BAC Information

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BAC

Clone NameB6Ng01-167F18
Chromosome17 (Build37)
Map Location 12,405,727 - 12,623,140
singlet/doubletdoublet
Overlap geneAgpat4, Map3k4, 4732491K20Rik, LOC625753, Plg, Slc22a3
Upstream genePark2, Tdgf1-ps2
Downstream geneLOC100041192, Slc22a2, Slc22a1, Igf2r, Air, EG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a, Smok2a, Smok2b, LOC667359, LOC100041352, LOC667372
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167F18.bB6Ng01-167F18.g
ACCDH958880DH958881
length1,185770
definitionDH958880|Mus musculus domesticus DNA, BAC clone: B6Ng01-167F18, 5' end.DH958881|Mus musculus domesticus DNA, BAC clone: B6Ng01-167F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,405,727 - 12,406,915)(12,622,371 - 12,623,140)
sequence
gaattcagttctcactgttattacctggtggctcacaactgcctgtaaat
ccagcaacggggatgcgatgctctcttcaggtctcatgtgtacatatgcc
cacatagacatgcacccacattgttacaaagtaagtcttttataaaaaaa
ggaaaatggtatttgataactttataaatcatggctatcgttctataaca
gacacatccttagatgaacctaggtcatctcctacccatatttgttcaaa
tatcggtatttgtgactacagtaggctctgcctactagaaagttgcttat
tagcatccttatcagtatagaattgacagtcatgactgctttaaagccca
catgaccacaggaattactctgtttctatgactcgcttacagttggcttt
ctgattacaaaagatgatacatgttcaatgtagagtgggtgaacaatcta
gaaaaacccaaggaagaggtctctatcatgcgtgtcattggtagacaggt
tacggcgtgtgtatgtcttccagtgtgtgtgtgtgactaccaagcagaac
tggcctcacctgctatatactaccttgtttgtcttgtcttatagtcccag
ctgtatatgactgtacactcaatttcagaaacaatgaaaacccaacactg
ctgggagtcttaaatggaaagaaatatcacgctgactgctacgttcggta
agctggccctgcttccttcctagaaatgggagggcttgtttctaagtgct
aaatgacaaggagtccgcctccagcaacgtctgcttgccactgaacttct
ccccagttatttatattatgaactcaggaggcatagcacacctactgcac
accctggagaggatgccgtcccttccagctctttcaaatctgttaactgg
cttggctcagtttgtctcgctcccctctcagagctctgggcggacagaca
ggaggccagtactcactatcagtcattctttgtggacacatttcctacaa
gatggatctgctctttgcaagacaagccaattttttctttcttctgtatt
ataattatgcctgcttaatggcttacccaatgcgccccctgatctccaga
atgtcaccaagaactagtgaatgaacattgggaagattgtagcaaggcag
agaggtcacggggcattgctccccacaccttatgc
gaattctgtatatgaatagaggcccatcccttgagcaagcatgccttcca
atttaaggggctcttggccttgactccggggcacagactgtgaagttagc
cttgcctctcagctggacttgatgtcaccatcggtccctggctaaaatgc
taatgagcctttgggagaggtcagctctgaaaatgacttctctagaaacc
tttctttttatggtctgaacttggaaaaagaaaagatcttcctgactgct
tattcctctaggattcatggtctagaaagcaaacttctgaactctggagc
tcagaaagcaggcattttctctgtgcctgtccctctgcagttgtggccac
tctgtgcggctacaaacccagcagtagggcaaggcttccttccagatatg
gttttttttttttatttttatttctaagtggaaaactctgaactaggagc
ataccctaatttacatatccttattaggacttctctctaaactttatttt
ggagcagatggtacatccagggaaagtgaaagttacatatttttaaattc
tgcatcttttctttaaaagctgagctttaagacgctagctgcctgagcaa
gtctccatccatagaggaagatcatttctctgtgttctctgacatgaccg
tggaaaacagctttaactgcagtgatcatctatgtgagcgtgtgtgggaa
ggaagaaagagaggagagagagagaaagatgagagaaaaggaagaggagg
gagagagagagaaacaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_12405727_12406915
seq2: B6Ng01-167F18.b_45_1229

seq1  GAATTCAGTTCTCACTGTTATTACCTGGTGGCTCACAACTGCCTGTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCTCACTGTTATTACCTGGTGGCTCACAACTGCCTGTAAAT  50

seq1  CCAGCAACGGGGATGCGATGCTCTCTTCAGGTCTCATGTGTACATATGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACGGGGATGCGATGCTCTCTTCAGGTCTCATGTGTACATATGCC  100

seq1  CACATAGACATGCACCCACATTGTTACAAAGTAAGTCTTTTATAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGACATGCACCCACATTGTTACAAAGTAAGTCTTTTATAAAAAAA  150

seq1  GGAAAATGGTATTTGATAACTTTATAAATCATGGCTATCGTTCTATAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATGGTATTTGATAACTTTATAAATCATGGCTATCGTTCTATAACA  200

seq1  GACACATCCTTAGATGAACCTAGGTCATCTCCTACCCATATTTGTTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATCCTTAGATGAACCTAGGTCATCTCCTACCCATATTTGTTCAAA  250

seq1  TATCGGTATTTGTGACTACAGTAGGCTCTGCCTACTAGAAAGTTGCTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGGTATTTGTGACTACAGTAGGCTCTGCCTACTAGAAAGTTGCTTAT  300

seq1  TAGCATCCTTATCAGTATAGAATTGACAGTCATGACTGCTTTAAAGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCCTTATCAGTATAGAATTGACAGTCATGACTGCTTTAAAGCCCA  350

seq1  CATGACCACAGGAATTACTCTGTTTCTATGACTCGCTTACAGTTGGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCACAGGAATTACTCTGTTTCTATGACTCGCTTACAGTTGGCTTT  400

seq1  CTGATTACAAAAGATGATACATGTTCAATGTAGAGTGGGTGAACAATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTACAAAAGATGATACATGTTCAATGTAGAGTGGGTGAACAATCTA  450

seq1  GAAAAACCCAAGGAAGAGGTCTCTATCATGCGTGTCATTGGTAGACAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACCCAAGGAAGAGGTCTCTATCATGCGTGTCATTGGTAGACAGGT  500

seq1  TACGGCGTGTGTATGTCTTCCAGTGTGTGTGTGTGACTACCAAGCAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGCGTGTGTATGTCTTCCAGTGTGTGTGTGTGACTACCAAGCAGAAC  550

seq1  TGGCCTCACCTGCTATATACTACCTTGTTTGTCTTGTCTTATAGTCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCACCTGCTATATACTACCTTGTTTGTCTTGTCTTATAGTCCCAG  600

seq1  CTGTATATGACTGTACACTCAATTTCAGAAACAATGAAAACCCAACACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATATGACTGTACACTCAATTTCAGAAACAATGAAAACCCAACACTG  650

seq1  CTGGGAGTCTTAAATGGAAAGAAATATCACGCTGACTGCTACGTTCGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGTCTTAAATGGAAAGAAATATCACGCTGACTGCTACGTTCGGTA  700

seq1  AGCTGGCCCTGCTTCCTTCCTAGAAATGGGAGGGCTTGTTTCTAAGTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCCCTGCTTCCTTCCTAGAAATGGGAGGGCTTGTTTCTAAGTGCT  750

seq1  AAATGACAAGGAGTCCGCCTCCAGCAACGTCTGCTTGCCACTGAACTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACAAGGAGTCCGCCTCCAGCAACGTCTGCTTGCCACTGAACTTCT  800

seq1  CCCCAGTTATTTATATTATGAACTCAGGAGGCATAGCACACCTACTGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTTATTTATATTATGAACTCAGGAGGCATAGCACACCTACTGCAC  850

seq1  ACCCTGGAGAGGATGCCGTCCCTTCCAGCTCTTTCAAATCTGTTAACTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGAGAGGATGCCGTCCCTTCCAGCTCTTTCAAATCTGTTAACTGG  900

seq1  CTTGGCTCAGTTTGTCTCGCTCCCCTCTCAGAGCTCTGGGCGGACAGACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTCAGTTTGTCTCGCTCCCCTCTCAGAGCTCTGGGCGGACAGACA  950

seq1  GGAGGCCAGTACTCACTATCAGTCATTCTTTGTGGACACATTTCCTACAA  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGAGGCCAGTACTCACTATCAGTCATTCTTTGTGGACACATTTCCTAC-A  999

seq1  AGATGGATCTGCTCTTTGCAAAGACAAGCCAATTTTTTTCTTTCTTTTCT  1050
      ||||||||||||||||||| |||||||||||| |||||||||||  ||||
seq2  AGATGGATCTGCTCTTTGC-AAGACAAGCCAA-TTTTTTCTTTC--TTCT  1045

seq1  GTTATTATTATTATTGCCTGCTTAATGGCTTACCCAATGCGCCCCTTGAT  1100
      | |||||| |||| ||||||||||||||||||||||||||||||| ||||
seq2  G-TATTATAATTA-TGCCTGCTTAATGGCTTACCCAATGCGCCCCCTGAT  1093

seq1  CTCCAGAATGTCACCAAG-ACTAGTGGAATG-ACAATGGGAAGA-TGTAG  1147
      |||||||||||||||||| |||||| ||||| ||| |||||||| |||||
seq2  CTCCAGAATGTCACCAAGAACTAGT-GAATGAACATTGGGAAGATTGTAG  1142

seq1  C-AGGCAG-GAAGTCACGGGGCCATTTGCTCAACA-ACCTTATGC  1189
      | |||||| || ||||||||||   ||||||  || |||||||||
seq2  CAAGGCAGAGAGGTCACGGGGC--ATTGCTCCCCACACCTTATGC  1185

seq1: chr17_12622371_12623140
seq2: B6Ng01-167F18.g_65_834 (reverse)

seq1  TCTTTGTTTCTCTCTCTCTCCCTCCTCTTCCTTTTCTCTCATCTTTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTTCTCTCTCTCTCCCTCCTCTTCCTTTTCTCTCATCTTTCTCT  50

seq1  CTCTCTCCTCTCTTTCTTCCTTCCCACACACGCTCACATAGATGATCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCTCTCTTTCTTCCTTCCCACACACGCTCACATAGATGATCACT  100

seq1  GCAGTTAAAGCTGTTTTCCACGGTCATGTCAGAGAACACAGAGAAATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAAAGCTGTTTTCCACGGTCATGTCAGAGAACACAGAGAAATGAT  150

seq1  CTTCCTCTATGGATGGAGACTTGCTCAGGCAGCTAGCGTCTTAAAGCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTATGGATGGAGACTTGCTCAGGCAGCTAGCGTCTTAAAGCTCA  200

seq1  GCTTTTAAAGAAAAGATGCAGAATTTAAAAATATGTAACTTTCACTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAAAGAAAAGATGCAGAATTTAAAAATATGTAACTTTCACTTTCC  250

seq1  CTGGATGTACCATCTGCTCCAAAATAAAGTTTAGAGAGAAGTCCTAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGTACCATCTGCTCCAAAATAAAGTTTAGAGAGAAGTCCTAATAA  300

seq1  GGATATGTAAATTAGGGTATGCTCCTAGTTCAGAGTTTTCCACTTAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGTAAATTAGGGTATGCTCCTAGTTCAGAGTTTTCCACTTAGAAA  350

seq1  TAAAAATAAAAAAAAAAAACCATATCTGGAAGGAAGCCTTGCCCTACTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAAAAAAAAAAACCATATCTGGAAGGAAGCCTTGCCCTACTGC  400

seq1  TGGGTTTGTAGCCGCACAGAGTGGCCACAACTGCAGAGGGACAGGCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTGTAGCCGCACAGAGTGGCCACAACTGCAGAGGGACAGGCACAG  450

seq1  AGAAAATGCCTGCTTTCTGAGCTCCAGAGTTCAGAAGTTTGCTTTCTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGCCTGCTTTCTGAGCTCCAGAGTTCAGAAGTTTGCTTTCTAGA  500

seq1  CCATGAATCCTAGAGGAATAAGCAGTCAGGAAGATCTTTTCTTTTTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAATCCTAGAGGAATAAGCAGTCAGGAAGATCTTTTCTTTTTCCAA  550

seq1  GTTCAGACCATAAAAAGAAAGGTTTCTAGAGAAGTCATTTTCAGAGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGACCATAAAAAGAAAGGTTTCTAGAGAAGTCATTTTCAGAGCTGA  600

seq1  CCTCTCCCAAAGGCTCATTAGCATTTTAGCCAGGGACCGATGGTGACATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCAAAGGCTCATTAGCATTTTAGCCAGGGACCGATGGTGACATC  650

seq1  AAGTCCAGCTGAGAGGCAAGGCTAACTTCACAGTCTGTGCCCCGGAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCAGCTGAGAGGCAAGGCTAACTTCACAGTCTGTGCCCCGGAGTCA  700

seq1  AGGCCAAGAGCCCCTTAAATTGGAAGGCATGCTTGCTCAAGGGATGGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAGAGCCCCTTAAATTGGAAGGCATGCTTGCTCAAGGGATGGGCC  750

seq1  TCTATTCATATACAGAATTC  770
      ||||||||||||||||||||
seq2  TCTATTCATATACAGAATTC  770