BAC Information

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BAC

Clone NameB6Ng01-166E12
Chromosome17 (Build37)
Map Location 70,382,783 - 70,537,105
singlet/doubletdoublet
Overlap genenone
Upstream geneEpb4.1l3, 2410021H03Rik, Zfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623, LOC668720, LOC673535, LOC100043630
Downstream geneLOC623112, LOC623143, Dlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166E12.bB6Ng01-166E12.g
ACCDH958103DH958104
length1,1621,140
definitionDH958103|Mus musculus domesticus DNA, BAC clone: B6Ng01-166E12, 5' end.DH958104|Mus musculus domesticus DNA, BAC clone: B6Ng01-166E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,382,783 - 70,383,952)(70,535,970 - 70,537,105)
sequence
gaattctctttcactccagatgcttgcccactgatatttatattctaact
atcctccttataccactttgatacttcactattttctctttttgcttcat
ttcctttgtcttaactggcatctcctccactccaccattctttctttgac
tcttgggcttgccatagattgttgttcaaccagacagttactatctgata
gccaccagtgactgtcctttagcccatcctttatcgctgctgtgtggcca
ccagtgaccgtcctttagcccattctctatcagttctcttttcttgtatt
atcctttattctgtggggtctgggagtagtcttacccagattgtcctgct
ttcaccaacattgacactgagccagatctttgaccttggggatattcatt
gctttatccagggactgatttaaaaatgctcaatcactgtcaactttttt
tttcacatattgctaatgtaacattagcgatgattaactgtggctccatt
tagtaatttgctatgtccagcagaatatgtacctcctgaaggggctttta
agtcccagagaggtcatatccatcattatggtcacccctgggcacttatc
tggtcacaaatgcacttaaatagtttttgaggaaatgacccttagctttg
aagatatttcatcaacccacagccgtgtaacatccatcagggcaacatac
agcctggaatgcgttctgtgcatagcctctgctgctctgtgctggaaagt
tttcataggatttcttctgaaaaactaataggaggtttttgcctctgcca
agacatgaaaacatttgagcaaccatataacattattgtcaatccaggac
cgatttgtctgaactttttctacattgatttataattaataggttattca
ccactaaacttatgaaagtaaatatgaagtataaattgacttactgtcgt
attatactatgtgtatttggtgcatatttacaagtttctggatgacgaaa
acctcaaacataatttctattactgaaacagcttgtcttgtggttttcag
atccatttgcttattccagtggctataattaaactattcttttaaaatat
aattaactccatttggttataagtatggcaagtcctctcttgtcaaccaa
aacttctgtctc
gaattccattagtcatcctaatatgtaagatagaagacaggtctgaagtt
aattatccagtggttgcagttgaagagaggaagggaggtgaccgttagaa
actaaccaatatcctaggcatttaaatagtcccttgatagctcctgggca
gtgtattgacctacctgttgtaagatggggtaacagtctattctcagcag
ccaatttagtgaattggtagattgtgtaaacagaatcaaaatagaacaca
acagtaacagcacctcttgccaaagggtctattgcagccctggagagacg
acaagtgcaccattgacaaagaaagtagaaaatgagggtttaacagagcc
atcttcctctaatcttactgctatctttcattattctactccatgcatta
aactctccatttcttttctaattccagtgtacaatattaaagacaaatat
tactttttatgaaaagttattttaatacagtaaaatagtaataaagatct
tagcttggaagtctggaaagtggtatatttcatttcagcatcatggaaat
tgaaatcaaggggttttattttgtgactgattgcatataacgtttctacc
tttgcttaaaataaaacaagttaactttatctcctttaattacaaggggc
taagattatgttaagtgttaaaaggaaaactgaaaacaaaccaaaaccac
aaatacaaattagaagtccacttaggaaagagaaaaatcagacctttttc
ttttacatataagaagaacaaaaaatgtgtgtgattggttgcaaataagt
gaccctcttactttagtctcccatagaaacatcctacttgtttaagatgt
attgttttatgctttcaattagtatactagtcctgtttaattttctttaa
taaaaccctgattataaattgcttatattagctattgcttgcttgtaaat
cgtgcagggtgacgccacctgtgaggtctaaatggctgtgtttgctcaag
atgctgcagtctccacttctcttattcagtactattacagtcaatagtaa
caaacctttttacatttttcttgctattattttttctttcttggaagctc
gttacctccgtttacctccttttatacggatagtttctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_70382783_70383952
seq2: B6Ng01-166E12.b_48_1209

seq1  GAATTCTCTTTCACTCCAGATGCTTGCCCACTGATATTTATATTCTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCACTCCAGATGCTTGCCCACTGATATTTATATTCTAACT  50

seq1  ATCCTCCTTATACCACTTTGATACTTCACTATTTTCTCTTTTTGCTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCTTATACCACTTTGATACTTCACTATTTTCTCTTTTTGCTTCAT  100

seq1  TTCCTTTGTCTTAACTGGCATCTCCTCCACTCCACCATTCTTTCTTTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGTCTTAACTGGCATCTCCTCCACTCCACCATTCTTTCTTTGAC  150

seq1  TCTTGGGCTTGCCATAGATTGTTGTTCAACCAGACAGTTACTATCTGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGCTTGCCATAGATTGTTGTTCAACCAGACAGTTACTATCTGATA  200

seq1  GCCACCAGTGACTGTCCTTTAGCCCATCCTTTATCGCTGCTGTGTGGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCAGTGACTGTCCTTTAGCCCATCCTTTATCGCTGCTGTGTGGCCA  250

seq1  CCAGTGACCGTCCTTTAGCCCATTCTCTATCAGTTCTCTTTTCTTGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGACCGTCCTTTAGCCCATTCTCTATCAGTTCTCTTTTCTTGTATT  300

seq1  ATCCTTTATTCTGTGGGGTCTGGGAGTAGTCTTACCCAGATTGTCCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTATTCTGTGGGGTCTGGGAGTAGTCTTACCCAGATTGTCCTGCT  350

seq1  TTCACCAACATTGACACTGAGCCAGATCTTTGACCTTGGGGATATTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCAACATTGACACTGAGCCAGATCTTTGACCTTGGGGATATTCATT  400

seq1  GCTTTATCCAGGGACTGATTTAAAAATGCTCAATCACTGTCAACTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATCCAGGGACTGATTTAAAAATGCTCAATCACTGTCAACTTTTTT  450

seq1  TTTCACATATTGCTAATGTAACATTAGCGATGATTAACTGTGGCTCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATATTGCTAATGTAACATTAGCGATGATTAACTGTGGCTCCATT  500

seq1  TAGTAATTTGCTATGTCCAGCAGAATATGTACCTCCTGAAGGGGCTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATTTGCTATGTCCAGCAGAATATGTACCTCCTGAAGGGGCTTTTA  550

seq1  AGTCCCAGAGAGGTCATATCCATCATTATGGTCACCCCTGGGCACTTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAGAGAGGTCATATCCATCATTATGGTCACCCCTGGGCACTTATC  600

seq1  TGGTCACAAATGCACTTAAATAGTTTTTGAGGAAATGACCCTTAGCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACAAATGCACTTAAATAGTTTTTGAGGAAATGACCCTTAGCTTTG  650

seq1  AAGATATTTCATCAACCCACAGCCGTGTAACATCCATCAGGGCAACATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTTCATCAACCCACAGCCGTGTAACATCCATCAGGGCAACATAC  700

seq1  AGCCTGGAATGCGTTCTGTGCATAGCCTCTGCTGCTCTGTGCTGGAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGAATGCGTTCTGTGCATAGCCTCTGCTGCTCTGTGCTGGAAAGT  750

seq1  TTTCATAGGATTTCTTCTGAAAAACTAATAGGAGGTTTTTGCCTCTGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAGGATTTCTTCTGAAAAACTAATAGGAGGTTTTTGCCTCTGCCA  800

seq1  AGACATGAAAACATTTGAGCAACCATATAACATTATTGTCAATCCAGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGAAAACATTTGAGCAACCATATAACATTATTGTCAATCCAGGAC  850

seq1  CGATTTGTCTGAACTTTTTCTACATTGATTTATAATTAATAGGTTATTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTGTCTGAACTTTTTCTACATTGATTTATAATTAATAGGTTATTCA  900

seq1  CCACTAAACTTATGAAAGTAAAATATGAAGTATAAATTGACTTACTGTCG  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCACTAAACTTATGAAAGT-AAATATGAAGTATAAATTGACTTACTGTCG  949

seq1  TATTATACTTATGTGTATTTTGGTGCATATTTTACAAGTTTCTGGATGAC  1000
      |||||||| |||||||| ||||||||||| ||||||||||||||||||||
seq2  TATTATAC-TATGTGTA-TTTGGTGCATA-TTTACAAGTTTCTGGATGAC  996

seq1  GAAAACCTCAAACAT-ATTTCTATTACTGAAACAGCTTGTCTTGTGGTTT  1049
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAAAACCTCAAACATAATTTCTATTACTGAAACAGCTTGTCTTGTGGTTT  1046

seq1  TTCAAGATCCATATTGCTTATTCCAGTAGCTATTAATTAACTAATTTCTT  1099
      |   |||||||| |||||||||||||| ||||| | | |||||  |||||
seq2  T--CAGATCCAT-TTGCTTATTCCAGTGGCTATAATTAAACTA--TTCTT  1091

seq1  TAAAATTATAATTAACT-CATTTGTTTAT-AGTATGGCAGGTCCCTCCTT  1147
      | ||| ||||||||||| |||||| |||| ||||||||| ||||   |||
seq2  TTAAAATATAATTAACTCCATTTGGTTATAAGTATGGCAAGTCCTCTCTT  1141

seq1  GTCATAACCAAAACTTCTGTCTC  1170
      |||  ||||||||||||||||||
seq2  GTC--AACCAAAACTTCTGTCTC  1162

seq1: chr17_70535970_70537105
seq2: B6Ng01-166E12.g_67_1206 (reverse)

seq1  GGAGAAACTAT-CGTAT-AAAGAAGTAAAACGGAGTAAAGGAAGCTTCC-  47
      ||||||||||| ||||| |||| ||  ||||||||  || | ||||||| 
seq2  GGAGAAACTATCCGTATAAAAGGAGGTAAACGGAGGTAACG-AGCTTCCA  49

seq1  AGAA--GAAAAATATTAGCAAGAAAAAATGTAAAAGGGTTTG-TACTA-T  93
      ||||   ||||||| ||||||| |||||||||||| |||||| ||||| |
seq2  AGAAAGAAAAAATAATAGCAAG-AAAAATGTAAAAAGGTTTGTTACTATT  98

seq1  GACTGT-ATAGTACTGAATAAGAGAAGTGGAGACTGCAGCATCCTTGAGC  142
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  GACTGTAATAGTACTGAATAAGAGAAGTGGAGACTGCAGCAT-CTTGAGC  147

seq1  AAACACAGCCATTTAGACCTCACAGGTGGCCTTCACCCTGCACGATTTAC  192
      ||||||||||||||||||||||||||||| | ||||||||||||||||||
seq2  AAACACAGCCATTTAGACCTCACAGGTGG-CGTCACCCTGCACGATTTAC  196

seq1  AAGCAAGCAATAGCTAATATAAGCAATTTATAATCAGGGTTTTATTAAAG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGCAATAGCTAATATAAGCAATTTATAATCAGGGTTTTATTAAAG  246

seq1  AAAATTAAACAGGACTAGTATACTAATTGAAAGCATAAAACAATACATCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAACAGGACTAGTATACTAATTGAAAGCATAAAACAATACATCT  296

seq1  TAAACAAGTAGGATGTTTCTATGGGAGACTAAAGTAAGAGGGTCACTTAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAGTAGGATGTTTCTATGGGAGACTAAAGTAAGAGGGTCACTTAT  346

seq1  TTGCAACCAATCACACACATTTTTTGTTCTTCTTATATGTAAAAGAAAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACCAATCACACACATTTTTTGTTCTTCTTATATGTAAAAGAAAAA  396

seq1  GGTCTGATTTTTCTCTTTCCTAAGTGGACTTCTAATTTGTATTTGTGGTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGATTTTTCTCTTTCCTAAGTGGACTTCTAATTTGTATTTGTGGTT  446

seq1  TTGGTTTGTTTTCAGTTTTCCTTTTAACACTTAACATAATCTTAGCCCCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGTTTTCAGTTTTCCTTTTAACACTTAACATAATCTTAGCCCCT  496

seq1  TGTAATTAAAGGAGATAAAGTTAACTTGTTTTATTTTAAGCAAAGGTAGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTAAAGGAGATAAAGTTAACTTGTTTTATTTTAAGCAAAGGTAGA  546

seq1  AACGTTATATGCAATCAGTCACAAAATAAAACCCCTTGATTTCAATTTCC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTATATGCAATCAGTCACAAAATAAAACCCCTTGATTTCAATTTCC  596

seq1  ATGATGCTGAAATGAAATATACCACTTTCCAGACTTCCAAGCTAAGATCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCTGAAATGAAATATACCACTTTCCAGACTTCCAAGCTAAGATCT  646

seq1  TTATTACTATTTTACTGTATTAAAATAACTTTTCATAAAAAGTAATATTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACTATTTTACTGTATTAAAATAACTTTTCATAAAAAGTAATATTT  696

seq1  GTCTTTAATATTGTACACTGGAATTAGAAAAGAAATGGAGAGTTTAATGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAATATTGTACACTGGAATTAGAAAAGAAATGGAGAGTTTAATGC  746

seq1  ATGGAGTAGAATAATGAAAGATAGCAGTAAGATTAGAGGAAGATGGCTCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTAGAATAATGAAAGATAGCAGTAAGATTAGAGGAAGATGGCTCT  796

seq1  GTTAAACCCTCATTTTCTACTTTCTTTGTCAATGGTGCACTTGTCGTCTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACCCTCATTTTCTACTTTCTTTGTCAATGGTGCACTTGTCGTCTC  846

seq1  TCCAGGGCTGCAATAGACCCTTTGGCAAGAGGTGCTGTTACTGTTGTGTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGCTGCAATAGACCCTTTGGCAAGAGGTGCTGTTACTGTTGTGTT  896

seq1  CTATTTTGATTCTGTTTACACAATCTACCAATTCACTAAATTGGCTGCTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTGATTCTGTTTACACAATCTACCAATTCACTAAATTGGCTGCTG  946

seq1  AGAATAGACTGTTACCCCATCTTACAACAGGTAGGTCAATACACTGCCCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGACTGTTACCCCATCTTACAACAGGTAGGTCAATACACTGCCCA  996

seq1  GGAGCTATCAAGGGACTATTTAAATGCCTAGGATATTGGTTAGTTTCTAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTATCAAGGGACTATTTAAATGCCTAGGATATTGGTTAGTTTCTAA  1046

seq1  CGGTCACCTCCCTTCCTCTCTTCAACTGCAACCACTGGATAATTAACTTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCACCTCCCTTCCTCTCTTCAACTGCAACCACTGGATAATTAACTTC  1096

seq1  AGACCTGTCTTCTATCTTACATATTAGGATGACTAATGGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGTCTTCTATCTTACATATTAGGATGACTAATGGAATTC  1140