCTCTTAACTCTCTCCTCTCTCATACCTTTTCCTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGTGTGCCTCTTAACTCTCTCCTCTCTCATACCTTTTCCTTTGC  350

seq1  TTTATTCTACTCCTCCCCAACCCTGCACTAGGCACACATAGCTGAACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTACTCCTCCCCAACCCTGCACTAGGCACACATAGCTGAACACC  400

seq1  CGGAAGCAGTGGAAGTGCCCTGTGAAAGGGAAGATCCTAGGAATGGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGCAGTGGAAGTGCCCTGTGAAAGGGAAGATCCTAGGAATGGACTC  450

seq1  TGAGCTCGGGCTGTCACAATCTCACGAGTAGCCAAGGCTGCTGGCCCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCGGGCTGTCACAATCTCACGAGTAGCCAAGGCTGCTGGCCCTTG  500

seq1  CCGTTGCCTGTTTGTGACCTGCCCTGGTTAGTGTTTATTGTCAACTTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGCCTGTTTGTGACCTGCCCTGGTTAGTGTTTATTGTCAACTTGAC  550

seq1  CTGGAAAGAAGGAATTTTGGGTGAAGAATTGCCCCTTCACACTGAGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGAAGGAATTTTGGGTGAAGAATTGCCCCTTCACACTGAGCTGT  600

seq1  GGGCGTGTCCGTGGGACATTGATGGTAATGATTGATAGCTCGTGCAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTGTCCGTGGGACATTGATGGTAATGATTGATAGCTCGTGCAGGAG  650

seq1  TACCCAGCCCACTGTGGGCGGCACCATCCCAAGGCAAGTGGTCCTGGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGCCCACTGTGGGCGGCACCATCCCAAGGCAAGTGGTCCTGGGCT  700

seq1  ACGTGTGAGCCAGAGAGCAAGCTAGTAGTCAGCATTGCTTCACAGTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTGAGCCAGAGAGCAAGCTAGTAGTCAGCATTGCTTCACAGTTTCC  750

seq1  GCTTGAGTTCCTGCTCTGACAGCCCTCAGTGATCTGTGACCTGGAAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGTTCCTGCTCTGACAGCCCTCAGTGATCTGTGACCTGGAAGCAT  800

seq1  AAGCCGAAATAAGCCATTTCCGCCCTTAAGTTGGTTTTTAAGTTGCTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGAAATAAGCCATTTCCGCCCTTAAGTTGGTTTTTAAGTTGCTTTA  850

seq1  AGTCATGGTGTTCATCACAGCAACAGAAAGCAAACTGGAACATGTTATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGGTGTTCATCACAGCAACAGAAAGCAAACTGGAACATGTTATGT  900

seq1  TATGTTCGTGGCTCCATCTCTTCCTCGTATGTCCTTATGACCGTAGGGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCGTGGCTCCATCTCTTCCTCGTATGTCCTTATGACCGTAGGGCC  950

seq1  ATTATCTCTTCATACCCTGCTCACCTAAGGGCCTCTTCTCCTGTACCCAT  1000
      ||||||||||||||||||||||| |||| |||||||||| ||||||||||
seq2  ATTATCTCTTCATACCCTGCTCA-CTAA-GGCCTCTTCT-CTGTACCCAT  997

seq1  GGAGGCCTGTTCTTGCCTGTGTCCCCTTGGGACTGTGGAAGTTGATCTTA  1050
      ||||| ||||   ||||||||| ||||||||||||| |||||||||||||
seq2  GGAGG-CTGT--CTGCCTGTGT-CCCTTGGGACTGTTGAAGTTGATCTTA  1043

seq1  TTCGTGTACACTT-GTGTCCATGGGGGCCCATTCAT-GCCCACTTGTCTC  1098
      ||||||||||||| |||||   |||||||||||||| |||||||   |||
seq2  TTCGTGTACACTTGGTGTCATGGGGGGCCCATTCATGGCCCACTGTGCTC  1093

seq1  ACCTGTCCCTGTGTCACCCAGCCAC-TAGCATCTCTTT-ATCCCACAGGG  1146
      ||||||||  |||| | |||||||| |||||| ||||| ||||| |||||
seq2  ACCTGTCCTGGTGTTA-CCAGCCACATAGCATTTCTTTGATCCC-CAGGG  1141

seq1  ACCCAGTTCCTACTTGCATCCCTGAGCCCATGGAGGGGTGGTCTGACCCT  1196
      |||||||  |||||||||||| |||  ||||| ||||| |    ||| ||
seq2  ACCCAGT--CTACTTGCATCCTTGA-ACCATGAAGGGGGG---CGACTCT  1185

seq1  ACTCACAACTCTTGCATTTGTATG  1220
      |||||||     |||| |||||||
seq2  ACTCACA----CTGCA-TTGTATG  1204

seq1: chr17_25881221_25882240
seq2: B6Ng01-166B13.g_69_1077 (reverse)

seq1  TACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGATCCTATCTCGA  50
      ||||||||| ||||| ||||||||||| |||  |||||||||||||||| 
seq2  TACAGAGTG-GTTCC-GGACAGCCAGGCCTAATCAGAGATCCTATCTCG-  47

seq1  AAAACCAAAAAAAAAAAAAAAAAAAAAAAAAGTGAATAAGATCAAAGTCA  100
            |||| ||| | |||| |||| ||||||| |||||||||||||||
seq2  ------AAAACAAATATAAAATAAAATAAAAGTG-ATAAGATCAAAGTCA  90

seq1  GGGCCAGGGTTACAGATAGAGTCCCAAAGCCAGCAAGCTATCATCTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGGGTTACAGATAGAGTCCCAAAGCCAGCAAGCTATCATCTCAGA  140

seq1  CCTTCGCCTGCCAGACTGCTCATCAGCACACCTTGCAGGG-AGATCCTGT  199
       ||||| ||||||||||||||||||||||||||||||||| |||||||||
seq2  -CTTCG-CTGCCAGACTGCTCATCAGCACACCTTGCAGGGAAGATCCTGT  188

seq1  GTCCGTGGCAACATCACAGCAGCCACCCTGCACGATGACCTCTTCCTGGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGTGGCAACATCACAGCAGCCACCCTGCACGATGACCTCTTCCTGGT  238

seq1  GCACTATGACTGCACCCAGCTGGAATCCTGCCTAGGCACACGCGTGCTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATGACTGCACCCAGCTGGAATCCTGCCTAGGCACACGCGTGCTCA  288

seq1  GGGCCAACCTGGACCCCTTGCTCCAACACCCGCTGCCTGCAGAGTGCCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAACCTGGACCCCTTGCTCCAACACCCGCTGCCTGCAGAGTGCCAG  338

seq1  CGCGTTGTCAAAGCCAAGCTTACTCAGGTGTGTGGCTGGTCTGTGCGGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTTGTCAAAGCCAAGCTTACTCAGGTGTGTGGCTGGTCTGTGCGGGG  388

seq1  TGGAGGCTGGAGGGCTCAGCTCCAACTGAAACTGCCCACCTGCCTCAGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCTGGAGGGCTCAGCTCCAACTGAAACTGCCCACCTGCCTCAGAT  438

seq1  TTACCCACATGGCATCCCTGAGGACCAGCTGCACCTCATCCCCTCGCTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCACATGGCATCCCTGAGGACCAGCTGCACCTCATCCCCTCGCTGG  488

seq1  TCTACCTCTACTCCCTCGCTGAAATAGGCCAGTGGAACATCACATCCGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTCTACTCCCTCGCTGAAATAGGCCAGTGGAACATCACATCCGGG  538

seq1  GACACAGTGATGATCCTGCTGGCCTCAGATGCGGCTCTGGACAACCAGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGTGATGATCCTGCTGGCCTCAGATGCGGCTCTGGACAACCAGAC  588

seq1  GGAGGTGAGGGTGATAGGGCTGGCAACGGGGCAGCGGGGAGCCGGCTGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGAGGGTGATAGGGCTGGCAACGGGGCAGCGGGGAGCCGGCTGGT  638

seq1  CTGCTTTGCCCAGCCCCACTGAGCCTGGCCCCGCCTCCAGGCAGTTCTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGCCCAGCCCCACTGAGCCTGGCCCCGCCTCCAGGCAGTTCTAC  688

seq1  AGAGGTTCTTGGACCACAATGGCAAGGTCACTGGAGCTCTTCTGGTGGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTCTTGGACCACAATGGCAAGGTCACTGGAGCTCTTCTGGTGGCC  738

seq1  ATCGGGGGTTCCCGTCTCTGCTGGATGAGCCTCAAGCAGCTTCAGTTTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGGGGTTCCCGTCTCTGCTGGATGAGCCTCAAGCAGCTTCAGTTTAT  788

seq1  CCAGCCCTCAGAGTTCCGGTGAGCCTCCCAGTCAGCCGCCTTCCCAACCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTCAGAGTTCCGGTGAGCCTCCCAGTCAGCCGCCTTCCCAACCT  838

seq1  GAGGCCCCGGGGGGGGGGGGGGGGGGAAGCTGAGCATGGGGAGAGAGGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCCGGGGGGGGGGGGGGGGGGAAGCTGAGCATGGGGAGAGAGGGT  888

seq1  GGAATGGTCCAAGCCTCGCCACCAGAGGTCTAGTGGATCGCCATAAGAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGTCCAAGCCTCGCCACCAGAGGTCTAGTGGATCGCCATAAGAGA  938

seq1  ATGTCACAAGTGGCAAGGGAGATGGCTCAGCCTGTAGAGTGCTTGCAACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACAAGTGGCAAGGGAGATGGCTCAGCCTGTAGAGTGCTTGCAACA  988

seq1  CACACATAAGGGTCTGAATTC  1020
      |||||||||||||||||||||
seq2  CACACATAAGGGTCTGAATTC  1009